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Anopheles gambiae
cluster # 7418 cluster # 7418       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7418#0 length = 896 sequences # 5  
consensus_7418#1 length = 549 sequences # 1  
consensus_7418#2 length = 548 sequences # 1  

consensusID : consensus_7418#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 896
fasta sequence
                              [GAATCGCCCGAGGACAATTCGCCAGAATCACTAGCACGCACGGGGGAGAGAAATGTTTTCTTTTGTACTAAATTCTCCTCCCTAACGAACTGCATCCTGCAACAATGCAAATGTGAGAAAGCAGCGACTCTATAAACAAAGGAACCAGATAAC--AAAAAAAATCTAAATTTAAAGATACTTTAACTGGGGGTGTATTGTAAACGGAAAACGGTGATTGTTGCTAGGAACTTGTATGACCACACGGATAATATTACTAGAGTGAGAAAGAGAAACGGACAAACTTTTAGGGAAAATGAATGCAAAACTTTTACTACACCAGTGAACAATAGCGGTGGCAGTAGCGGTGTCGTTGTGCTGGCAAGGAA-GGGAAGAACAATTAATCGAACCAACCAATTTGCTGCTTACTACTACTAACGATGGAACAGTGTTGGAAGGGATACAATGAACGAGCAAGGCAAAAGCCGCCGGTGTAGTAATGCAGGATGGTTGCGTTTAGATTTGCTAAATTATAACTATAACTACTATACTAATGATATACTTTATTGTAATTTATGAATACAGACACAGTTAAGCAGCTGTTGGAAAATGGTAAAAAAATGAGATCGGGAACATTCAGCTCATGGCACACACATACACCCATACATTTGCGCGCTTATACGAGAAGAAAGCAGGAAACGGCGGCGCAAGATGAAGCTGAAATTTTGTTGAAGGTTTTTTTTTGTCAGATTCAAGTGAGGAAAAGGGTCANGTTACGGTTTTCAAAATGACCGGTGTGGGAAAGGGTGCGAAATGCGATAGATACTAACCATAAGAAATGAAAGTAATTAACATCTTACTCAGTACTGCGAGAAGCATAGCTCATCACGGCAAGTTGCACATGGTGTTTAGAGCAATAT]

