These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7418#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 896 fasta sequence [GAATCGCCCGAGGACAATTCGCCAGAATCACTAGCACGCACGGGGGAGAGAAATGTTTTCTTTTGTACTAAATTCTCCTCCCTAACGAACTGCATCCTGCAACAATGCAAATGTGAGAAAGCAGCGACTCTATAAACAAAGGAACCAGATAAC--AAAAAAAATCTAAATTTAAAGATACTTTAACTGGGGGTGTATTGTAAACGGAAAACGGTGATTGTTGCTAGGAACTTGTATGACCACACGGATAATATTACTAGAGTGAGAAAGAGAAACGGACAAACTTTTAGGGAAAATGAATGCAAAACTTTTACTACACCAGTGAACAATAGCGGTGGCAGTAGCGGTGTCGTTGTGCTGGCAAGGAA-GGGAAGAACAATTAATCGAACCAACCAATTTGCTGCTTACTACTACTAACGATGGAACAGTGTTGGAAGGGATACAATGAACGAGCAAGGCAAAAGCCGCCGGTGTAGTAATGCAGGATGGTTGCGTTTAGATTTGCTAAATTATAACTATAACTACTATACTAATGATATACTTTATTGTAATTTATGAATACAGACACAGTTAAGCAGCTGTTGGAAAATGGTAAAAAAATGAGATCGGGAACATTCAGCTCATGGCACACACATACACCCATACATTTGCGCGCTTATACGAGAAGAAAGCAGGAAACGGCGGCGCAAGATGAAGCTGAAATTTTGTTGAAGGTTTTTTTTTGTCAGATTCAAGTGAGGAAAAGGGTCANGTTACGGTTTTCAAAATGACCGGTGTGGGAAAGGGTGCGAAATGCGATAGATACTAACCATAAGAAATGAAAGTAATTAACATCTTACTCAGTACTGCGAGAAGCATAGCTCATCACGGCAAGTTGCACATGGTGTTTAGAGCAATAT] [+] EMBL AL932461 [GAATCGCCCGAGGACAATTCGCCAGAATCACTAGCACGCACGGGGGAGAGAAATGTTTTCTTTTGTACTAAATTCTCCTCCCTAACGAACTGCATCCTGCAACAATGCAAATGTGAGAAAGCAGCGACTCTATAAACAAAGGAACCAGATAAC AAAAAAAATCTAAATTTAAAGATACTTTAACTGGGGGTGTATTGTAAACGGAAAACGGTGATTGTTGCTAGGAACTTGTATGACCACACGGATAATATTACTAGAGTGAGAAAGAGAAACGGACAAACTTTTAGGGAAAATGAATGCAAAACTTTTACTACACCAGTGAACAATAGCNGTGGCAGTAGCGGTGTCGTTGTGCTGGCAAGGAACGGGAAGAACAATTAATCGAACCAACCAATTTGCTGCTTACTACTACTAACGATGGAACAGTGTTGGAAGGG ] [+] EMBL BX615416 [ AATGTTTTCTTTTGTACTAAATTCTCCTCCCTAACGAACTGCATCCTGCAACAATGCAAATGTGAGAAAGCAGCGACTCTATAAACAAAGGAACCAGATAACAAAAAAAAAATCTAAATTTAAAGATACTTTAACTGGGGGTGTATTGTAAACGGAAAACGGTGATTGTTGCTAGGAACTTGTATGACCACACGGATAATATTACTAGAGTGAGAAAGAGAAACGGACAAACTTTTAGGGAAAATGAATGCAAAACTTTTACTACACCAGTGAACAATAGCGGTGGCAGTAGCGGTGTCGTTGTGCTGGCAAGGAA GGGAAGAACAATTAATCGAACCAACCAATTTGCTGCTTACTACTACTAACGATGGAACAGTGTTGGAAGGGATACAATGAACGAGCA ] [+] EMBL BX621515 [ AACAATGCAAATGTGAGAAAGCAGCGACTCTATAAACAAAGGAACCAGATAAC AAAAAAAATCTAAATTTAAAGATACTTTAACTGGGGGTGTATTGTAAACGGAAAACGGTGATTGTTGCTAGGAACTTGTATGACCACACGGATAATATTACTAGAGTGAGAAAGAGAAACGGACAAACTTTTAGGGAAAATGAATGCAAAACTTTTACTACACCAGTGAACAATAGCGGTGGCAGTAGCGGTGTCGTTGTGCTGGCAAGGAA GGGAAGAACAATTAATCGAACCAACCAATTTGCTGCTTACTACTACTAACGATGGAACAGTGTTGGAAGGGATACAATGAACGAGCAAGGCAAAAGCCGCCGGTGTAGTAATGCAGGATGGTTGCGTTTAGATTTGCTAAATTATAACTATAACTACTATACTAATGATATACTTTATTGTAATTTATGAATACAGACACAGTTAAGCAGCTGTTGGAAAATGGTAAAAAAATGAGATCGGGAACATTCAGCTCATGGCACACACATACACCCATACATTTGCGCGCTTATACGAGAAGAAAGCAGGAAACGGCGGCGCAAGATGAAGCTGAAATTTTGTTGAAGGTTTTTTTTTGTCAGATTCAAGTGAGGAAAAGGGTCANGTTACGGTTTTCAAAATGACCGGTGTGGGAAAGGGTGCGAAATGCGATAGATACTAACCATAAGAAATGAAAGTAATTAACATCTTACTCAGTACTGCGAGAAGCATAGCTCATCACGGCAAGTTGCACATGGTGTTTAGAGCAATAT] [+] EMBL