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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7405#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1036 fasta sequence
[GTATGATTCGCTTAAGTTTATGAACTACGAACAGCTCGAGCAACGGCTGGCCAGCCTGGACAAGGAGATGGAGAAGGAGCTGGCGGAAACGAAGAAGCGGTACACCTCCAAACGCCAACCGATACTGGACGCGATCGAGGCCAAACAGCAGAAGCGGCAGCAAAAGCTGGAAGAGTTCTGAGTAGTGTGTCGGCGGTGGTCGGGAATGCTTTCCCCCCTCTCCCAGCTTCTTGTCCCGTTTGCCTTTGGCGTGTGCTTGAGGGTGATTAGCGGATAGTCATATTTAAATAGGAATAGGTTTCCCGTTTCTGTGGCCCCAGCGCCAATTAGTTGCAAATTCCTATTACTTTTTAACAAACAAACACACATCCACAGCCTACTCAGTCGCGCTCAAGGGACACTCAAGCGTTCAAAGTGAGCGCTTGAGCGCCTCTGACAGGCTGCTGAGGAGAGTGGAAGGGATAGTTTCCTCTCTTTTTAAGTATTTTAGTTGCCCCGTCGGCCATCCAACACTCTCGTCGGATGTGTGGCTGGTAGGGCTGATCTGATATTTGATTTTAATTAACACTCACAAAACACATGCCCTAGAACCAGCCGGGTGTAAGTCATTGTTGGATTTTTGGTCGTAACGCATTGATCTGAACTATCGATGAGATTAATCTGTTTTTAGCTTTTGCGCTCAGCTGCTGCTGGCACATGTGGCGCCAATGTGTATGTATTTGTTCGATCCCTTTCGCTTTACCACGCGCGCTCCGTCCCTAACTAAGCTAAGTGCAATGTGTTGCACGGTTTTATGTTTTATTCTTTTCTTTTTGTCGCTGTTATACATTGAGATACACTCCCATTCGCTGGTTAAACTAGGTAGAGCGAACACGCGGCTTGCTGACGCGGCTACATTGCCTTTTTCCCCTCGTTAACGATTAGTTGGCAAAATCCTTTTCCCTTGGAAGTCTCCATGCCAATCCGCAAAAGCATAAAGCAATTTATTGACNACTCGTTAATCGTTATTACAACCATTACAGCCCACAGCTGCGGG]
[+] EMBL BX617442 [GTATGATTCGCTTAAGTTTATGAACTACGAACAGCTCGAGCAACGGCTGGCCAGCCTGGACAAGGAGATGGAGAAGGAGCTGGCGGAAACGAAGAAGCGGTACACCTCCAAACGCCAACCGATACTGGACGCGATCGAGGCCAAACAGCAGAAGCGGCAGCAAAAGCTGGAAGAGTTCTGAGTAGTGTGTCGGCGGTGGTCGGGAATGCTTTCCCCCCTCTCCCAGCTTCTTGTCCCGTTTGCCTTTGGCGTGTGCTTGAGGGTGATTAGCGGATAGTCATATTTAAATAGGAATAGGTTTCCCGTTTCTGTGGCCCCAGCGCCAATTAGTTGCAAATTCCTATTACTTTTTAACAAACAAACACACATCCACAGCCTACTCAGTCGCGCTCAAGGGACACTCAAGCGTTCAAAGTGAGCGCTTGAGCGCGTCTGACAGGCTGCTGAGGAGAGTGGAAGGGATAGTTTCCTCTCTTTTTAAGTATTTTAGTTGgc ]
[+] EMBL BX614607 [ AGCGCGAGCAACGGCTGGCCAGCCCGGACAAGGAGATGGAGAAGGAGCTGGCGGAAACGAAGAAGCGGTACACCTCCAAACGCCAACCGATACTGGACGCGATCGAGGCCAAACAGCAGAAGCGGCAGCAAAAGCTGGAAGAGTTCTGAGTAGTGTGTCGGCGGTGGTCGGGAATGCGTCCCCCCCTCTCCCAGCTTCTTGTCCCGTTTGCCTTTGGCGTGTGCTCGAGGGTGATCAGCGGATAGTCATAGTCAAATAGGAAGAGGTTCCCCGTTTCTGTGGCCCCAGCGCCAATTAGTGGCAAATGCCGATGACTGTTGAACAAACAAACACACATCCACAGCCTACTCAGTCGCGCTCAAGGGACACTCAAGCGGTCAAAGTGAGCGCATGAGCGCCTCTGACAGGCTGCTGAGGAGAGTGGAAGGGAaa ]
[-] EMBL AGA285647 [ CTGAGTAGTGTGTCGGCGGTGGTCGGGAATGCTTTCCCCCCTCTCCCAGGTTCTTGTCCCGTTTGCTTTTGGCGTGTGCTTGAGGGTGATTAGCGGATAGTCATATTTAAATAGGAATAGGTTTCCCGTTTCTGTGGCCCCAGCGCCAATTAGTTGCAAATTCCTATTACTTTTTAACAAACAAACACACATCCACAGCCTACTCAGTCGCGCTCAAGGGACACTCAAGCGTTCAAAGTGAGCGCTTGAGCGCCTCTGACAGGCTGCTGAGGAGAGTGGAAGGGATAGTTTCCTCTCTTTTTAAGTATTTTAGTTGCCCCGTCGGCCATCCAACACTCTCGTCGGATGTGTGGCTGGTAGGGCTGATCTGATATTTGATTTTAATTAACACTCACAAAACACATGCCCTAGAACCAGCCGGGTGTAAGTCATTGTTGGATTTTTGGTCGTAACGCATTGATCTGAA ]
