These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7433#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1205 fasta sequence [CCGCCGATCGTTAATCCGACCAACGAAAAAGTGATCTGTGACGTGGCGAATGCATCCAAAGCGGACGTTGACGATGCAGTTCAAGCCGCCGATGAAGCGTTCCGTGGCGTATGGACGTCCGTTTCGGCACGTGAGCGCGGTCAGCTGATGTACCGATTGGCAGAGCTGATGGAGCAGCACCGGGAGGAACTGGCAACGATTGAGTCGATCGATTCGGGTGCAGTTTACACGCTTGCACTGAAAACTCACGTCGGTATGTCGATCGATGCGTGGCGCTACTATGCTGGTTGGGCGGATAAGATCGAAGGTAGCACGATTCCGGTCAGCCCAGCCCGCCCGAATCGTGTGCTAACGTTCACGAAGAAGGAACCGATCGGTGTGTGCGCTTTAATTACACCCTGGAACTACCCACTGATGATGCTCTCGTGGAAGATGGCCGCTTGCATTGCCGCAGGCAACACGGTTGTGATTAAACCAGCCCAGGTGTGTCCCTTGACGGCACTAAAGTTTGCCGAGCTTACAGTAAGAGCCGGCTTTCCACCGGGAGTGATCAATGTCGTCACGGGTACGGGCTCGTTGGCCGGCCAAGCCCTTGCAGACCATCCAGCGGTGCGCAAACTGGGCTTCACCGGATCCACTCCAATCGGGAAACGCATCATGGCTTCGTGCGCCGAATCCAACATCAAAAAGTGCTCCATGGAGCTGGGCGGCAAGTCGCCGCTCGTCATCTTCGCCGACTGCGATCTCGAGAAGGCGGTCCGGCTCGGCATGTCGTCGGTGTTTTTCAACAAGGGTGAAAACTGTATTGCCGCTGGCCGGCTGTTTGTGGAGGACCGCATCCACGATGAGTTTGTGCGGAA-AGTGATCCGCGGCATAAAGACGATGAA---ACTTGGCGATCCACTCGACCGGGCGACGGCACATGGACCGCAGAACCATCGGGCACATCTAGAGAAGCTACAGGAGTACTGTGCTATCGGCGTGAAGGAGGGAGCGAAGCTACTGTACGGTGGCAAGCGGGTGCCCAAAATGG-AGGGACTGTTCTTCGAGCCGACCGTGTTTACCGACGTGGAGGATCACATGTACATTGCGCGCGAAGAATCGTTCGGTCCGATCATGGTGATATCGAAGTTTCACGCGAGTGATTTCGATGCGCTGGTGGCAAGGGCTAACAGTACCGAGTACGGGCTGGCGAGTGGTGTTTTCAC] [+] EMBL BM622967 [CCGCCGATCGTTAATCCGACCAACGAAAAAGTGATCTGTGACGTGGCGAATGCATCCAAAGCGGACGTTGACGATGCAGTTCAAGCCGCCGATGAAGCGTTCCGTGGCGTATGGACGTCCGTTTCGGCACGTGAGCGCGGTCAGCTGATGTACCGATTGGCAGAGCTGATGGAGCAGCACCGGGAGGAACTGGCAACGATTGAGTCGATCGATTCGGGTGCAGTTTACACGCTTGCACTGAAAACTCACGTCGGTATGTCGATCGATGCGTGGCGCTACTATGCTGGTTGGGCGGATAAGATCGAAGGTAGCACGATTCCGGTCAGCCCAGCCCGCCCGAATCGTGTGCTAACGTTCACGAAGAAGGAACCGATCGGTGTGTGCGCTTTAATTACACCCT ] [+] EMBL BX615724 [ GATGAAGCGTTCCGTGGCGTATGGACGTCCGTTTCGGCACGTGAGCGCGGTCAGCTGATGTACCGATTGGCAGAGCTGATGGAGCAGCACCGGGAGGAACTGGCAACGATTGAGTCGATCGATTCGGGTGCAGTTTACACGCTTGCACTGAAAACTCACGTCGGTATGTCGATCGATGCGTGGCGCTACTATGCTGGTTGGGCGGATAAGATCGAAGGTAGCACGATTCCGGTCAGCCCAGCCCGCCCGAATCGTGTGCTAACGTTCACGAAGAAGGAACCGATCGGTGTGTGCGCTTTAATTACACCCTGGAACTACCCACTGATGATGCTCTCGTGGAAGATGGCCGCTTGCATTGCCGCAGGCAACACGGTTGTGATTAAACCAGCCCAGGTGTGTCCCTTGACGGCACTAAAGTTTGCCGAGCTTACAGTAAGAGCCGGCTTTCCACCGGGAGTGATAAATGTCGTCACGGGTACGGGCTCGTTGGCCGGCCAAGCCCTTGCAGACCATCCAGCGGTGCGCAAACTGGGCTTCACCGGATCCACTCCAATCGGGAAACGCATCATGGCTTCGTGCGCCGAATCCAACATCAAAAAGTGCTCCATGGAGCTGGGCGGCAAGTCGCCGCTCGTCATCTTCGCCGACTGCGATCTCGAGAAGGCGGTCCGGCTCGGCATGTCGTCGGTGTTTTTCAACAAGGGTGAAAACTGTATTGCCGCTGGCCGGCTGTTTGTGGAGGACCGCATCCACGATGAGTTTGTGCGGAA AGTGATCCGCGGCATAAAGA ] [+] EMBL BX607117 [ GAGTCGATCTATTCGGGTGCAGTTTACACGCTTGCACTGAAAACTCACGTCGGTATGTCGATCGATGCGTGGCGCTACTATGCTGGTTGGGCGGATAAGATCGAAGGTAGCACGATTCCGGTCAGCCCAGCCCGCCCGAATCGTGTGCTAACGTTCACGAAGAAGGAACCGATCGGTGTGTGCGCTTTAATTACACCCTGGAATTACCCACTGATGATGCTCTCGTGGAAGATGGCCGCTTGCATTGCCGCAGGCAACACGGTTGTGATTAAACCGGCTCAAGTATGTCCCTTGACGGCACTAAAGTTTGCCGAGCTTACAGTAAGAGCCGGCTTTCCACCGGGAGTGATCAATGTCGTCACCGGTAC ] [+] EMBL BX605245 [ AGTGATCAAGGTCGTCACGGGTACGGGCTCGTTGGGCGGCCAAGCCCTTGCAGAACATCCAGCGGTGCGCAAACGGGGCTTCACCGGGTCCACTCCAATCGGGAAACG ] [+] EMBL AL693530 [ CATCATGGCATCGTGCGCTGAATCCAACATCAAAAAGTGCTCCATGGAGCTGGGCGGCAAGTCGCCGCTCGTCATCTTCGCCGACTGCGATCTCGAGAAGGCGGTCCGGCTCGGCATGTCGTCGGTGTTTTTCAACAAGGGTGAAAACTGTATTGCCGCTGGCCGGCTG TTGTGGAGGACCGCATCCACGATGAGTTTGTGCGGAANAGTGATCCGCGGCATAAAGACGATGAACACACTTGGCGATCCACTCGACCGGGCGACGGCACATGGACCGCAGAACCATCGGGCACATCTAGAGAAGCTACAGGAGTACTGTGCTATCGGCGTGAAGGAGGGAGCGAAGCTACTGTACGGTGGCAAGCGGGTGCCCAAAATGGCAGGGACTGTTCTTCGAGCCGACCGTGTTTACCGACGTGGAGGATCACATGTACATTGCGCGCGAAGAATCGTTCGGTCCGATCATGGTGATATCGAAGTTTCACGCGAGTGATTTCGATGCGCTGGTGGCAAGGGCTAACAGTACCGAGTACGGGCTGGCGAGTGGTGTTTTCAC] [+] EMBL BX605384 [ AGGGTGAAAACTGTATTGCCGCTGGCCGGCTGTTTGTGGAGGACCGCATCCACGATGAGTTTGTGCGGAA AGTGATCCGCGGCATAAAGACGAAGAA AATTGGCGATCCACTCGACCGGGCGACGGCACATGGACCGCAGAACCATCGGGTACATCTAGAGAAGCTACAGGAGTACTGTGCTATCGGCGTGAAGGAGGGAGCGAAGCTGCTGTACGGGGGCAAGCGGGGGCCCAAAATGG AGGGACTGTTCTTCGAGCCGACCGTGTTTAC ] consensusID : consensus_7433#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 328 fasta sequence [GCCAGAATCGCCAGAGGGTGTAGTTGGCCGGCCAAGCCCTGTCAGATATCCAGCCGTGCGCAAACTGGGCTTCACCGGGTCACTCCAATCGGGAAACGCATCATGGCATCGTGCGCCGAATCCAACATCAAAAAGTGCTCAATGGAGCTGGGCGGCAAGTCGCCGCTCGTCATCTTCGCCGACTGCGATCTCGAGAAGGCGGTCCGGCTCGGCATGTCGTCGCGCTGTNTTTCAACAAGGGTGAAAACTGTATTGCCGCTGGCCGGCTGTTTGTGGAGGACCGATCCAACGATTGAGTTTGTGCGGACAAGTGATCCGGCGGGAGTAC] [+] EMBL BX466183 [GCCAGAATCGCCAGAGGGTGTAGTTGGCCGGCCAAGCCCTGTCAGATATCCAGCCGTGCGCAAACTGGGCTTCACCGGGTCACTCCAATCGGGAAACGCATCATGGCATCGTGCGCCGAATCCAACATCAAAAAGTGCTCAATGGAGCTGGGCGGCAAGTCGCCGCTCGTCATCTTCGCCGACTGCGATCTCGAGAAGGCGGTCCGGCTCGGCATGTCGTCGCGCTGTNTTTCAACAAGGGTGAAAACTGTATTGCCGCTGGCCGGCTGTTTGTGGAGGACCGATCCAACGATTGAGTTTGTGCGGACAAGTGATCCGGCGGGAGTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7433#0 CCGCCGATCGTTAATCCGACCAACGAAAAAGTGATCTGTGACGTGGCGAATGCATCCAAA 60 consensus_7433#1 ------------------------------------------------------------ consensus_7433#0 GCGGACGTTGACGATGCAGTTCAAGCCGCCGATGAAGCGTTCCGTGGCGTATGGACGTCC 120 consensus_7433#1 ------------------------------------------------------------ consensus_7433#0 GTTTCGGCACGTGAGCGCGGTCAGCTGATGTACCGATTGGCAGAGCTGATGGAGCAGCAC 180 consensus_7433#1 ------------------------------------------------------------ consensus_7433#0 CGGGAGGAACTGGCAACGATTGAGTCGATCGATTCGGGTGCAGTTTACACGCTTGCACTG 240 consensus_7433#1 ------------------------------------------------------------ consensus_7433#0 AAAACTCACGTCGGTATGTCGATCGATGCGTGGCGCTACTATGCTGGTTGGGCGGATAAG 300 consensus_7433#1 ------------------------------------------------------------ consensus_7433#0 