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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7441#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 2186 fasta sequence
[CCGGTGCAACTAAGCTAGACTAAACTAGGATTAAGCTAATAGATATTGCTTTTTTATATGTTCTTTACCCATCAATATATAATGCTAATTCGGTTCGGTACTGTACTGCTCACTCAAATATAGCTGTAAAGTGGTATGTAGGTGTAAAGAAAAATAAAAGGCACACAATGAAATTCGCGATGGGTGAATTACTGTTCTGGTGGAATTAAAATTTGCACACATTTAGCTACACCTTCTTCGTTTATCACTAGATGGCGAAAGTGAAAGTTTATTGTAATCACAATGATTTTTCGATTCAATTGCGACACACATTTTGGCAATACAAACAGAAACCAAAACCAGCAAGGAGTTCAAAAGTTTGCTCATTACAAAACATAAATTAAATGCATAAATGCTGCAAATAGCGATAAGTAAAACAGTAAAAAAACCCTATCTAACAAAAATCATTCAAACACAAAATATAAAACCATGCAAATACATTCACAAACAGCACAACTAGCAGCGAAAAAGAAAGAAAAGACAATTGTAAATGGAAATTGAATTTCAAATTAAGTACTAAATGACAATAATAACATAAAAAGCCGAAATTGGAGCAGAGAAAAAGAGAAAGAGAGCATTATATATATATACAGCATCCCATTGAAAGTGACGCGTTGTTTAATGTGCTGCGAGCAGAGCTCAAACAATAATTAAATGAATCAAAATACAAGCAAACAAAAAAAGAGAAACAAAACTTTACCAATAAGTGTAAATTTAGCAAAGAAAAACTCAAAATAGGCTGGCGAAATGCAATTCACTCAAATTAAAACATACAACATAGGTGCATCAAAATCACCACCCACTCCCGCACCACTATGAATGTAGCACCATACCCACCTATATCTCCGATGAGATGTGTGGGTGGTTGTTAACACTAGTGGATCATTTTATTCTACTATTATTATTACTACTACTATTACTACTACTACTACTAATACTAATAATTCTTGTCGGCAAGGAGCACATTAAAGCGAACCTACATTTACACGCATCATCATTGCATCAACGGCAAACACTGAACTAAGGACAATAATATATTAGCGACAATAATAGTAAGCTAAACTACCATATAGAGCAAATCTTGCTAAAGTAAACGTTGATAGTGTTGTACATGTAATTTTACATCCCGATCGCAAGACTATTGGATCATATGTGGAGTGCAAACAAACATTTGAGCAACACATTGTACTAGTAATGCTATTATTTCCCTGTAGCGGGTGCAAATTGTGCTGAAAGTTGGTTTTTAACTTTAAGAATGTTATGTATTTTAGCCTGGCTTTTTATGGCCGAAGTTATTATTTGTTTACTGTATTACAATGCAAGCACGAAAATGCAAACTTTCATTTCTACTTGACTTGAAAGCGACAGTAAAACCGCAAACGGTACAGCCGTTTCCACCTACCGAACACACAACTAGCTCGGTATGCATTGCGGTGCGTAGCAGATAATGTGACCAATGCAATCTAAAACTTAAAAAAAGCTTGTCAAACCCAATATAAAAATGATCAAATTTTGATTACTTTATGTGTCTCTTTGTGT-AAATAGCCATGTGTC-ATTACATGACAATAACGAGTAAGGTGGTGTAATTAGATGAAACAACAAAACATTAACTAAAGCAAAAAGGAACAGAAAAATCACACAATACTGAAAAGCAGTCATCATTACTCATTCTAAAACGCTGATTCTGACAAACAATATTGATTGAGCAAGGATAAAAAGGTGAAAAAGAAACATCACAATACAGCACCGATAAATGAACAGATCTGCTACACTATCGCGCTCTCGCACTGTGTATGAGTGAAGTGAATTTCAACCGGAATCATAGCTCCATCATATGAAGAAAATCGAGAGCACACTGTGTAATTTCCTTTGACATTCTATTATTTGTTTTTTGGAAACAGTTTCTACATTGTTCGCTACCAGTTTGA-CAATATCGAAGCATAATTTCGAATCGAAGCGGCCATTTGGAAGCCGGTAAATGCGACCGCACACCCGCACGTTACTAGAGAAACGGCGGGAAAATCTTAATCCTAAACAAAAACTGATGATTGTGAGAGACAATAATTCTTTACAACTTTGAAGTACGCGAGCAAGGATATTACATAATAAGCAAGCAAAGCAAAAAGAGCAAACAAGCCAACCAACAA]