[+] EMBL AL932461             [GAATCGCCCGAGGACAATTCGCCAGAATCACTAGCACGCACGGGGGAGAGAAATGTTTTCTTTTGTACTAAATTCTCCTCCCTAACGAACTGCATCCTGCAACAATGCAAATGTGAGAAAGCAGCGACTCTATAAACAAAGGAACCAGATAAC  AAAAAAAATCTAAATTTAAAGATACTTTAACTGGGGGTGTATTGTAAACGGAAAACGGTGATTGTTGCTAGGAACTTGTATGACCACACGGATAATATTACTAGAGTGAGAAAGAGAAACGGACAAACTTTTAGGGAAAATGAATGCAAAACTTTTACTACACCAGTGAACAATAGCNGTGGCAGTAGCGGTGTCGTTGTGCTGGCAAGGAACGGGAAGAACAATTAATCGAACCAACCAATTTGCTGCTTACTACTACTAACGATGGAACAGTGTTGGAAGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX615416             [                                                   AATGTTTTCTTTTGTACTAAATTCTCCTCCCTAACGAACTGCATCCTGCAACAATGCAAATGTGAGAAAGCAGCGACTCTATAAACAAAGGAACCAGATAACAAAAAAAAAATCTAAATTTAAAGATACTTTAACTGGGGGTGTATTGTAAACGGAAAACGGTGATTGTTGCTAGGAACTTGTATGACCACACGGATAATATTACTAGAGTGAGAAAGAGAAACGGACAAACTTTTAGGGAAAATGAATGCAAAACTTTTACTACACCAGTGAACAATAGCGGTGGCAGTAGCGGTGTCGTTGTGCTGGCAAGGAA GGGAAGAACAATTAATCGAACCAACCAATTTGCTGCTTACTACTACTAACGATGGAACAGTGTTGGAAGGGATACAATGAACGAGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX621515             [                                                                                                    AACAATGCAAATGTGAGAAAGCAGCGACTCTATAAACAAAGGAACCAGATAAC  AAAAAAAATCTAAATTTAAAGATACTTTAACTGGGGGTGTATTGTAAACGGAAAACGGTGATTGTTGCTAGGAACTTGTATGACCACACGGATAATATTACTAGAGTGAGAAAGAGAAACGGACAAACTTTTAGGGAAAATGAATGCAAAACTTTTACTACACCAGTGAACAATAGCGGTGGCAGTAGCGGTGTCGTTGTGCTGGCAAGGAA GGGAAGAACAATTAATCGAACCAACCAATTTGCTGCTTACTACTACTAACGATGGAACAGTGTTGGAAGGGATACAATGAACGAGCAAGGCAAAAGCCGCCGGTGTAGTAATGCAGGATGGTTGCGTTTAGATTTGCTAAATTATAACTATAACTACTATACTAATGATATACTTTATTGTAATTTATGAATACAGACACAGTTAAGCAGCTGTTGGAAAATGGTAAAAAAATGAGATCGGGAACATTCAGCTCATGGCACACACATACACCCATACATTTGCGCGCTTATACGAGAAGAAAGCAGGAAACGGCGGCGCAAGATGAAGCTGAAATTTTGTTGAAGGTTTTTTTTTGTCAGATTCAAGTGAGGAAAAGGGTCANGTTACGGTTTTCAAAATGACCGGTGTGGGAAAGGGTGCGAAATGCGATAGATACTAACCATAAGAAATGAAAGTAATTAACATCTTACTCAGTACTGCGAGAAGCATAGCTCATCACGGCAAGTTGCACATGGTGTTTAGAGCAATAT]
[+] EMBL BX613228             [                                                                                                                                                                                                 GTATTGTAAACGGAAAACGGTGATTGTTGCTAGGAACTTGTATGACCACACGGATAATATTACTAGAGTGAGAAAGAGAAACGGACAAACTTTTAGGGAAAATGAATGCAAAACTTTTACTACACCAGTGAACAATAGCGGGGGCAGTAGCGGTGTCGTTGTGCTGGCAAGGAA GGGAAGAACAATTAATCGAACCAACCAATTTGCTGCTTACTACTACTAACGATGGAACAGTGTTGGAAGGGATACAATGAACGAGCAAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BX604495             [                                                                                                                                                                                                                    GTGATTGTTGCTAGGAACTTGTATGACCACACGGATAATATTACTAGAGTGAGAAAGAGAAACGGACAAACTTTTAGGGAAAATGAATGCAAAACTTTTACTACACCAGTGAACAATAGCGGTGGCAGTAGCGGTGTCGTTGTGCTGGCAAGGAA GGGAAGAACAATTAATCGAACCAACCAATTTGCTGCTTACTACTACTAACGATGGAACAGTGTTGGAAGGGATACAATGAACGAGCAAGGCAAAAGCCGCCGGTGTAGTAATGCAGGATGGTTGCGTTTAGATTTGCTAAATTATAACTATAACTACTATACTAATGATATACTTTATTGTAATTTATGAATACAGACACAGTTAAGCAGCTGTTGGAAAATGGTAAAAAAATGAGATCGGGAACATTCAGCTCATGGCACACACATACACCCATACATTTGCGCGCTTATACGAGAAGAAAGCAGGAAACGGCGGCGCAAGATGAAGCTGAAATTTTGTTGA                                                                                                                                                                                            ]