[+] EMBL BX627947 [ CATATTTAAATAGGAATAGGTTTCCCGTTTCTGTGGCCCCAGCGCCAATTAGTTGCAAATTCCTATTACTTTTTAACAAACAAACACACATCCACAGCCTACTCAGTCGCGCTCAAGGGACACTCAAGCGTTCAAAGTGAGCGCTTGAGCGCCTCTGACAGGCTGCTGAGGAGAGTGGAAGGGATAGTTTCCTCTCTTTTTAAGTATTTTAGTTGCCCCGTCGGCCATCCAACACTCTCGTCGGATGTGTGGCTGGTAGGGCTGATCTGATATTTGATTTTAATTAACACTCACAAAACACATGCCCTAGAACCAGCCGGGTGTAAGTCATTGTTGGATTTTTGGTCGTAACGCATTGATCTGAACTATCGATGAGATTAATCTGTTTTTAGCTTTTGCGCTCAGCTGCTGCTGGCACATGTGGCGCCAATGTGTATGTATTTGTTCGATCCCTTTCGCTTTACCACGCGCGCTCCGTCCCTAACTAAGCTAAGTGCAATGTGTTGCACGGTTTTATGTTTTATTCTTTTCTTTTTGTCGCTGTTATACATTGAGATACACTCCCATTCGCTGGTTAAACTAGGTAGAGCGAACACGCGGCTTGCTGACGCGGCTACATTGCCTTTTTCCCCTCGTTAACGATTAGTTGGCAAAATCCTTTTCCCTTGGAAGTCTCCATGCCAATCCGCAAAAGCATAAAGCAATTTATTGACNACTCGTTAATCGTTATTACAACCATTACAGCCCACAGCTGCGGG]
[-] EMBL AGA285550 [ TTCCCGTTTCTGTGGCCCCAGCGCCAATTAGTTGCAAATTCGTATTACTTTTTAACAAACAAACACACATCCACAGCATACTCAGTCGCGCTCAAGGGACACTCAAGCGTTCAAAGTGAGCGCTTGAGCGCCTCTGACAGGCTGCTGAGGAGAGTGGAAGGGATAGTTTCCTCTCTTTTTAAGTATTTTAGTTGCCCCGTCGGCCATCCAACACTCTCGTCGGATGTGTGGCTGGTAGGGCTGATCTGATATTT ]
consensusID : consensus_7405#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence
[GCAGATCGCCACGAGGTCAAGCTGGTTAACTAGGTAGAGCGAACACGCGGCTTGNTTGACGCGGCTACATTGCCTTTTTCCCCTCGTTAACGATTAGTTGGCAAAATCCTTTTCCCTTGGAAGTCTCCATGCCAATCCGCAAAAGCATAAAGCAATTTATTGACAAACTCGTTAAATCGTTATTACAACATTACAGGCCACAGACTGCGGGGCTGTGCACGAACAGGTAAGTACAGGGGGGNAGGGGNGACGCGGGCACAGAGAACAGTCTCTAGCCAGCAGGAAACAAAGCGATTCTAAGCGAACCGTGAATAACATACCTTGACACACAACGGAGCNANAAGCCTCAAACAGCCTTAAACCCCGGGGAAAACNCAAAGAATCTCTGCACACAAGGTAAGAAATAACCAGAAGTAAATCCCTGGTTAACGCGGCGGCCGGGACGCACAGACACACGGGCCACANNGCAAACTTGTCGATAAACCCATAATTAAACCAAAACAACGAACAATAACTTAACCAATTAATAACGGCCCCAAGGCAAAATGGCACAGGCCGNTTACTGACACTTTTTAACCCGAAATTTCTATTACATAACCACCCCAATAATTACACAGGCGGACA]
[+] EMBL AL696741 [GCAGATCGCCACGAGGTCAAGCTGGTTAACTAGGTAGAGCGAACACGCGGCTTGNTTGACGCGGCTACATTGCCTTTTTCCCCTCGTTAACGATTAGTTGGCAAAATCCTTTTCCCTTGGAAGTCTCCATGCCAATCCGCAAAAGCATAAAGCAATTTATTGACAAACTCGTTAAATCGTTATTACAACATTACAGGCCACAGACTGCGGGGCTGTGCACGAACAGGTAAGTACAGGGGGGNAGGGGNGACGCGGGCACAGAGAACAGTCTCTAGCCAGCAGGAAACAAAGCGATTCTAAGCGAACCGTGAATAACATACCTTGACACACAACGGAGCNANAAGCCTCAAACAGCCTTAAACCCCGGGGAAAACNCAAAGAATCTCTGCACACAAGGTAAGAAATAACCAGAAGTAAATCCCTGGTTAACGCGGCGGCCGGGACGCACAGACACACGGGCCACANNGCAAACTTGTCGATAAACCCATAATTAAACCAAAACAACGAACAATAACTTAACCAATTAATAACGGCCCCAAGGCAAAATGGCACAGGCCGNTTACTGACACTTTTTAACCCGAAATTTCTATTACATAACCACCCCAATAATTACACAGGCGGACA]