[+] EMBL BM646796 [CCGGTGCAACTAAGCTAGACTAAACTAGGATTAAGCTAATAGATATTGCTTTTTTATATGTTCTTTACCCATCAATATATAATGCTAATTCGGTTCGGTACTGTACTGCTCACTCAAATATAGCTGTAAAGTGGTATGTAGGTGTAAAGAAAAATAAAAGGCACACAATGAAATTCGCGATGGGTGAATTACTGTTCTGGTGGAATTAAAATTTGCACACATTTAGCTACACCTTCTTCGTTTATCACTAGATGGCGAAAGTGAAAGTTTATTGTAATCACAATGATTTTTCGATTCAATTGCGACACACATTTTGGCAATACAAACAGAAACCAAAACCAGCAAGGAGTTCAAAAGTTTGCTCATTACAAAACATAAATTAAATGCATAAATGCTGCAAATAGCGATAAGTAAAACAGTAAAAAAACCCTATCTAACAAAAATCATTCAAACACAAAATATAAAACCATGCAAATACATTCACAAACAGCACAACTAGCAGCGAAAAAGAAAGAAAAGACAATTGTAAATGGAAATTG ]
[+] EMBL BM622020 [ ccGCTGTAAAGTGGTATGTAGGTGTAAAGAAAAATAAAAGGCACACAATGAAATTCGCGATGGGTGAATTACTGTTCTGGTGGAATTAAAATTTGCACACATTTAGCTACACCTTCTTCGTTTATCACTAGATGGCGAAAGTGAAAGTTTATTGTAATCACAATGATTTTTCGATTCAATTGCGACACACATTTTGGCAATACAAACAGAAACCAAAACCAGCAAGGAGTTCAAAAGTTTGCTCATTACAAAACATAAATTAAATGCATAAATGCTGCAAATAGCGATAAGTAAAACAGTAAAAAAACCCTATCTAACAAAAATCATTCAAACACAAAATATAAAACCATGCAAATACATTCACAAACAGCACAACTAGCAGCGAAAAAGAAAGAAAAGACAATTGTAAATGGAAATTGAATTTCAAATTAAGTACTAAATGACAATAATAACATAAAAAGCCGAAATTGGAGCAGAGAAAAAGAGAAAGAGAGCATTATATATATATACAGCATCCCATTGAAAGTGACGCGTTGTTTAATGTGCTGCGAGCAGAGCTCAAACAATAATTAAATGAATCAAAATACAAGCAAACAAAAAAAGAGAAACAAAACTTTACCAATAAGTGTAAATTTAGCAAAGAAAAACTCAAAATAGGCTGGCGAAATGCAATTCACTCAAATTAAAACATACAACA ]
[+] EMBL BX608273 [ AAAAACTCAAAATAGGCTGGCGAAATGCAATTCACTCAAATTAAAACATACAACATAGGTGCATCAAAATCACCACCCACTCCCGCACCACTATGAATGTAGCACCATACCCACCTATATCTCCGATGAGATGTGTGGGTGGTTGTTAACACTAGTGGATCATTTTATTCTACTATTATTATTACTACTACTATTACTACTACTACTACTAATACTAATAATTCTTGTCGGCAAGGAGCACATTAAAGCGAACCTACATTTACACGCATCATCATTGCATCAACGGCAAACACTGAACTAAGGACAATAATATATTAGCGACAATAATAGTAAGCTAAACTACCATATAGAGCAAATCTTGCTAAAGTAAACGTTGATAGTGTTGTACATGTAATTTTACATCCCGATCGCAAGACTATTGGATCATATGTGGAGTGCAAACAAACATTTGAGCAACACATTGTACTAGTAATGCTATTATTTCCCTGTAGCGGGTGCAAATTGTGCTGAAAGTTGGTTTTTAACTTTAAGAATGTTATGTATTTTAGCCTGGCTTTTTATGGCCGAAGTTATTATTTGTTTACTGTATTACAATGCAAGCACGAAAATGCAAACTTTCATTTCTACTTGACTTGAAAGCGACAGTAAAACCGCAAACGGTACAGCCGTTTCCACCTACCGAACACACAACTAGCTCGGTATGCATTGCGGTGCGTAGCAGATAATGTGACCAATGCAATCTAAAACTTAAAAAAAGCTTGTCAAACCCAATATAAAAATGATCAAATTTTGATTACTTTATGTGTCTCTTTGTGT AAATAGCCATGTGTC ATTACATGACAATAACGAGTAAGGTGGTGTAATTAGATGAA ]
[+] EMBL BX610446 [ TGAACTAAGGACAATAATATATTAGCGACAATAATAGTAAGCTAAACTACCATATAGAGCAAATCTTGCTAAAGTAAACGTTGATAGTGTTGTACATGTAATTTTACATCCCGATCGCAAGACTATTGGATCATATGTGGAGTGCAAACAAACATTTGAGCAACACATTGTACTAGTAATGCTATTATTTCCCTGTAG ]
