These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7428#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 810 fasta sequence [CTCGGTGGCACGATACGCGTGCAGGGTGTGTACGAGGATCAGACGATACAAATTACGCCCGGTACCTCGTCGCACACGCGAATAACGCTCACCGGGAAGGGACTGAAGCGGGTGAATAGTTACGGTAGCGGAAATCATTATGTACATTTGAAGATTCAAATTCCAACCAAGCTTACACCGAAGCAAAAAGCCCTTATACAGGCTTACGCTGAACTGGAGGACGATACACCCGGACAGATAATGGGTGTAACGTTTAAAACCGACGGTAAGTCCTCCTCTTCGGGCTCAAGCTCTAGCAGCGACTCCTTCACATCCTCCTCCTCCTCCTCCTCCTCTTCCACCTCATCCTCCTCCAATTCATCCTCCACCTGGTCCTCATCGAACGTTTCCGACAAGCACACGCAAGGGGCCCGCGATCAAGAAGGCTACGACACGTACAAACCGCACGATCCGACCGACACACACGAGTACCGAAAGGAGCGGTTCGATTCTCGATTTTACTACGCGCTCGGCGCATTGCTC-GTGATGGGTTGGTTCGTGTACTACACGCACCAACAGACGAACGCACAGTTCGAA-CGCGACCGGCTGGAAGCACTCGAACGGCAGCGGGTAGCCCGCGGCGGCTACAAGGACGTCA-CGCAACCGTTCGATGAGGCCTAGGCGCCGTGTTCAACACACAGCCCCTACTAACTTCCAACCATCCAAGCAAGCAACGATTGTTAAGTGGTGCTGTGGTGTAGGGAGTATGCGTTTGTTATTGGTGAAATAGGGTCAACAGAAG-ACAGAGTGTTGTTTTGAATTCGAACGAAA] [+] EMBL BX624593 [CTCGGTGGCACGATACGCGTGCAGGGTGTGTACGAGGATCAGACGATACAAATTACGCCCGGTACCTCGTCGCACACGCGAATAACGCTCACCGGGAAGGGACTGAAGCGGGTGAATAGTTACGGTAGCGGAAATCATTATGTACATTTGAAGATTCAAATTCCAACCAAGCTTACACCGAAGCAAAAAGCCCTTATACAGGCTTACGCTGAACTGGAGGACGATACACCCGGACAGATAATGGGTGTAACGTTTAAAACCGACGGTAAGTCCTCCTCTTCGGGCTCAAGCTCTAGCAGCGACTCCTTCACATCCTCCTCCTCCTCCTCCTCCTCTTCCACCTCATCCTCCTCCAATTCATCCTCCACCTGGTCCTCATCGAACGTTTCCGACAAGCACACGCAAGGGGCCCGCGATCAAGAAGGCTACGACACGTACAAACCGCACGATCCGACCGACACACACGAGTACCGAAAGGAGCGGTTCGATTCTCGATTTTACTACGCGCTCGGCGCATTGCTC GTGATGGGTTGGTTCGTGTACTACACGCACCAACAGACGAACGCACAGTTCGAA CGCGACCGGCTGGAAGCACTCGAACGGCAGCGGGTAGCCCGCGGCGGCTACAAGGACGTCA CGCAACCGTTCGATGAGGCCTAGGCGCCGTGTTCAACACACAGCCCCTACTAACTTCCAACCATCCAAGCAAGCAACGATTGTTAAGTGGTGCTGTGGTGTANGGAGTATGCGTTTGTTATTGGTGAAATAGGGTCAACAGAAG ACAGAGTGTTGTTTTGAATTCGAACGAAA] [-] EMBL CNS08P56 [ tATACGCGTGCAGGGTGTGTACGAGGATCAGACGATACAAATTACGCCCGGTACCTCGTCGCACACGCGAATAACGCTCACCGGGAAGGGACTGAAGCGGGTGAATAGTTACGGTAGCGGAAATCATTATGTACATTTGAAGATTCAAATTCCAACCAAGCTTACACCGAAGCAAAAAGCCCTTATACAGG