>consensus_7418#0 GAATCGCCCGAGGACAATTCGCCAGAATCACTAGCACGCACGGGGGAGAGAAATGTTTTC TTTTGTACTAAATTCTCCTCCCTAACGAACTGCATCCTGCAACAATGCAAATGTGAGAAA GCAGCGACTCTATAAACAAAGGAACCAGATAACAAAAAAAATCTAAATTTAAAGATACTT TAACTGGGGGTGTATTGTAAACGGAAAACGGTGATTGTTGCTAGGAACTTGTATGACCAC ACGGATAATATTACTAGAGTGAGAAAGAGAAACGGACAAACTTTTAGGGAAAATGAATGC AAAACTTTTACTACACCAGTGAACAATAGCGGTGGCAGTAGCGGTGTCGTTGTGCTGGCA AGGAAGGGAAGAACAATTAATCGAACCAACCAATTTGCTGCTTACTACTACTAACGATGG AACAGTGTTGGAAGGGATACAATGAACGAGCAAGGCAAAAGCCGCCGGTGTAGTAATGCA GGATGGTTGCGTTTAGATTTGCTAAATTATAACTATAACTACTATACTAATGATATACTT TATTGTAATTTATGAATACAGACACAGTTAAGCAGCTGTTGGAAAATGGTAAAAAAATGA GATCGGGAACATTCAGCTCATGGCACACACATACACCCATACATTTGCGCGCTTATACGA GAAGAAAGCAGGAAACGGCGGCGCAAGATGAAGCTGAAATTTTGTTGAAGGTTTTTTTTT GTCAGATTCAAGTGAGGAAAAGGGTCANGTTACGGTTTTCAAAATGACCGGTGTGGGAAA GGGTGCGAAATGCGATAGATACTAACCATAAGAAATGAAAGTAATTAACATCTTACTCAG TACTGCGAGAAGCATAGCTCATCACGGCAAGTTGCACATGGTGTTTAGAGCAATAT



consensusID : consensus_7418#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 549
fasta sequence
                              [GGGCAGAATTNGGCGCCCGAGGTGTNAAACTGTAAGCTAAAANCAACGATGTAGATTCATTAAAACTGGCAACAAACAACAACAAAAAAACACACACAAAACCGAGAAGGAAACTAACAGCAATGCAAAACAAACACAAGTAATCCACTAGGCGTAATATTTTACGTGTATCACAATCCCACTAGAAACTCCCGCTAAAAGTGATGAGATTTTCTAAACGCTAAATACTGTCGATGCATCAGCCAGCGATCATATATCAACAAATCAGAGACAAACAGACTACAAACATCTTACAAATTCGCCAGAATCACTAGCACGCACGGGGGAGAGAAATGTTTTCTTTTGTACTAAATTCTCCTCCCTAACGAACTGCATTCCTGCAACCAATGGCAAATGGTGAGAAAGCAGCGACTCCTATAAACAAAGGAACCAGATAACAAAAAAAATCTAAATTTAAAGATACTTTAACTGGGGGTGTATTGTAAACGGAAAACGGTGATGTGCTAGGAACTTGTATGACCACACGGATAATATTACTAGAGTGAGAAA]

[+] EMBL AL931449             [GGGCAGAATTNGGCGCCCGAGGTGTNAAACTGTAAGCTAAAANCAACGATGTAGATTCATTAAAACTGGCAACAAACAACAACAAAAAAACACACACAAAACCGAGAAGGAAACTAACAGCAATGCAAAACAAACACAAGTAATCCACTAGGCGTAATATTTTACGTGTATCACAATCCCACTAGAAACTCCCGCTAAAAGTGATGAGATTTTCTAAACGCTAAATACTGTCGATGCATCAGCCAGCGATCATATATCAACAAATCAGAGACAAACAGACTACAAACATCTTACAAATTCGCCAGAATCACTAGCACGCACGGGGGAGAGAAATGTTTTCTTTTGTACTAAATTCTCCTCCCTAACGAACTGCATTCCTGCAACCAATGGCAAATGGTGAGAAAGCAGCGACTCCTATAAACAAAGGAACCAGATAACAAAAAAAATCTAAATTTAAAGATACTTTAACTGGGGGTGTATTGTAAACGGAAAACGGTGATGTGCTAGGAACTTGTATGACCACACGGATAATATTACTAGAGTGAGAAA]