[+] EMBL BX613697 [ TAAGAATGTTATGTATTTTAGCCTGGCTTTTTATGGCCGAAGTTATTATTTGTTTACTGTATTACAATGCAAGCACGAAAATGCAAACTTTCATTTCTACTTGACTTGAAAGCGACAGTAAAACCGCAAACGGTACAGCCGTTTCCACCTACCGAACACACAACTAGCTCGGTATGCATTGCGGTGCGTAGCAGATAATGTGACCAATGCAATCTAAAACTTAAAAAAAGCTTGTCAAACCCAATATAAAAATGATCAAATTTTGATTACTTTATGTGTCTCTTTGTGTAAAATAGCCATGTGTCAATTACATGACAATAACGAGTAAGGTGGTGTAATTAGATGAAACAACAAAACATTAACTAAAGCAAAAAGGAACAGAAAAATCACACAATACTGAAAAGCAGTCATCATTACTCATTCTAAAACGCTGATTCTGACAAACAATATTGATTGAGCAAGGATAAAAAGGTGAAAAAGAAACATCACAATACAGCACCGATAAATGAACAGATCTGCTACACTATCGCGCTCTCGCACTGTGTATGAGTGAAGTGAATTTCAACCGGAATCATAGCTCCATCATATGAAGAAAATCGAGAGCACACTGTGTAATTTCCTTTGACATTCTATTATTTGTTTTTTGGAAACAGTTTCTACATTGTTCGCTACCAGTTTGA CAATATCGAAGCA ]
[+] EMBL BX608014 [ TGTCAATTACATGACAATAACGAGTAAGGTGGTGTAATTAGATGAAACAACAAAACATTAACTAAAGCAAAAAGGAACAGAAAAATCACACAATACTGAAAAGCAGTCATCATTACTCATTCTAAAACGCTGATTCTGACAAACAATATTGATTGAGCAAGGATAAAAAGGTGAAAAAGAAACATCACAATACAGCACCGATAAATGAACAGATCTGCTACACTATCGCGCTCTCGCACTGTGTATGAGTGAAGTGAATTTCAACCGGAATCATAGCTCCATCATATGAAGAAAATCGAGAGCACACTGTGTAATTTCCTTTGACATTCTATTATTTG TTTTTGGAAACAGTTTCTACATTGTTCGCTACCAG TTGACCAATATCGAAGCATAATTTCGAATCGAAGCGGCCATTTGGAAGCCGGTAAATGCGACCGCACACCCGCACGTTACTAGAGAAACGGCGGGAAAATCTTAATCCTAAACAAAAACTGATGATTGTGAGAGACAATAATTCTTTACAACTTTGAAGTACGCGAGCAAGGATATTACATAATAAGCAAGCAAAGCAAAAAGAGCAAACAAGCCAACCAACAA]
consensusID : consensus_7441#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence
[CGAGGTTNTGCGAGCAGAGCTCAAACAACTAATTAATGAATCAATAATACAAGCAAACAAAAAAAGAGAAACAAAACTTTACCAATAAGTGTAAATTTAGCAAAGAAAAACTCAAAATAGGCTGGCGAAATGCAATTCACTCAAATTAAAACATACAACATAGGTGCATCAAAATCACCACCCACTCCCGCACCACTATGAACTGTAGCACCATACCCACCTATATCTCCTATGCAGACTGCTGGCTGGGCTGGGCTCTGGCTCTACACCACTTCTACGCTGGCACTCACTCTTCTACTCCCTACCTACTNCTCACTCTACTACCTACCTACTATACCTACCTTATCTACTACCTTACACTTAACCTTACATACACTCTCCTTCTGCTCGCGCCNACAGAGGGCACGCCACCAGCTTTACCCACGGCCGCAACANTCCCCATACCACACTCNNCTACCAACCTGCCCACTTCAAGTTCAACATNATGGCCTNCTTCCCACACNCGCGTCGCCCCACACTACACACCCAACCCTTGGNACACCCCTTAACACGCGGAACGCAAAACCTAACACNTAACTCTAATTCAAAACACCCAGCAACACAACCACCTTAAACACCTACACCCTACACNACCGCCCTTNAAC]