BX613228 [ GTATTGTAAACGGAAAACGGTGATTGTTGCTAGGAACTTGTATGACCACACGGATAATATTACTAGAGTGAGAAAGAGAAACGGACAAACTTTTAGGGAAAATGAATGCAAAACTTTTACTACACCAGTGAACAATAGCGGGGGCAGTAGCGGTGTCGTTGTGCTGGCAAGGAA GGGAAGAACAATTAATCGAACCAACCAATTTGCTGCTTACTACTACTAACGATGGAACAGTGTTGGAAGGGATACAATGAACGAGCAAGG ] [+] EMBL BX604495 [ GTGATTGTTGCTAGGAACTTGTATGACCACACGGATAATATTACTAGAGTGAGAAAGAGAAACGGACAAACTTTTAGGGAAAATGAATGCAAAACTTTTACTACACCAGTGAACAATAGCGGTGGCAGTAGCGGTGTCGTTGTGCTGGCAAGGAA GGGAAGAACAATTAATCGAACCAACCAATTTGCTGCTTACTACTACTAACGATGGAACAGTGTTGGAAGGGATACAATGAACGAGCAAGGCAAAAGCCGCCGGTGTAGTAATGCAGGATGGTTGCGTTTAGATTTGCTAAATTATAACTATAACTACTATACTAATGATATACTTTATTGTAATTTATGAATACAGACACAGTTAAGCAGCTGTTGGAAAATGGTAAAAAAATGAGATCGGGAACATTCAGCTCATGGCACACACATACACCCATACATTTGCGCGCTTATACGAGAAGAAAGCAGGAAACGGCGGCGCAAGATGAAGCTGAAATTTTGTTGA ] consensusID : consensus_7418#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence [GGGCAGAATTNGGCGCCCGAGGTGTNAAACTGTAAGCTAAAANCAACGATGTAGATTCATTAAAACTGGCAACAAACAACAACAAAAAAACACACACAAAACCGAGAAGGAAACTAACAGCAATGCAAAACAAACACAAGTAATCCACTAGGCGTAATATTTTACGTGTATCACAATCCCACTAGAAACTCCCGCTAAAAGTGATGAGATTTTCTAAACGCTAAATACTGTCGATGCATCAGCCAGCGATCATATATCAACAAATCAGAGACAAACAGACTACAAACATCTTACAAATTCGCCAGAATCACTAGCACGCACGGGGGAGAGAAATGTTTTCTTTTGTACTAAATTCTCCTCCCTAACGAACTGCATTCCTGCAACCAATGGCAAATGGTGAGAAAGCAGCGACTCCTATAAACAAAGGAACCAGATAACAAAAAAAATCTAAATTTAAAGATACTTTAACTGGGGGTGTATTGTAAACGGAAAACGGTGATGTGCTAGGAACTTGTATGACCACACGGATAATATTACTAGAGTGAGAAA] [+] EMBL AL931449 [GGGCAGAATTNGGCGCCCGAGGTGTNAAACTGTAAGCTAAAANCAACGATGTAGATTCATTAAAACTGGCAACAAACAACAACAAAAAAACACACACAAAACCGAGAAGGAAACTAACAGCAATGCAAAACAAACACAAGTAATCCACTAGGCGTAATATTTTACGTGTATCACAATCCCACTAGAAACTCCCGCTAAAAGTGATGAGATTTTCTAAACGCTAAATACTGTCGATGCATCAGCCAGCGATCATATATCAACAAATCAGAGACAAACAGACTACAAACATCTTACAAATTCGCCAGAATCACTAGCACGCACGGGGGAGAGAAATGTTTTCTTTTGTACTAAATTCTCCTCCCTAACGAACTGCATTCCTGCAACCAATGGCAAATGGTGAGAAAGCAGCGACTCCTATAAACAAAGGAACCAGATAACAAAAAAAATCTAAATTTAAAGATACTTTAACTGGGGGTGTATTGTAAACGGAAAACGGTGATGTGCTAGGAACTTGTATGACCACACGGATAATATTACTAGAGTGAGAAA] consensusID : consensus_7418#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 548 fasta sequence [CAGAATTCGCCACGAGGTTAGATTCATTAAAACTGCAACAACANACAACAAAAAAACACACACAAAAAGAGAAGTGAAACTAACAGCAATGCAAAACAAACACAAGTAATCCACTAGTGCGTAATATTTTTACGTGTATCACAATCCCACTAGAAACTCCCGCTAAAAGTGATGAGATTTTTTAAACGCTAAATACTGTCGATGCATCAGCCAGCGATCATATATCAACAAATCAGAGACAAACAGACTACAAACATCTTACAAATTCGCCAGAATCACTAGCACGCACGGGGGAGAGAAATGTTTTCTTTTTGTACTAAATTCTCCTCCCTAACGAACTGCATCCTGCAACGAATGCAAATGTGAGAAAGCAGGCGACGTCTATAGAACAAAGGAACCAGATAACAAAAGAACAATCTAAGATTTAAAGATACTTTAACTGGGGGTGTATTGTAAACGGAAAACGGTGATTGTTGCTAGGAACTTGTATGANCAGCACGATAATATTACTAGAGTGAGAAAGAGAAACGGACAAACTTTTAAGGGAA] [+] EMBL BX467368 [CAGAATTCGCCACGAGGTTAGATTCATTAAAACTGCAACAACANACAACAAAAAAACACACACAAAAAGAGAAGTGAAACTAACAGCAATGCAAAACAAACACAAGTAATCCACTAGTGCGTAATATTTTTACGTGTATCACAATCCCACTAGAAACTCCCGCTAAAAGTGATGAGATTTTTTAAACGCTAAATACTGTCGATGCATCAGCCAGCGATCATATATCAACAAATCAGAGACAAACAGACTACAAACATCTTACAAATTCGCCAGAATCACTAGCACGCACGGGGGAGAGAAATGTTTTCTTTTTGTACTAAATTCTCCTCCCTAACGAACTGCATCCTGCAACGAATGCAAATGTGAGAAAGCAGGCGACGTCTATAGAACAAAGGAACCAGATAACAAAAGAACAATCTAAGATTTAAAGATACTTTAACTGGGGGTGTATTGTAAACGGAAAACGGTGATTGTTGCTAGGAACTTGTATGANCAGCACGATAATATTACTAGAGTGAGAAAGAGAAACGGACAAACTTTTAAGGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7418#1 ------------------------------------------------------------ consensus_7418#2 ------------------------------------------------------------ consensus_7418#0 GAATCGCCCGAGGACAATTCGCCAGAATCACTAGCACGCACGGGGGAGAGAAATGTTTTC 60 consensus_7418#1 ------------------------------------------------------------ consensus_7418#2 ------------------------------------------------------------ consensus_7418#0 TTTTGTACTAAATTCTCCTCCCTAACGAACTGCATCCTGCAACAATGCAAATGTGAGAAA 120 consensus_7418#1 ------------GGGCAGAATTNGGCGCCCGAGGTGTNAAACTGTAAGCTAAAANCA--A 46 consensus_7418#2 ------------------------------------------------CAGAATTCGCCA 12 consensus_7418#0 GCAGCGACTCTATAAACAAAGGAACCAGATAACAAAAAAAATCTAAATTTAAAGATACTT 180 ** consensus_7418#1 CGATGT-AGATTCATTA-AAACTGGCAACAAACAACAACAA-AAAAACACACACAAAACC 103 consensus_7418#2 CGAGGTTAGATTCATTA-AAACTG-CAACAACANACAACAA-AAAAACACACACAAAAAG 69 consensus_7418#0 TAACTGGGGGTGTATTGTAAACGGAAAACGGTGATTGTTGCTAGGAACTTGTATGACCAC 240 * * * *** **** * *** * *** * * consensus_7418#1 GAGAAGGAAACTAACAGCAATGCAAAACAAACACAAGTAATCCACTAG-GCGTAATATTT 162 consensus_7418#2 AGAAGTGAAACTAACAGCAATGCAAAACAAACACAAGTAATCCACTAGTGCGTAATATTT 129 consensus_7418#0 ACGGATAATATTACTAG-AGTGAGAAAGAGAAACGGACAAACTTTTAG-GGAAAATGAAT 298 * * ** ** * ** *** * * ** ** * *** * *** * consensus_7418#1 T-ACGTGTATCACAATCCCACTAGAAACTCCCGCTAAAAGTGATGAGATTTTCT------ 215 consensus_7418#2 TTACGTGTATCACAATCCCACTAGAAACTCCCGCTAAAAGTGATGAGATTTTTT------ 183 consensus_7418#0 GCAAAACTTTTACTACACCAGTGAACAATAGCGGTGGCAGTAGCGGTGTCGTTGTGCTGG 358 * * * ** * *** * * * * ** * *** * * * consensus_7418#1 ---AAACGCTAAATACTGTCGAT-GCATCAGCCAGC-----GATCATA-----TATCAAC 261 consensus_7418#2 ---AAACGCTAAATACTGTCGAT-GCATCAGCCAGC-----GATCATA-----TATCAAC 229 consensus_7418#0 CAAGGAAGGGAAGAACAATTAATCGAACCAACCAATTTGCTGCTTACTACTACTAACGAT 418 * * ** ** * ** * * ** *** * * * ** * * consensus_7418#1 AAATCAGAGACAAACAGACTACAAACATCTTACAAATTCGCCAGAATCACTAGCACGC-- 319 consensus_7418#2 AAATCAGAGACAAACAGACTACAAACATCTTACAAATTCGCCAGAATCACTAGCACGC-- 287 consensus_7418#0 GGAACAGTGTTGGAAGGGATACAATGAACGAGCAAG---GCAAAAGCCGCCGGTGTAGTA 475 * *** * * * ***** * * *** ** * * * * * consensus_7418#1 ACGGGGGAGAGAAATGTTTTCTTTT-GTA--------CTAAATTCTCCTCCCTAACGAAC 370 consensus_7418#2 ACGGGGGAGAGAAATGTTTTCTTTTTGTA--------CTAAATTCTCCTCCCTAACGAAC 339 consensus_7418#0 ATGCAGGATGGTTGCGTTTAGATTTGCTAAATTATAACTATAACTACTATACTAATGATA 535 * * *** * **** *** ** *** * * **** ** consensus_7418#1 TGCATTCCTGCAACCAATGGCAAATGGTGAGAAAGC-AG-CGACTCCTATA-AAC---AA 424 consensus_7418#2 TGCAT-CCTGCAACGAATG-CAAATG-TGAGAAAGC-AGGCGACGTCTATAGAAC---AA 392 consensus_7418#0 TACTTTATTGTAATTTATG---AATACAGACACAGTTAAGCAGCTGTTGGAAAATGGTAA 592 * * * ** ** *** *** ** * ** * * * * * ** ** consensus_7418#1 AGGAACCAGATAACAAAAAAA--ATCTAA-ATTTAAAGATAC-----TTTAACTGGGGGT 476 consensus_7418#2 AGGAACCAGATAACAAAAGAACAATCTAAGATTTAAAGATAC-----TTTAACTGGGGGT 447 consensus_7418#0 AAAAATGAGATCGGGAACATTCAGCTCATGGCACACACATACACCCATACATTTGCGCGC 652 * ** **** ** * * * **** * * ** * * consensus_7418#1 GTATT------GTAAACGGAAAACGGTGATG--------TGCTAGGAACTTGTATGACCA 522 consensus_7418#2 GTATT------GTAAACGGAAAACGGTGATTGT------TGCTAGGAACTTGTATGANCA 495 consensus_7418#0 TTATACGAGAAGAAAGCAGGAAACGGCGGCGCAAGATGAAGCTGAAATTTTGTTGAAGGT 712 *** * ** * * ****** * *** * **** * consensus_7418#1 CACGGATAATATTACTAGAGTGAGAAA--------------------------------- 549 consensus_7418#2 GCACGATAATATTACTAGAGTGAGAAAGAGAAACGGACAAACTTTTAAGGGAA------- 548 consensus_7418#0 TTTTTTTTGTCAGATTCAAGTGAGGAAAAGGGTCANGTTACGGTTTTCAAAATGACCGGT 772 * * * * ****** ** consensus_7418#1 ------------------------------------------------------------ consensus_7418#2 ------------------------------------------------------------ consensus_7418#0 GTGGGAAAGGGTGCGAAATGCGATAGATACTAACCATAAGAAATGAAAGTAATTAACATC 832 consensus_7418#1 ------------------------------------------------------------ consensus_7418#2 ------------------------------------------------------------ consensus_7418#0 TTACTCAGTACTGCGAGAAGCATAGCTCATCACGGCAAGTTGCACATGGTGTTTAGAGCA 892 consensus_7418#1 ---- consensus_7418#2 ---- consensus_7418#0 ATAT 896 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||