These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7405#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1036 fasta sequence [GTATGATTCGCTTAAGTTTATGAACTACGAACAGCTCGAGCAACGGCTGGCCAGCCTGGACAAGGAGATGGAGAAGGAGCTGGCGGAAACGAAGAAGCGGTACACCTCCAAACGCCAACCGATACTGGACGCGATCGAGGCCAAACAGCAGAAGCGGCAGCAAAAGCTGGAAGAGTTCTGAGTAGTGTGTCGGCGGTGGTCGGGAATGCTTTCCCCCCTCTCCCAGCTTCTTGTCCCGTTTGCCTTTGGCGTGTGCTTGAGGGTGATTAGCGGATAGTCATATTTAAATAGGAATAGGTTTCCCGTTTCTGTGGCCCCAGCGCCAATTAGTTGCAAATTCCTATTACTTTTTAACAAACAAACACACATCCACAGCCTACTCAGTCGCGCTCAAGGGACACTCAAGCGTTCAAAGTGAGCGCTTGAGCGCCTCTGACAGGCTGCTGAGGAGAGTGGAAGGGATAGTTTCCTCTCTTTTTAAGTATTTTAGTTGCCCCGTCGGCCATCCAACACTCTCGTCGGATGTGTGGCTGGTAGGGCTGATCTGATATTTGATTTTAATTAACACTCACAAAACACATGCCCTAGAACCAGCCGGGTGTAAGTCATTGTTGGATTTTTGGTCGTAACGCATTGATCTGAACTATCGATGAGATTAATCTGTTTTTAGCTTTTGCGCTCAGCTGCTGCTGGCACATGTGGCGCCAATGTGTATGTATTTGTTCGATCCCTTTCGCTTTACCACGCGCGCTCCGTCCCTAACTAAGCTAAGTGCAATGTGTTGCACGGTTTTATGTTTTATTCTTTTCTTTTTGTCGCTGTTATACATTGAGATACACTCCCATTCGCTGGTTAAACTAGGTAGAGCGAACACGCGGCTTGCTGACGCGGCTACATTGCCTTTTTCCCCTCGTTAACGATTAGTTGGCAAAATCCTTTTCCCTTGGAAGTCTCCATGCCAATCCGCAAAAGCATAAAGCAATTTATTGACNACTCGTTAATCGTTATTACAACCATTACAGCCCACAGCTGCGGG] [+] EMBL BX617442 [GTATGATTCGCTTAAGTTTATGAACTACGAACAGCTCGAGCAACGGCTGGCCAGCCTGGACAAGGAGATGGAGAAGGAGCTGGCGGAAACGAAGAAGCGGTACACCTCCAAACGCCAACCGATACTGGACGCGATCGAGGCCAAACAGCAGAAGCGGCAGCAAAAGCTGGAAGAGTTCTGAGTAGTGTGTCGGCGGTGGTCGGGAATGCTTTCCCCCCTCTCCCAGCTTCTTGTCCCGTTTGCCTTTGGCGTGTGCTTGAGGGTGATTAGCGGATAGTCATATTTAAATAGGAATAGGTTTCCCGTTTCTGTGGCCCCAGCGCCAATTAGTTGCAAATTCCTATTACTTTTTAACAAACAAACACACATCCACAGCCTACTCAGTCGCGCTCAAGGGACACTCAAGCGTTCAAAGTGAGCGCTTGAGCGCGTCTGACAGGCTGCTGAGGAGAGTGGAAGGGATAGTTTCCTCTCTTTTTAAGTATTTTAGTTGgc ] [+] EMBL BX614607 [ AGCGCGAGCAACGGCTGGCCAGCCCGGACAAGGAGATGGAGAAGGAGCTGGCGGAAACGAAGAAGCGGTACACCTCCAAACGCCAACCGATACTGGACGCGATCGAGGCCAAACAGCAGAAGCGGCAGCAAAAGCTGGAAGAGTTCTGAGTAGTGTGTCGGCGGTGGTCGGGAATGCGTCCCCCCCTCTCCCAGCTTCTTGTCCCGTTTGCCTTTGGCGTGTGCTCGAGGGTGATCAGCGGATAGTCATAGTCAAATAGGAAGAGGTTCCCCGTTTCTGTGGCCCCAGCGCCAATTAGTGGCAAATGCCGATGACTGTTGAACAAACAAACACACATCCACAGCCTACTCAGTCGCGCTCAAGGGACACTCAAGCGGTCAAAGTGAGCGCATGAGCGCCTCTGACAGGCTGCTGAGGAGAGTGGAAGGGAaa ] [-] EMBL AGA285647 [ CTGAGTAGTGTGTCGGCGGTGGTCGGGAATGCTTTCCCCCCTCTCCCAGGTTCTTGTCCCGTTTGCTTTTGGCGTGTGCTTGAGGGTGATTAGCGGATAGTCATATTTAAATAGGAATAGGTTTCCCGTTTCTGTGGCCCCAGCGCCAATTAGTTGCAAATTCCTATTACTTTTTAACAAACAAACACACATCCACAGCCTACTCAGTCGCGCTCAAGGGACACTCAAGCGTTCAAAGTGAGCGCTTGAGCGCCTCTGACAGGCTGCTGAGGAGAGTGGAAGGGATAGTTTCCTCTCTTTTTAAGTATTTTAGTTGCCCCGTCGGCCATCCAACACTCTCGTCGGATGTGTGGCTGGTAGGGCTGATCTGATATTTGATTTTAATTAACACTCACAAAACACATGCCCTAGAACCAGCCGGGTGTAAGTCATTGTTGGATTTTTGGTCGTAACGCATTGATCTGAA ] [+] EMBL BX627947 [ CATATTTAAATAGGAATAGGTTTCCCGTTTCTGTGGCCCCAGCGCCAATTAGTTGCAAATTCCTATTACTTTTTAACAAACAAACACACATCCACAGCCTACTCAGTCGCGCTCAAGGGACACTCAAGCGTTCAAAGTGAGCGCTTGAGCGCCTCTGACAGGCTGCTGAGGAGAGTGGAAGGGATAGTTTCCTCTCTTTTTAAGTATTTTAGTTGCCCCGTCGGCCATCCAACACTCTCGTCGGATGTGTGGCTGGTAGGGCTGATCTGATATTTGATTTTAATTAACACTCACAAAACACATGCCCTAGAACCAGCCGGGTGTAAGTCATTGTTGGATTTTTGGTCGTAACGCATTGATCTGAACTATCGATGAGATTAATCTGTTTTTAGCTTTTGCGCTCAGCTGCTGCTGGCACATGTGGCGCCAATGTGTATGTATTTGTTCGATCCCTTTCGCTTTACCACGCGCGCTCCGTCCCTAACTAAGCTAAGTGCAATGTGTTGCACGGTTTTATGTTTTATTCTTTTCTTTTTGTCGCTGTTATACATTGAGATACACTCCCATTCGCTGGTTAAACTAGGTAGAGCGAACACGCGGCTTGCTGACGCGGCTACATTGCCTTTTTCCCCTCGTTAACGATTAGTTGGCAAAATCCTTTTCCCTTGGAAGTCTCCATGCCAATCCGCAAAAGCATAAAGCAATTTATTGACNACTCGTTAATCGTTATTACAACCATTACAGCCCACAGCTGCGGG] [-] EMBL AGA285550 [ TTCCCGTTTCTGTGGCCCCAGCGCCAATTAGTTGCAAATTCGTATTACTTTTTAACAAACAAACACACATCCACAGCATACTCAGTCGCGCTCAAGGGACACTCAAGCGTTCAAAGTGAGCGCTTGAGCGCCTCTGACAGGCTGCTGAGGAGAGTGGAAGGGATAGTTTCCTCTCTTTTTAAGTATTTTAGTTGCCCCGTCGGCCATCCAACACTCTCGTCGGATGTGTGGCTGGTAGGGCTGATCTGATATTT ] consensusID : consensus_7405#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence [GCAGATCGCCACGAGGTCAAGCTGGTTAACTAGGTAGAGCGAACACGCGGCTTGNTTGACGCGGCTACATTGCCTTTTTCCCCTCGTTAACGATTAGTTGGCAAAATCCTTTTCCCTTGGAAGTCTCCATGCCAATCCGCAAAAGCATAAAGCAATTTATTGACAAACTCGTTAAATCGTTATTACAACATTACAGGCCACAGACTGCGGGGCTGTGCACGAACAGGTAAGTACAGGGGGGNAGGGGNGACGCGGGCACAGAGAACAGTCTCTAGCCAGCAGGAAACAAAGCGATTCTAAGCGAACCGTGAATAACATACCTTGACACACAACGGAGCNANAAGCCTCAAACAGCCTTAAACCCCGGGGAAAACNCAAAGAATCTCTGCACACAAGGTAAGAAATAACCAGAAGTAAATCCCTGGTTAACGCGGCGGCCGGGACGCACAGACACACGGGCCACANNGCAAACTTGTCGATAAACCCATAATTAAACCAAAACAACGAACAATAACTTAACCAATTAATAACGGCCCCAAGGCAAAATGGCACAGGCCGNTTACTGACACTTTTTAACCCGAAATTTCTATTACATAACCACCCCAATAATTACACAGGCGGACA] [+] EMBL AL696741 [GCAGATCGCCACGAGGTCAAGCTGGTTAACTAGGTAGAGCGAACACGCGGCTTGNTTGACGCGGCTACATTGCCTTTTTCCCCTCGTTAACGATTAGTTGGCAAAATCCTTTTCCCTTGGAAGTCTCCATGCCAATCCGCAAAAGCATAAAGCAATTTATTGACAAACTCGTTAAATCGTTATTACAACATTACAGGCCACAGACTGCGGGGCTGTGCACGAACAGGTAAGTACAGGGGGGNAGGGGNGACGCGGGCACAGAGAACAGTCTCTAGCCAGCAGGAAACAAAGCGATTCTAAGCGAACCGTGAATAACATACCTTGACACACAACGGAGCNANAAGCCTCAAACAGCCTTAAACCCCGGGGAAAACNCAAAGAATCTCTGCACACAAGGTAAGAAATAACCAGAAGTAAATCCCTGGTTAACGCGGCGGCCGGGACGCACAGACACACGGGCCACANNGCAAACTTGTCGATAAACCCATAATTAAACCAAAACAACGAACAATAACTTAACCAATTAATAACGGCCCCAAGGCAAAATGGCACAGGCCGNTTACTGACACTTTTTAACCCGAAATTTCTATTACATAACCACCCCAATAATTACACAGGCGGACA] consensusID : consensus_7405#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 181 fasta sequence [CCGGTCGTGCTCACGGGACACTGAAGCGTTCAAAGCGAGCGCTTGAGTGTCTCTGGCGGGCTGTTGAGGAGAGTGGAAGAGATAGTTTCCTCTCTTTTTAAGTATTTTAGTTGCCCCGTCGGCCATCCAACACTTTCGTCGGATGTGTGGCTGGTAAGGCTGATCTGATTTGGATTTAATT] [+] EMBL BM639219 [CCGGTCGTGCTCACGGGACACTGAAGCGTTCAAAGCGAGCGCTTGAGTGTCTCTGGCGGGCTGTTGAGGAGAGTGGAAGAGATAGTTTCCTCTCTTTTTAAGTATTTTAGTTGCCCCGTCGGCCATCCAACACTTTCGTCGGATGTGTGGCTGGTAAGGCTGATCTGATTTGGATTTAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7405#0 GTATGATTCGCTTAAGTTTATGAACTACGAACAGCTCGAGCAACGGCTGGCCAGCCTGGA 60 consensus_7405#2 ------------------------------------------------------------ consensus_7405#1 --------------------------------------------------GCAGATCGCC 10 consensus_7405#0 CAAGGAGATGGAGAAGGAGCTGGCGGAAACGAAGAAGCGGTACACCTCCAAACGCCAACC 120 consensus_7405#2 ------------------------------------------------------------ consensus_7405#1 ACGAGGTCAAGCTGGTTAACTAGGTAGAGCGAACACGCGGCTTGNTTG-ACGCGGCTACA 69 consensus_7405#0 GATACTGGACGCGATCGAGGCCAAACAGCAGAAGCGGCAGCAAAAGCTGGAAGAGTTCTG 180 consensus_7405#2 ------------------------------------------------------------ consensus_7405#1 TTGCCTTTTTCCCCTCGTTAACGATTAGTTGGCAAAATCCTTTTCCCTTGGAAGTCTCCA 129 consensus_7405#0 AGTAGTGTGTCGGCGGTGGTCGGGAATGCTTTCCCCCCTCTCCCAGCTTCTTGTCCCGTT 240 consensus_7405#2 ------------------------------------------------------------ consensus_7405#1 TGCCAATCCGCAAAAGCATAAAGCAATTTATTGACAAACTCGTTAAATCGTTATTACAAC 189 consensus_7405#0 TGCCTTTGGCGTGTGCTTGAGGGTGATTAGCGGATAGTCATATTTAAATAGGAATAGGTT 300 consensus_7405#2 ------------------------------------------------------------ consensus_7405#1 ATTACAGGCCACAGACTGCGGGGCTGTGCACGAACAGGTAAGTACAGGGGGGNAGGGGNG 249 consensus_7405#0 TCCCGTTTCTGTGGCCCCAGCGCCAATTAGTTGCAAATTCCTATTACTTTTTAACAAACA 360 consensus_7405#2 ------------------------------------------------------------ consensus_7405#1 ACGCGGGCACAGAGAACAGTCTCTAGCCAGCAGGAAA--CAAAGCGATTCTAAGCGAAC- 306 consensus_7405#0 AACACACATCCACAGCCTACTCAGTCGCGCTCAAGGGACACTCAAGCGTTCAAAG----T 416 consensus_7405#2 --------------------CCGGTCGTGCTCACGGGACACTGAAGCGTTCAAAG----C 36 consensus_7405#1 ------CGTGAATAACATACCTTG--ACACACAACGGAGCNANAAGCCTCAAACAGCCTT 358 * * ** *** **** * ** consensus_7405#0 GAGCGCTTGAGCGCCTCTGACAGGCTGCTGAGGAGAGTGGAAGGGATAGTTTCCTCTC-- 474 consensus_7405#2 GAGCGCTTGAGTGTCTCTGGCGGGCTGTTGAGGAGAGTGGAAGAGATAGTTTCCTCTC-- 94 