[+] EMBL AL692121 [CGAGGTTNTGCGAGCAGAGCTCAAACAACTAATTAATGAATCAATAATACAAGCAAACAAAAAAAGAGAAACAAAACTTTACCAATAAGTGTAAATTTAGCAAAGAAAAACTCAAAATAGGCTGGCGAAATGCAATTCACTCAAATTAAAACATACAACATAGGTGCATCAAAATCACCACCCACTCCCGCACCACTATGAACTGTAGCACCATACCCACCTATATCTCCTATGCAGACTGCTGGCTGGGCTGGGCTCTGGCTCTACACCACTTCTACGCTGGCACTCACTCTTCTACTCCCTACCTACTNCTCACTCTACTACCTACCTACTATACCTACCTTATCTACTACCTTACACTTAACCTTACATACACTCTCCTTCTGCTCGCGCCNACAGAGGGCACGCCACCAGCTTTACCCACGGCCGCAACANTCCCCATACCACACTCNNCTACCAACCTGCCCACTTCAAGTTCAACATNATGGCCTNCTTCCCACACNCGCGTCGCCCCACACTACACACCCAACCCTTGGNACACCCCTTAACACGCGGAACGCAAAACCTAACACNTAACTCTAATTCAAAACACCCAGCAACACAACCACCTTAAACACCTACACCCTACACNACCGCCCTTNAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7441#0 CCGGTGCAACTAAGCTAGACTAAACTAGGATTAAGCTAATAGATATTGCTTTTTTATATG 60
consensus_7441#1 ------------------------------------------------------------
consensus_7441#0 TTCTTTACCCATCAATATATAATGCTAATTCGGTTCGGTACTGTACTGCTCACTCAAATA 120
consensus_7441#1 ------------------------------------------------------------
consensus_7441#0 TAGCTGTAAAGTGGTATGTAGGTGTAAAGAAAAATAAAAGGCACACAATGAAATTCGCGA 180
consensus_7441#1 ------------------------------------------------------------
consensus_7441#0 TGGGTGAATTACTGTTCTGGTGGAATTAAAATTTGCACACATTTAGCTACACCTTCTTCG 240
consensus_7441#1 ------------------------------------------------------------
consensus_7441#0 TTTATCACTAGATGGCGAAAGTGAAAGTTTATTGTAATCACAATGATTTTTCGATTCAAT 300
consensus_7441#1 ------------------------------------------------------------
consensus_7441#0 TGCGACACACATTTTGGCAATACAAACAGAAACCAAAACCAGCAAGGAGTTCAAAAGTTT 360
consensus_7441#1 ------------------------------------------------------------
consensus_7441#0 GCTCATTACAAAACATAAATTAAATGCATAAATGCTGCAAATAGCGATAAGTAAAACAGT 420
consensus_7441#1 ------------------------------------------------------------
consensus_7441#0 AAAAAAACCCTATCTAACAAAAATCATTCAAACACAAAATATAAAACCATGCAAATACAT 480
consensus_7441#1 ------------------------------------------------------------
consensus_7441#0 TCACAAACAGCACAACTAGCAGCGAAAAAGAAAGAAAAGACAATTGTAAATGGAAATTGA 540
consensus_7441#1 ------------------------------------------------------------
consensus_7441#0 ATTTCAAATTAAGTACTAAATGACAATAATAACATAAAAAGCCGAAATTGGAGCAGAGAA 600
consensus_7441#1 ------------------------------------------------------------
consensus_7441#0 AAAGAGAAAGAGAGCATTATATATATATACAGCATCCCATTGAAAGTGACGCGTTGTTTA 660
consensus_7441#1 ----------------------------------------------------------CG 2