ATCGAAGGTAGCACGATTCCGGTCAGCCCAGCCCGCCCGAATCGTGTGCTAACGTTCACG 360 consensus_7433#1 ------------------------------------------------------------ consensus_7433#0 AAGAAGGAACCGATCGGTGTGTGCGCTTTAATTACACCCTGGAACTACCCACTGATGATG 420 consensus_7433#1 ------------------------------------------------------------ consensus_7433#0 CTCTCGTGGAAGATGGCCGCTTGCATTGCCGCAGGCAACACGGTTGTGATTAAACCAGCC 480 consensus_7433#1 ------------------------------------------------------------ consensus_7433#0 CAGGTGTGTCCCTTGACGGCACTAAAGTTTGCCGAGCTTACAGTAAGAGCCGGCTTTCCA 540 consensus_7433#1 ------------------------------------------------------------ consensus_7433#0 CCGGGAGTGATCAATGTCGTCACGGGTACGGGCTCGTTGGCCGGCCAAGCCCTTGCAGAC 600 consensus_7433#1 ---------GCCAGAATCGCCAGAGG----GTGTAGTTGGCCGGCCAAGCCCTGTCAGAT 47 ** *** ** ** * * ****************** **** consensus_7433#0 CATCCAGCGGTGCGCAAACTGGGCTTCACCGGATCCACTCCAATCGGGAAACGCATCATG 660 consensus_7433#1 -ATCCAGCCGTGCGCAAACTGGGCTTCACCGGGTC-ACTCCAATCGGGAAACGCATCATG 105 ******* *********************** ** ************************ consensus_7433#0 GCTTCGTGCGCCGAATCCAACATCAAAAAGTGCTCCATGGAGCTGGGCGGCAAGTCGCCG 720 consensus_7433#1 GCATCGTGCGCCGAATCCAACATCAAAAAGTGCTCAATGGAGCTGGGCGGCAAGTCGCCG 165 ** ******************************** ************************ consensus_7433#0 CTCGTCATCTTCGCCGACTGCGATCTCGAGAAGGCGGTCCGGCTCGGCATGTCGTCGG-- 778 consensus_7433#1 CTCGTCATCTTCGCCGACTGCGATCTCGAGAAGGCGGTCCGGCTCGGCATGTCGTCGCGC 225 ********************************************************* consensus_7433#0 TGTTTTTCAACAAGGGTGAAAACTGTATTGCCGCTGGCCGGCTGTTTGTGGAGGACCGCA 838 consensus_7433#1 TGTNTTTCAACAAGGGTGAAAACTGTATTGCCGCTGGCCGGCTGTTTGTGGAGGACCGAT 285 *** ****************************************************** consensus_7433#0 TCCACGAT-GAGTTTGTGCGGA-AAGTGATCCGCGGCATAAAGACGATGAAACTTGGCGA 896 consensus_7433#1 CCAACGATTGAGTTTGTGCGGACAAGTGATCCG--GCGGGAGTAC--------------- 328 * ***** ************* ********** ** * ** consensus_7433#0 TCCACTCGACCGGGCGACGGCACATGGACCGCAGAACCATCGGGCACATCTAGAGAAGCT 956 consensus_7433#1 ------------------------------------------------------------ consensus_7433#0 ACAGGAGTACTGTGCTATCGGCGTGAAGGAGGGAGCGAAGCTACTGTACGGTGGCAAGCG 1016 consensus_7433#1 ------------------------------------------------------------ consensus_7433#0 GGTGCCCAAAATGGAGGGACTGTTCTTCGAGCCGACCGTGTTTACCGACGTGGAGGATCA 1076 consensus_7433#1 ------------------------------------------------------------ consensus_7433#0 CATGTACATTGCGCGCGAAGAATCGTTCGGTCCGATCATGGTGATATCGAAGTTTCACGC 1136 consensus_7433#1 ------------------------------------------------------------ consensus_7433#0 GAGTGATTTCGATGCGCTGGTGGCAAGGGCTAACAGTACCGAGTACGGGCTGGCGAGTGG 1196 consensus_7433#1 ------------------------------------------------------------ consensus_7433#0 TGTTTTCAC 1205 consensus_7433#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||