consensusID : consensus_7405#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 181 fasta sequence
[CCGGTCGTGCTCACGGGACACTGAAGCGTTCAAAGCGAGCGCTTGAGTGTCTCTGGCGGGCTGTTGAGGAGAGTGGAAGAGATAGTTTCCTCTCTTTTTAAGTATTTTAGTTGCCCCGTCGGCCATCCAACACTTTCGTCGGATGTGTGGCTGGTAAGGCTGATCTGATTTGGATTTAATT]
[+] EMBL BM639219 [CCGGTCGTGCTCACGGGACACTGAAGCGTTCAAAGCGAGCGCTTGAGTGTCTCTGGCGGGCTGTTGAGGAGAGTGGAAGAGATAGTTTCCTCTCTTTTTAAGTATTTTAGTTGCCCCGTCGGCCATCCAACACTTTCGTCGGATGTGTGGCTGGTAAGGCTGATCTGATTTGGATTTAATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7405#0 GTATGATTCGCTTAAGTTTATGAACTACGAACAGCTCGAGCAACGGCTGGCCAGCCTGGA 60
consensus_7405#2 ------------------------------------------------------------
consensus_7405#1 --------------------------------------------------GCAGATCGCC 10
consensus_7405#0 CAAGGAGATGGAGAAGGAGCTGGCGGAAACGAAGAAGCGGTACACCTCCAAACGCCAACC 120
consensus_7405#2 ------------------------------------------------------------
consensus_7405#1 ACGAGGTCAAGCTGGTTAACTAGGTAGAGCGAACACGCGGCTTGNTTG-ACGCGGCTACA 69
consensus_7405#0 GATACTGGACGCGATCGAGGCCAAACAGCAGAAGCGGCAGCAAAAGCTGGAAGAGTTCTG 180
consensus_7405#2 ------------------------------------------------------------
consensus_7405#1 TTGCCTTTTTCCCCTCGTTAACGATTAGTTGGCAAAATCCTTTTCCCTTGGAAGTCTCCA 129
consensus_7405#0 AGTAGTGTGTCGGCGGTGGTCGGGAATGCTTTCCCCCCTCTCCCAGCTTCTTGTCCCGTT 240
consensus_7405#2 ------------------------------------------------------------
consensus_7405#1 TGCCAATCCGCAAAAGCATAAAGCAATTTATTGACAAACTCGTTAAATCGTTATTACAAC 189
consensus_7405#0 TGCCTTTGGCGTGTGCTTGAGGGTGATTAGCGGATAGTCATATTTAAATAGGAATAGGTT 300
consensus_7405#2 ------------------------------------------------------------
consensus_7405#1 ATTACAGGCCACAGACTGCGGGGCTGTGCACGAACAGGTAAGTACAGGGGGGNAGGGGNG 249
consensus_7405#0 TCCCGTTTCTGTGGCCCCAGCGCCAATTAGTTGCAAATTCCTATTACTTTTTAACAAACA 360
consensus_7405#2 ------------------------------------------------------------
consensus_7405#1 ACGCGGGCACAGAGAACAGTCTCTAGCCAGCAGGAAA--CAAAGCGATTCTAAGCGAAC- 306
consensus_7405#0 AACACACATCCACAGCCTACTCAGTCGCGCTCAAGGGACACTCAAGCGTTCAAAG----T 416
consensus_7405#2 --------------------CCGGTCGTGCTCACGGGACACTGAAGCGTTCAAAG----C 36
consensus_7405#1 ------CGTGAATAACATACCTTG--ACACACAACGGAGCNANAAGCCTCAAACAGCCTT 358
* * ** *** **** * **
consensus_7405#0 GAGCGCTTGAGCGCCTCTGACAGGCTGCTGAGGAGAGTGGAAGGGATAGTTTCCTCTC-- 474
consensus_7405#2 GAGCGCTTGAGTGTCTCTGGCGGGCTGTTGAGGAGAGTGGAAGAGATAGTTTCCTCTC-- 94