>consensus_7418#1 GGGCAGAATTNGGCGCCCGAGGTGTNAAACTGTAAGCTAAAANCAACGATGTAGATTCAT TAAAACTGGCAACAAACAACAACAAAAAAACACACACAAAACCGAGAAGGAAACTAACAG CAATGCAAAACAAACACAAGTAATCCACTAGGCGTAATATTTTACGTGTATCACAATCCC ACTAGAAACTCCCGCTAAAAGTGATGAGATTTTCTAAACGCTAAATACTGTCGATGCATC AGCCAGCGATCATATATCAACAAATCAGAGACAAACAGACTACAAACATCTTACAAATTC GCCAGAATCACTAGCACGCACGGGGGAGAGAAATGTTTTCTTTTGTACTAAATTCTCCTC CCTAACGAACTGCATTCCTGCAACCAATGGCAAATGGTGAGAAAGCAGCGACTCCTATAA ACAAAGGAACCAGATAACAAAAAAAATCTAAATTTAAAGATACTTTAACTGGGGGTGTAT TGTAAACGGAAAACGGTGATGTGCTAGGAACTTGTATGACCACACGGATAATATTACTAG AGTGAGAAA



consensusID : consensus_7418#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 548
fasta sequence
                              [CAGAATTCGCCACGAGGTTAGATTCATTAAAACTGCAACAACANACAACAAAAAAACACACACAAAAAGAGAAGTGAAACTAACAGCAATGCAAAACAAACACAAGTAATCCACTAGTGCGTAATATTTTTACGTGTATCACAATCCCACTAGAAACTCCCGCTAAAAGTGATGAGATTTTTTAAACGCTAAATACTGTCGATGCATCAGCCAGCGATCATATATCAACAAATCAGAGACAAACAGACTACAAACATCTTACAAATTCGCCAGAATCACTAGCACGCACGGGGGAGAGAAATGTTTTCTTTTTGTACTAAATTCTCCTCCCTAACGAACTGCATCCTGCAACGAATGCAAATGTGAGAAAGCAGGCGACGTCTATAGAACAAAGGAACCAGATAACAAAAGAACAATCTAAGATTTAAAGATACTTTAACTGGGGGTGTATTGTAAACGGAAAACGGTGATTGTTGCTAGGAACTTGTATGANCAGCACGATAATATTACTAGAGTGAGAAAGAGAAACGGACAAACTTTTAAGGGAA]

[+] EMBL BX467368             [CAGAATTCGCCACGAGGTTAGATTCATTAAAACTGCAACAACANACAACAAAAAAACACACACAAAAAGAGAAGTGAAACTAACAGCAATGCAAAACAAACACAAGTAATCCACTAGTGCGTAATATTTTTACGTGTATCACAATCCCACTAGAAACTCCCGCTAAAAGTGATGAGATTTTTTAAACGCTAAATACTGTCGATGCATCAGCCAGCGATCATATATCAACAAATCAGAGACAAACAGACTACAAACATCTTACAAATTCGCCAGAATCACTAGCACGCACGGGGGAGAGAAATGTTTTCTTTTTGTACTAAATTCTCCTCCCTAACGAACTGCATCCTGCAACGAATGCAAATGTGAGAAAGCAGGCGACGTCTATAGAACAAAGGAACCAGATAACAAAAGAACAATCTAAGATTTAAAGATACTTTAACTGGGGGTGTATTGTAAACGGAAAACGGTGATTGTTGCTAGGAACTTGTATGANCAGCACGATAATATTACTAGAGTGAGAAAGAGAAACGGACAAACTTTTAAGGGAA]