TTACGCTGAACTGGAGGACGATACACCCGGACAGATAATGGGTGTAACGTTTAAAACCGACGGTAAGTCCTCCTCTTCGGGCTCAAGCTCTAGCAGCGACTCCTTCACATCCTCCTCCTCCTCCTCCTCCTCTTCCACCTCATCCTCCTCCAATTCATCCTCCACCTGGTCCTCATCGAACGTTTCCGACAAGCACACGCAAGGGGCCCGCGATCAAGAAGGCTACGACACGTACAAACCGCACGATCCGACCGACACACACGAGTACCGAAAGGAGCGGTTCGATTCTCGATTTTACTACGCGCTCGGCGCATTGCTC GTGATGGGTTGGTTCGTGTACTACACGCACCAACAGACGAACGCACAGTTCGAA CGCGACCGGCTGGAAGCACTCGAACGGCAGCGGGTAGCCCGCGGCGGCTACAAGGACGTCA CGCAACCGTTCGATGAGGCCTA ] [-] EMBL CNS08V8V [ GGAGGACGATACACCCGGACAGATAATGGGTGTAACGTTTAAAACCGACGGTAAGTCCTCCTCTTCGGGCTCAAGCTCTAGCAGCGACTCCTTCACATCCTCCTCCTCCTCCTCCTCCTCTTCCACCTCATCCTCCTCCAATTCATCCTCCACCTGGTCCTCATCGAACGTTTCCGACAAGCACACGCAAGGGGCCCGCGATCAAGAAGGCTACGACACGTACAAACCGCACGATCCGACCGACACACACGAGTACCGAAAGGAGCGGTTCGATTCTCGATTTTACTACGCGCTCGGCGCATTGCTCTGTGATGGGTTGGTTCGTGTACTACACGCACCAACAGACGAACGCACAGTTCGAACCGCGACCGGCTGGAAGCACTCGAACGGCAGCGGGTAGCCCGCGGCGGCTACAAGGACGTCACCGCAACCGTTCGATGAGGCCTAGGCGCCGTGTTCAACACACAGCCCCTACTAACTTCCAACCATCCAAGCAAGCAACGATTGTTAAGTGGTGCTGTGGTGTAGGGAGTATGCGTTTGTTATTGGTGAAATAGGGTCAACAGAAGAACAGA ] [+] EMBL BX615278 [ CTCTTCGGGCTCAAGCTCTAGCAGCGACTCCTTCACATCCTCCTCCTCCTCCTCCTCCTCTTCCACCTCATCCTCCTCCAATTCATCCTCCACCTGGTCCTCATCGAACGTTTCCGACAAGCACACGCAAGGGGCCCGCGATCAAGAAGGCTACGACACTTACAAACCGCACGATCCGACCGACACACACGAGTACCGAAAGGAGCGGTTCGATTCTCGATTTTACTACGCGCTCGGCGCATTGCTC GTGATGGGTTGGTTCGTGTACTACACGCACCAACAGACGAACGCACAGTTCGAA CGCGACCGGCTGTAAGCACTCGAACGGCAGCGGGTAGCCCGCGGCGGCTACAAGGACGTCA CGCAACCGTTCGATGAGGCCTAGGCGCCGTGTTCAACACACAGCCCCTACTAACTTCCAACCATCCAAGCAAGCAACGATTGTTAAGTGGTGCTGTGGTGTAGGGAGTATGCGTTTGTTATTGGTGAAATAGGGTCAACAGAAGAACAGAGTGTTGTTTTGA ] [+] EMBL BX618696 [ CTCTTCGGGCTCAAGCTCTAGCAGCGACTCCTTCACATCCTCCTCCTCCTCCTCCTCCTCTTCCACCTCATCCTCCTCCAATTCATCCTCCACCTGGTCCTCATCGAACGTTTCCGACAAGCACACGCAAGGGGCCCGCGATCAAGAAGGCTACGACACGTACAAACCGCACGATCCGACCGACACACACGAGTACCGAAAGGAGCGGTTCGATTCTCGATTTTACTACGCGCTCGGCGCATTGCTC GTGATGGGTTGGTTCGTGTACTACACGCACCAACAGACGAACGCACAGTTCGAA CGCGACCGGCTGGAAGCACTCGAACGGCAGCGGGTAGCCCGCGGCGGCTACAAGGACGTCA CGCAACCGTTCGATGAGGCCTAGGCGCCGTGTTCAACACACAGCCCCct ] consensusID : consensus_7428#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 533 fasta sequence [CCGCTATTTCCGCCGGGACGGTGCGGACGTGCACACGGACGCGAATATTTCCCTCTCACAGGCAATACTCGGTGGCACGATACGCGTGCAGGGTGTGTACGAGGATCAGACGATACAAATTACGCCCGGTACCTCGTCGCACACGCGAATAACGCTCACCGGGAAGGGACTGAAGCGGGTGAATAGTTACGGTAGCGGAAATCATTATGTACATTTGAAGATTCAAATTCCAACCAAGCTTACACCGAAGCAAAAAGCCCTTATACAGGCTTACGCTGAACTGGAGGACGATACACCCGGACAGATAATGGGTGTAACGTTTAAAACCGACGGTGGAAAAGTGTGCTACGCGGAGCCACAGGAGCTGACGGACATTGTGCGTGAGGCGCTGAAAGATCGTAAGCCCCTTCCTACGTCGAGCGCTGAGGAACCGGCGGCCACGCCAAAGACGAAAGAAGAGGAGGAAGCGGCCAAGACGCGTAGCAGCAATTAGAGTAGCTTAAAGCGGTAACACACAGTTTAGGGAAAGATAA] [+] EMBL BM602359 [CCGCTATTTCCGCCGGGACGGTGCGGACGTGCACACGGACGCGAATATTTCCCTCTCACAGGCAATACTCGGTGGCACGATACGCGTGCAGGGTGTGTACGAGGATCAGACGATACAAATTACGCCCGGTACCTCGTCGCACACGCGAATAACGCTCACCGGGAAGGGACTGAAGCGGGTGAATAGTTACGGTAGCGGAAATCATTATGTACATTTGAAGATTCAAATTCCAACCAAGCTTACACCGAAGCAAAAAGCCCTTATACAGGCTTACGCTGAACTGGAGGACGATACACCCGGACAGATAATGGGTGTAACGTTTAAAACCGACGGTGGAAAAGTGTGCTACGCGGAGCCACAGGAGCTGACGGACATTGTGCGTGAGGCGCTGAAAGATCGTAAGCCCCTTCCTACGTCGAGCGCTGAGGAACCGGCGGCCACGCCAAAGACGAAAGAAGAGGAGGAAGCGGCCAAGACGCGTAGCAGCAATTAGAGTAGCTTAAAGCGGTAACACACAGTTTAGGGAAAGATAA] [+] EMBL BX615498 [ GGACGTGCACACGGACGCGAATATTTCCCTCTCACAGGCAATACTCGGTGGCACGATACGCGTGCAGGGTGTGTACGAGGATCAGACGATACAAATTACGCCCGGTACCTCGTCGCACACGCGAATAACGCTCACCGGGAAGGGACTGAAGCGGGTGAATAGTTACGGTAGCGGAAATCATTATGTACATTTGAAGATTCAAATTCCAACCAAGCTTACACCGAAGCAAAAAGCCCTTATACAGGCTTACGCTGAACTGGAGGACGATACACCCGGACAGATAATGGGTGTAACGTTTAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7428#0 ------------------------------------------------------------ consensus_7428#1 CCGCTATTTCCGCCGGGACGGTGCGGACGTGCACACGGACGCGAATATTTCCCTCTCACA 60 consensus_7428#0 -------CTCGGTGGCACGATACGCGTGCAGGGTGTGTACGAGGATCAGACGATACAAAT 53 consensus_7428#1 GGCAATACTCGGTGGCACGATACGCGTGCAGGGTGTGTACGAGGATCAGACGATACAAAT 120 ***************************************************** consensus_7428#0 TACGCCCGGTACCTCGTCGCACACGCGAATAACGCTCACCGGGAAGGGACTGAAGCGGGT 113 consensus_7428#1 TACGCCCGGTACCTCGTCGCACACGCGAATAACGCTCACCGGGAAGGGACTGAAGCGGGT 180 ************************************************************ consensus_7428#0 GAATAGTTACGGTAGCGGAAATCATTATGTACATTTGAAGATTCAAATTCCAACCAAGCT 173 consensus_7428#1 