consensus_7405#1 AAACCCCGGGGAAAACNCAAAGAATCTCTGCACACAAGGTAAGAAATAACCAGAAGTAAA 418
* * * * * ** * * * *** *** *
consensus_7405#0 TTTTTAAGTATTTTAGTTGCCCCGTCGGCCATCCAACACTCTCGTCGGATGTGTGGCTGG 534
consensus_7405#2 TTTTTAAGTATTTTAGTTGCCCCGTCGGCCATCCAACACTTTCGTCGGATGTGTGGCTGG 154
consensus_7405#1 TCCCTGGTTAACGCGGCGGCCGGGACGCACA---GACACACGGGCCACANNGCAAACTTG 475
* * ** * *** * ** ** **** * * * ** *
consensus_7405#0 TAGGGCTGATCTGATATTTGATTTTAATTAACACTCACAAAACACATGCCCTAGAACCAG 594
consensus_7405#2 TAAGGCTGATCTGA--TTTGGATTTAATT------------------------------- 181
consensus_7405#1 TCGA--TAAACCCATAATTAAACCAAAACAACGAACAATAACTTAACCAATTAATAACGG 533
* * * * * ** **
consensus_7405#0 CCGGGTGTAAGTCATTGTTGGATTTTTGGTCGTAACGCATTGATCTGAACTATCGATGAG 654
consensus_7405#2 ------------------------------------------------------------
consensus_7405#1 CCCCAAGGCAAAATGGCACAGGCCGNTTACTGACACTTTTTAACCCGAAATTTCTATTAC 593
consensus_7405#0 ATTAATCTGTTTTTAGCTTTTGCGCTCAGCTGCTGCTGGCACATGTGGCGCCAATGTGTA 714
consensus_7405#2 ------------------------------------------------------------
consensus_7405#1 ATAACCACCCCAATAATTACACAGGCGGACA----------------------------- 624
consensus_7405#0 TGTATTTGTTCGATCCCTTTCGCTTTACCACGCGCGCTCCGTCCCTAACTAAGCTAAGTG 774
consensus_7405#2 ------------------------------------------------------------
consensus_7405#1 ------------------------------------------------------------
consensus_7405#0 CAATGTGTTGCACGGTTTTATGTTTTATTCTTTTCTTTTTGTCGCTGTTATACATTGAGA 834
consensus_7405#2 ------------------------------------------------------------
consensus_7405#1 ------------------------------------------------------------
consensus_7405#0 TACACTCCCATTCGCTGGTTAAACTAGGTAGAGCGAACACGCGGCTTGCTGACGCGGCTA 894
consensus_7405#2 ------------------------------------------------------------
consensus_7405#1 ------------------------------------------------------------
consensus_7405#0 CATTGCCTTTTTCCCCTCGTTAACGATTAGTTGGCAAAATCCTTTTCCCTTGGAAGTCTC 954
consensus_7405#2 ------------------------------------------------------------
consensus_7405#1 ------------------------------------------------------------
consensus_7405#0 CATGCCAATCCGCAAAAGCATAAAGCAATTTATTGACNACTCGTTAATCGTTATTACAAC 1014
consensus_7405#2 ------------------------------------------------------------
consensus_7405#1 ------------------------------------------------------------
consensus_7405#0 CATTACAGCCCACAGCTGCGGG 1036
consensus_7405#2 ----------------------
consensus_7405#1 ----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||