>consensus_7418#2 CAGAATTCGCCACGAGGTTAGATTCATTAAAACTGCAACAACANACAACAAAAAAACACA CACAAAAAGAGAAGTGAAACTAACAGCAATGCAAAACAAACACAAGTAATCCACTAGTGC GTAATATTTTTACGTGTATCACAATCCCACTAGAAACTCCCGCTAAAAGTGATGAGATTT TTTAAACGCTAAATACTGTCGATGCATCAGCCAGCGATCATATATCAACAAATCAGAGAC AAACAGACTACAAACATCTTACAAATTCGCCAGAATCACTAGCACGCACGGGGGAGAGAA ATGTTTTCTTTTTGTACTAAATTCTCCTCCCTAACGAACTGCATCCTGCAACGAATGCAA ATGTGAGAAAGCAGGCGACGTCTATAGAACAAAGGAACCAGATAACAAAAGAACAATCTA AGATTTAAAGATACTTTAACTGGGGGTGTATTGTAAACGGAAAACGGTGATTGTTGCTAG GAACTTGTATGANCAGCACGATAATATTACTAGAGTGAGAAAGAGAAACGGACAAACTTT TAAGGGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7418#1      ------------------------------------------------------------
consensus_7418#2      ------------------------------------------------------------
consensus_7418#0      GAATCGCCCGAGGACAATTCGCCAGAATCACTAGCACGCACGGGGGAGAGAAATGTTTTC 60
                                                                                  

consensus_7418#1      ------------------------------------------------------------
consensus_7418#2      ------------------------------------------------------------
consensus_7418#0      TTTTGTACTAAATTCTCCTCCCTAACGAACTGCATCCTGCAACAATGCAAATGTGAGAAA 120
                                                                                  

consensus_7418#1      ------------GGGCAGAATTNGGCGCCCGAGGTGTNAAACTGTAAGCTAAAANCA--A 46
consensus_7418#2      ------------------------------------------------CAGAATTCGCCA 12
consensus_7418#0      GCAGCGACTCTATAAACAAAGGAACCAGATAACAAAAAAAATCTAAATTTAAAGATACTT 180
                                                                         **       

consensus_7418#1      CGATGT-AGATTCATTA-AAACTGGCAACAAACAACAACAA-AAAAACACACACAAAACC 103
consensus_7418#2      CGAGGTTAGATTCATTA-AAACTG-CAACAACANACAACAA-AAAAACACACACAAAAAG 69
consensus_7418#0      TAACTGGGGGTGTATTGTAAACGGAAAACGGTGATTGTTGCTAGGAACTTGTATGACCAC 240
                        *     * *  ***  **** *  ***             *  ***    *  *    

consensus_7418#1      GAGAAGGAAACTAACAGCAATGCAAAACAAACACAAGTAATCCACTAG-GCGTAATATTT 162
consensus_7418#2      AGAAGTGAAACTAACAGCAATGCAAAACAAACACAAGTAATCCACTAGTGCGTAATATTT 129
consensus_7418#0      ACGGATAATATTACTAG-AGTGAGAAAGAGAAACGGACAAACTTTTAG-GGAAAATGAAT 298
                             * * **  ** * **  *** * * **    ** *   *** *   ***   *

consensus_7418#1      T-ACGTGTATCACAATCCCACTAGAAACTCCCGCTAAAAGTGATGAGATTTTCT------ 215
consensus_7418#2      TTACGTGTATCACAATCCCACTAGAAACTCCCGCTAAAAGTGATGAGATTTTTT------ 183
consensus_7418#0      GCAAAACTTTTACTACACCAGTGAACAATAGCGGTGGCAGTAGCGGTGTCGTTGTGCTGG 358
                        *    * * ** *  *** *  * * *  ** *   ***   *   *  *        

consensus_7418#1      ---AAACGCTAAATACTGTCGAT-GCATCAGCCAGC-----GATCATA-----TATCAAC 261
consensus_7418#2      ---AAACGCTAAATACTGTCGAT-GCATCAGCCAGC-----GATCATA-----TATCAAC 229
consensus_7418#0      CAAGGAAGGGAAGAACAATTAATCGAACCAACCAATTTGCTGCTTACTACTACTAACGAT 418
                           * *  **  **  *  ** * * ** ***       * * *       ** * * 