consensus_7405#1 AAACCCCGGGGAAAACNCAAAGAATCTCTGCACACAAGGTAAGAAATAACCAGAAGTAAA 418 * * * * * ** * * * *** *** * consensus_7405#0 TTTTTAAGTATTTTAGTTGCCCCGTCGGCCATCCAACACTCTCGTCGGATGTGTGGCTGG 534 consensus_7405#2 TTTTTAAGTATTTTAGTTGCCCCGTCGGCCATCCAACACTTTCGTCGGATGTGTGGCTGG 154 consensus_7405#1 TCCCTGGTTAACGCGGCGGCCGGGACGCACA---GACACACGGGCCACANNGCAAACTTG 475 * * ** * *** * ** ** **** * * * ** * consensus_7405#0 TAGGGCTGATCTGATATTTGATTTTAATTAACACTCACAAAACACATGCCCTAGAACCAG 594 consensus_7405#2 TAAGGCTGATCTGA--TTTGGATTTAATT------------------------------- 181 consensus_7405#1 TCGA--TAAACCCATAATTAAACCAAAACAACGAACAATAACTTAACCAATTAATAACGG 533 * * * * * ** ** consensus_7405#0 CCGGGTGTAAGTCATTGTTGGATTTTTGGTCGTAACGCATTGATCTGAACTATCGATGAG 654 consensus_7405#2 ------------------------------------------------------------ consensus_7405#1 CCCCAAGGCAAAATGGCACAGGCCGNTTACTGACACTTTTTAACCCGAAATTTCTATTAC 593 consensus_7405#0 ATTAATCTGTTTTTAGCTTTTGCGCTCAGCTGCTGCTGGCACATGTGGCGCCAATGTGTA 714 consensus_7405#2 ------------------------------------------------------------ consensus_7405#1 ATAACCACCCCAATAATTACACAGGCGGACA----------------------------- 624 consensus_7405#0 TGTATTTGTTCGATCCCTTTCGCTTTACCACGCGCGCTCCGTCCCTAACTAAGCTAAGTG 774 consensus_7405#2 ------------------------------------------------------------ consensus_7405#1 ------------------------------------------------------------ consensus_7405#0 CAATGTGTTGCACGGTTTTATGTTTTATTCTTTTCTTTTTGTCGCTGTTATACATTGAGA 834 consensus_7405#2 ------------------------------------------------------------ consensus_7405#1 ------------------------------------------------------------ consensus_7405#0 TACACTCCCATTCGCTGGTTAAACTAGGTAGAGCGAACACGCGGCTTGCTGACGCGGCTA 894 consensus_7405#2 ------------------------------------------------------------ consensus_7405#1 ------------------------------------------------------------ consensus_7405#0 CATTGCCTTTTTCCCCTCGTTAACGATTAGTTGGCAAAATCCTTTTCCCTTGGAAGTCTC 954 consensus_7405#2 ------------------------------------------------------------ consensus_7405#1 ------------------------------------------------------------ consensus_7405#0 CATGCCAATCCGCAAAAGCATAAAGCAATTTATTGACNACTCGTTAATCGTTATTACAAC 1014 consensus_7405#2 ------------------------------------------------------------ consensus_7405#1 ------------------------------------------------------------ consensus_7405#0 CATTACAGCCCACAGCTGCGGG 1036 consensus_7405#2 ---------------------- consensus_7405#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||