consensus_7441#0 ATGTGCTGCGAGCAGAGCTCAAACAATAATTAAATGAATCAA-AATACAAGCAAACAAAA 719
consensus_7441#1 AGGTTNTGCGAGCAGAGCTCAAACAACTAATTAATGAATCAATAATACAAGCAAACAAAA 62
* ** ******************** * * ********** *****************
consensus_7441#0 AAAGAGAAACAAAACTTTACCAATAAGTGTAAATTTAGCAAAGAAAAACTCAAAATAGGC 779
consensus_7441#1 AAAGAGAAACAAAACTTTACCAATAAGTGTAAATTTAGCAAAGAAAAACTCAAAATAGGC 122
************************************************************
consensus_7441#0 TGGCGAAATGCAATTCACTCAAATTAAAACATACAACATAGGTGCATCAAAATCACCACC 839
consensus_7441#1 TGGCGAAATGCAATTCACTCAAATTAAAACATACAACATAGGTGCATCAAAATCACCACC 182
************************************************************
consensus_7441#0 CACTCCCGCACCACTATGAA-TGTAGCACCATACCCACCTATATCTCCGATGAGATGTGT 898
consensus_7441#1 CACTCCCGCACCACTATGAACTGTAGCACCATACCCACCTATATCTCCTATGCAGACTGC 242
******************** *************************** *** **
consensus_7441#0 GGGTGGTTGTTAACACTAG---TGGATCATTT-TATTCTACTATTATTATTACTACTACT 954
consensus_7441#1 TGGCTGGGCTGGGCTCTGGCTCTACACCACTTCTACGCTGGCACTCACTCTTCTACTCCC 302
** * * * ** * * * ** ** ** ** * * * ***** *
consensus_7441#0 A--TTACTACTACTACTACTAA-TACTAATAATTCTTGTCGGCAAGGAGCACATTAAAGC 1011
consensus_7441#1 TACCTACTNCTCACTCTACTACCTACCTACTATACCTACCT-TATCTACTACCTTACACT 361
**** ** ****** *** * ** * * * * * ** *** *
consensus_7441#0 GAACCT-ACATTTACACGCATCATCATTGCATCAACGGCAAACACTGAACTAAGGACAAT 1070
consensus_7441#1 TAACCTTACATACACTCTCCTTCTGCTCGCGCCNACAGAGGGCACGCCACCAGCTTTACC 421
***** **** ** * * * * * ** * ** * *** ** * *
consensus_7441#0 AATATAT-TAGCGACAATAATAGTAAGCTAAACTACCATATAGAGCAAATCTTGCTAAAG 1129
consensus_7441#1 CACGGCCGCAACANTCCCCATACCACACTCNNCTACCAACCTGCCCACTTCAAGTTCAAC 481
* * * *** * ** ****** * ** ** * * **
consensus_7441#0 TAAACGTTGATAGTGTTGTACATGTAATTTTACATCCCGATCGCAAGACTATTGGATCAT 1189
consensus_7441#1 ATNATGGCCTNCTTCCCACACNCGCGTCGCCCCACACTACACACCCAACCCTTGGNACAC 541
* * * ** * ** * * * ** **** **
consensus_7441#0 --------ATGTGGAGTGCAAA--CAAACATTTGAGCAACACATTGTACTAGTAATGCTA 1239
consensus_7441#1 CCCTTAACACGCGGAACGCAAAACCTAACACNTAACTCTAATTCAAAACACCCAGCAACA 601
* * *** ***** * **** * * * ** * *
consensus_7441#0 TTATTTCCCTGTAGCGGGTGCAAATTGTGCTGAAAGTTGGTTTTTAACTTTAAGAATGTT 1299
consensus_7441#1 CAACCACCTTA-AACACCTACACCCTACACNA----CCGCCCTTNAAC------------ 644
* ** * * * * ** * * * ** ***
consensus_7441#0 ATGTATTTTAGCCTGGCTTTTTATGGCCGAAGTTATTATTTGTTTACTGTATTACAATGC 1359