consensus_7418#1      AAATCAGAGACAAACAGACTACAAACATCTTACAAATTCGCCAGAATCACTAGCACGC-- 319
consensus_7418#2      AAATCAGAGACAAACAGACTACAAACATCTTACAAATTCGCCAGAATCACTAGCACGC-- 287
consensus_7418#0      GGAACAGTGTTGGAAGGGATACAATGAACGAGCAAG---GCAAAAGCCGCCGGTGTAGTA 475
                        * *** *    *  *  *****  * *   ***    ** * *  * *  *       

consensus_7418#1      ACGGGGGAGAGAAATGTTTTCTTTT-GTA--------CTAAATTCTCCTCCCTAACGAAC 370
consensus_7418#2      ACGGGGGAGAGAAATGTTTTCTTTTTGTA--------CTAAATTCTCCTCCCTAACGAAC 339
consensus_7418#0      ATGCAGGATGGTTGCGTTTAGATTTGCTAAATTATAACTATAACTACTATACTAATGATA 535
                      * *  ***  *    ****   ***  **        *** *    *    **** **  

consensus_7418#1      TGCATTCCTGCAACCAATGGCAAATGGTGAGAAAGC-AG-CGACTCCTATA-AAC---AA 424
consensus_7418#2      TGCAT-CCTGCAACGAATG-CAAATG-TGAGAAAGC-AGGCGACGTCTATAGAAC---AA 392
consensus_7418#0      TACTTTATTGTAATTTATG---AATACAGACACAGTTAAGCAGCTGTTGGAAAATGGTAA 592
                      * * *   ** **   ***   ***   ** * **  *  *  *   *  * **    **

consensus_7418#1      AGGAACCAGATAACAAAAAAA--ATCTAA-ATTTAAAGATAC-----TTTAACTGGGGGT 476
consensus_7418#2      AGGAACCAGATAACAAAAGAACAATCTAAGATTTAAAGATAC-----TTTAACTGGGGGT 447
consensus_7418#0      AAAAATGAGATCGGGAACATTCAGCTCATGGCACACACATACACCCATACATTTGCGCGC 652
                      *  **  ****    **          *      * * ****     *  *  ** * * 

consensus_7418#1      GTATT------GTAAACGGAAAACGGTGATG--------TGCTAGGAACTTGTATGACCA 522
consensus_7418#2      GTATT------GTAAACGGAAAACGGTGATTGT------TGCTAGGAACTTGTATGANCA 495
consensus_7418#0      TTATACGAGAAGAAAGCAGGAAACGGCGGCGCAAGATGAAGCTGAAATTTTGTTGAAGGT 712
                       ***       * ** * * ****** *            ***   *  ****   *   

consensus_7418#1      CACGGATAATATTACTAGAGTGAGAAA--------------------------------- 549
consensus_7418#2      GCACGATAATATTACTAGAGTGAGAAAGAGAAACGGACAAACTTTTAAGGGAA------- 548
consensus_7418#0      TTTTTTTTGTCAGATTCAAGTGAGGAAAAGGGTCANGTTACGGTTTTCAAAATGACCGGT 772
                            *  *   * *  ****** **                                 

consensus_7418#1      ------------------------------------------------------------
consensus_7418#2      ------------------------------------------------------------
consensus_7418#0      GTGGGAAAGGGTGCGAAATGCGATAGATACTAACCATAAGAAATGAAAGTAATTAACATC 832
                                                                                  

consensus_7418#1      ------------------------------------------------------------
consensus_7418#2      ------------------------------------------------------------
consensus_7418#0      TTACTCAGTACTGCGAGAAGCATAGCTCATCACGGCAAGTTGCACATGGTGTTTAGAGCA 892
                                                                                  

consensus_7418#1      ----
consensus_7418#2      ----
consensus_7418#0      ATAT 896
                          




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)