GAATAGTTACGGTAGCGGAAATCATTATGTACATTTGAAGATTCAAATTCCAACCAAGCT 240 ************************************************************ consensus_7428#0 TACACCGAAGCAAAAAGCCCTTATACAGGCTTACGCTGAACTGGAGGACGATACACCCGG 233 consensus_7428#1 TACACCGAAGCAAAAAGCCCTTATACAGGCTTACGCTGAACTGGAGGACGATACACCCGG 300 ************************************************************ consensus_7428#0 ACAGATAATGGGTGTAACGTTTAAAACCGACGGTA-AGTCCTCCTCTTCGGGCTCAAGCT 292 consensus_7428#1 ACAGATAATGGGTGTAACGTTTAAAACCGACGGTGGAAAAGTGTGCTACGCG---GAGCC 357 ********************************** * * ** ** * *** consensus_7428#0 CTAGCAGCGACTCCTTCACATCCTCCTCCTCCTCCTCCTCCTCTTCCACCTCATCCTCCT 352 consensus_7428#1 ---ACAGGAGCTGACGGACATTGT-----GCGTGAGGCGCTGAAAGATCGTAAGCCCCTT 409 *** ** **** * * * * * * * * ** * * consensus_7428#0 CCAATTCATCCTCCACCTGGTCCTCATCGAACGTTTCCGACAAGCACACGCAAGGGGCCC 412 consensus_7428#1 CC--TACGTCGAGCGCTGAGGAACCGGCGGCCACG-CCAAAGACGAAAGAAGAGGAGGAA 466 ** * * ** * * * * ** * ** * * * * *** * consensus_7428#0 GCGATCAAGAAGGCTACGACACGTACAAACCGCACGATCCGACCGACACACACGAGTACC 472 consensus_7428#1 GCGGCCAAGACGCGTAGCAGCAATTAGAGTAGCTTAAAGCGGT-AACACACA-GTTTAGG 524 *** ***** * ** * * * ** * ** ******* * ** consensus_7428#0 GAAAGGAGCGGTTCGATTCTCGATTTTACTACGCGCTCGGCGCATTGCTCGTGATGGGTT 532 consensus_7428#1 GAAAGATAA--------------------------------------------------- 533 ***** consensus_7428#0 GGTTCGTGTACTACACGCACCAACAGACGAACGCACAGTTCGAACGCGACCGGCTGGAAG 592 consensus_7428#1 ------------------------------------------------------------ consensus_7428#0 CACTCGAACGGCAGCGGGTAGCCCGCGGCGGCTACAAGGACGTCACGCAACCGTTCGATG 652 consensus_7428#1 ------------------------------------------------------------ consensus_7428#0 AGGCCTAGGCGCCGTGTTCAACACACAGCCCCTACTAACTTCCAACCATCCAAGCAAGCA 712 consensus_7428#1 ------------------------------------------------------------ consensus_7428#0 ACGATTGTTAAGTGGTGCTGTGGTGTAGGGAGTATGCGTTTGTTATTGGTGAAATAGGGT 772 consensus_7428#1 ------------------------------------------------------------ consensus_7428#0 CAACAGAAGACAGAGTGTTGTTTTGAATTCGAACGAAA 810 consensus_7428#1 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||