consensus_7441#1 ------------------------------------------------------------
consensus_7441#0 AAGCACGAAAATGCAAACTTTCATTTCTACTTGACTTGAAAGCGACAGTAAAACCGCAAA 1419
consensus_7441#1 ------------------------------------------------------------
consensus_7441#0 CGGTACAGCCGTTTCCACCTACCGAACACACAACTAGCTCGGTATGCATTGCGGTGCGTA 1479
consensus_7441#1 ------------------------------------------------------------
consensus_7441#0 GCAGATAATGTGACCAATGCAATCTAAAACTTAAAAAAAGCTTGTCAAACCCAATATAAA 1539
consensus_7441#1 ------------------------------------------------------------
consensus_7441#0 AATGATCAAATTTTGATTACTTTATGTGTCTCTTTGTGTAAATAGCCATGTGTCATTACA 1599
consensus_7441#1 ------------------------------------------------------------
consensus_7441#0 TGACAATAACGAGTAAGGTGGTGTAATTAGATGAAACAACAAAACATTAACTAAAGCAAA 1659
consensus_7441#1 ------------------------------------------------------------
consensus_7441#0 AAGGAACAGAAAAATCACACAATACTGAAAAGCAGTCATCATTACTCATTCTAAAACGCT 1719
consensus_7441#1 ------------------------------------------------------------
consensus_7441#0 GATTCTGACAAACAATATTGATTGAGCAAGGATAAAAAGGTGAAAAAGAAACATCACAAT 1779
consensus_7441#1 ------------------------------------------------------------
consensus_7441#0 ACAGCACCGATAAATGAACAGATCTGCTACACTATCGCGCTCTCGCACTGTGTATGAGTG 1839
consensus_7441#1 ------------------------------------------------------------
consensus_7441#0 AAGTGAATTTCAACCGGAATCATAGCTCCATCATATGAAGAAAATCGAGAGCACACTGTG 1899
consensus_7441#1 ------------------------------------------------------------
consensus_7441#0 TAATTTCCTTTGACATTCTATTATTTGTTTTTTGGAAACAGTTTCTACATTGTTCGCTAC 1959
consensus_7441#1 ------------------------------------------------------------
consensus_7441#0 CAGTTTGACAATATCGAAGCATAATTTCGAATCGAAGCGGCCATTTGGAAGCCGGTAAAT 2019
consensus_7441#1 ------------------------------------------------------------
consensus_7441#0 GCGACCGCACACCCGCACGTTACTAGAGAAACGGCGGGAAAATCTTAATCCTAAACAAAA 2079
consensus_7441#1 ------------------------------------------------------------
consensus_7441#0 ACTGATGATTGTGAGAGACAATAATTCTTTACAACTTTGAAGTACGCGAGCAAGGATATT 2139
consensus_7441#1 ------------------------------------------------------------
consensus_7441#0 ACATAATAAGCAAGCAAAGCAAAAAGAGCAAACAAGCCAACCAACAA 2186
consensus_7441#1 -----------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||