These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7445#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1352 fasta sequence [CCGCTTAACGCCCTCCTTTGCAGACGATGACGAGGTGGCGCGCAAGATAGCGGCCAAATTCTCTAGCGCCGGCCTGCGCGAACCGATGTCGTACGCGAACGTGGCCGACAAAGCGCAGCAGATCGGCAAAACGAAGCTCGCCATTACGCTGCTCGAGATGGAGACGAAGAAGAAGCTGCAGGTGCCGCTGCTGCTGAAGCTCGGCGCGTGCGAGAAGGCGCTGATTGCCGCCACCCAGTCGGGCGACATCGATCTCATCTACATGGCGATCCTCGAGATGAAGAACACGACCGCGCTCGCCAAGTTCCACATGACGATCCGGCGCTACCCGCTCGCCCAAAACCTGTACAAGAAGTACTGCCAGCTGAACAGCCTGTCCACGCTGAAGGACATCCACTCGCAGGAGGACGACTTCC--T-GTCGCA--GGCCGAGC-TGGCGCTGCGCGAAGCGCTTCAGCTCGGCAACCTGGACGCCTCGATACC-GGACATCAGTGGCAACTA-CCGCAAGGCGGGCAAGCCGGTCGAGGCCGACCTGGCGGACGAGACGAAGAAGCTGATCCGGCACCAGAAGCTGCTGCAGGACAAGTACCAGAAGGAC-TTCTTCGGGCTGGCGCTGCACGCGATGGTGCGCAAGCTGCTGCAGCTCGGGGACCAGCGGTACGCGGAGAAGCTCAAGAGCGAGTTCCGCATGTCCGACCGGCGCTTCTGGTGGCTGCGGGTGCAGACGTACGCGGACAACTACCAGTGGGAGGAGCTGGAGAAGCTCGGCCGGGCGAAGAAGAGCGCGATCGGGTACGAACCGTTCGTCGAGGTGTGCCTGGCGAAGCAGAACGTGACCGAGGCGAAAAAGTATCTGCCCCGGTGCGGCGAGGAAACGAAGCTGAAGTGGTATCTGCGGGCGGGTTGCTATGCCGATGCGGCGACCATCGCGTTCATGCAGAAGGACATCGACAGCTTGCTGAAGATTCACGACCACTGCAACGATTCCGCGCTGATGGCAAAGGTCGAAAACATGATCGGGCAGCTGTCCAGCAAGAAATAATGCGAGTCAGAAAAGGGCGAGGCGTGTTGAACCGTGATATCAGATAGACGCGAAGGATATATTAGTATATGTGTGTATGTGTTTTTTTATAAGTTTATATCTTTATATGTTTTGTAATCATCATTGTGCAGCCAAAGTGCTCCCGGTAGTAGGTTAAGGTTTAGCAAGCAAGCATGTGTAAATGTTATTACTCCATTCCCTTTTCGCTCGCAGTAGACTCACCAACGCTGTCAGCAGACAATTAGAGCTAGCGAGTACAGTACAGTTCAGTGTAATATCGAAGCGAATATACGCCGCAAAAGTAANGAATCAA] [+] EMBL BM605837 [CCGCTTAACGCCCTCCTTTGCAGACGATGACGAGGTGGCGCGCAAGATAGCGGCCAAATTCTCTAGCGCCGGCCTGCGCGAACCGATGTCGTACGCGAACGTGGCCGACAAAGCGCAGCAGATCGGCAAAACGAAGCTCGCCATTACGCTGCTCGAGATGGAGACGAAGAAGAAGCTGCAGGTGCCGCTGCTGCTGAAGCTCGGCGCGTGCGAGAAGGCGCTGATTGCCGCCACCCAGTCGGGCGACATCGATCTCATCTACATGGCGATCCTCGAGATGAAGAACACGACCGCGCTCGCCAAGTTCCACATGACGATCCGGCGCTACCCGCTCGCCCAAAACCTGTACAAGAAGTACTGCCAGCTGAACAGCCTGTCCACGCTGAAGGACATCCACTCGCAGGAGGACGACTTCC T GTCGCA GGCCGAGC TGGCGCTGCGCGAAGCGCTTCAGCTCGGCAACCTGGACGCCTCGATACC GGACATCAGTGGCAACTA CCGCAAGGCGGGCAAGCCGGTCGAGGCCGACCTGGCGGACGAGACGAAGAAGCTGATCCGGCACCAGAAGCTGCTGCAGGACAAGTACCAGAAGGAC TTCTTCGGGCTGGCGCTGCACGCGATGGTGCGCAAGCTGCTGCAGCTCGGGGACCAGCGGTACGCGGAGAAGCTCAAGAGCGAGTTCCGCATGTCCGACCGGCG ] [+] EMBL BM586044 [CCGCTTAACGCCCTCCTTTGCAGACGATGACGAGGTGGCGCGCAAGATAGCGGCCAAATTCTCTAGCGCCGGCCTGCGCGAACCGATGTCGTACGCGAACGTGGCCGACAAAGCGCAGCAGATCGGCAAAACGAAGCTCGCCATTACGCTGCTCGAGATGGAGACGAAGAAGAAGCTGCAGGTGCCGCTGCTGCTGAAGCTCGGCGCGTGCGAGAAGGCGCTGATTGCCGCCACCCAGTCGGGCGACATCGATCTCATCTACATGGCGATCCTCGAGATGAAGAACACGACCGCGCTCGCCAAGTTCCACATGACGATCCGGCGCTACCCGCTCGCCCAAAACCTGTACAAGAAGTACTGCCAGCTGAACAGCCTGTCCACGCTGAAGGACATCCACTCGCAGGAGGACATTTTCCCTTGGTCGCAAGGGCCGAGCTTGGCGCTGCGCGAAGCGCTTCAGCTCGGCAACCTGGACGCCTCGATACCGGGACATCAGTGGCAACTACCCGCAAGGCGGGCAAGCCGGTCGAGGCCGACCTGGCGGACGAGACGAAGAAGCTGATCCGGCACCAGAAGCTGCTGCAGGACAAGTACCAGAAGGACTTTCTTCGGGCTGGCGCTGCACGCGATGGTGCGCAAGCTGCTGCAGCTCGGGGGACAGCGGTACG ] [+] EMBL BX608564 [ TGGAGACGAAGAAGAAGCTGCAGGTGCCGCTGCTGCTGAAGCTCGGCGCGTGCGAGAAGGCGCTGATTGCCGCCACCCAGTCGGGCGACATCGATCTCATCTACATGGCGATCCTCGAGATGAAGAACACGACCGCGCTCGCCAAGTTCCACATGACGATCCGGCGCTACCCGCTCGCCCAAAACCTGTACAAGAAGTACTGCCAGCTGAACAGCCTGTCCACGCTGAAGGACATCCACTCGCAGGAGGACGACTTCC T GTCGCA GGCCGAGC TGGCGCTGCGCGAAGCGCTTCAGCTCGGCAACCTGGACGCCTCGATACC GGACATCAGTGGCAACTA CCGCAAGGCGGGCAAGCCGGTCGAGGCCGACCTGGCGGACGAGACGAAGAAGCTGATCCGGCACCAGAAGCTGCTGCAGGACAAGTACCAGAAGGAC TTCTTCGGGCTGGCGCTGCACGCGATGGTGCGCAAGCTGCTGCAGCTCGGGGACCAGCGGTACGCGGAGAAGCTCAAGAGCGAGTTCCGCATGTCCGACCGGCGCTTCTGGTGGCTGCGGGTGCAGACGTACGCGGACAACTACCAGTGGGAGGAGCTGGAGAAGCTCGGCCGGGCGAAGAAGAGCGCGATCGGGTACGAACCGTTCGTCGAGGTGTGCCTGGCGAAGCAGAACGTGACCGAGGCGAAAAAGTATCTGCCCCGGTGCGGCGAGGAAACGAAGCTGAAGTGGTATCTGCGGGCGGGTTGCTATGCCGATGCGGCGACCATCGCGTTCATGCAGAAGGACATCGACAGCTTGCTGAAGAT ] [+] EMBL BX611343 [ CTGCTGCAGCTCGCGGACCAGCGGTACGCGGAGAAGCTCAAGAGCGAGTTCCGCATGTCCGACCGGCGCTTCTGGTGGCTGCGGGTGCAGACGTACGCGGACAACTACCAGTGGGAGGAGCTGGAGAAGCTCGGCCGGGCGAAGAAGAGCGCGATCGGGTACGAACCGTTCGTCGAGGTGTGCCTGGCGAAGCAGAACGTGACCGAGGCGAAAAAGTATCTGCCCCGGTGCGGCGAGGAAACGAAGCTGAAGTGGTATCTGCGGGCGGGTTGCTATGCCGATGCGGCGACCATCGCGTTCATGCAGAAGGACATCGACAGCTTGCTGAAGATTCACGACCACTGCAACGATTCCGCGCTGATGGCAAAGGTCGAAAACATGATCGGGCAGCTGTCCAGCAAGAAATAATGCGAGTCAGAAAAGGGCGAGGCGTGTTGAACCGTGATATCAGATAGACGCGAAGGATATATTAGTATATGTGTGTATGTGTTTTTTTATAAGTTTATATCTTTATATGT ] [-] EMBL BX626217 [ CAGACGTACGCGGACAACTACCAGTGGGAGGAGCTGGAGAAGCTCGGCCGGGCGAAGAAGAGCGCGATCGGGTACGAACCGTTCGTCGAGGTGTGCCTGGCGAAGCAGAACGTGACCGAGGCGAAAAAGTATCTGCCCCGGTGCGGCGAGGAAACGAAGCTGAAGTGGTATCTGCGGGCGGGTTGCTATGCCGATGCGGCGACCATCGCGTTCATGCAGAAGGACATCGACAGCTTGCTGAAGATTCACGACCACTGCAACGATTCCGCGCTGATGGCAAAGGTCGAAAACATGATCGGGCAGCTGTCCAGCAAGAAATAATGCGAGTCAGAAAAGGGCGAGGCGTGTTGAACCGTGATATCAGATAGACGCGAAGGATATATTAGTATATGTGTGTATGTGTTTTTTTATAAGTTTATATCTTTATATGTTTTGTAATCATCATTGTGCAGCCAAAGTGCTCCCGGTAGTAGGTTAAGGTTTAGCAAGCAAGCATGTGTAAATGTTATTACTCCATTCCCTTTTCGCTCGCAGTAGACTCACCAACGCTGTCAGCAGACAATTAGAGCTAGCGAGTACAGTACAGTTCAGTGTAATATCGAAGCGAATATACGCCGCAAAAGTAANGAATCAA] [+] EMBL BX612543 [ ACGAACCGTTCGTCGAGGTGTGCCTGGCGAAGCAGAACGTGACCGAGGCGAAAAAGTATCTGCCCCGGTGCGGCGAGGAAACGAAGCTGAAGTGGTATCTGCGGGCGGGTTGCTATGCCGATGCGGCGACCATCGCGTTCATGCAGAAGGACATCGACAGCTTGCTGAAGATTCACGACCACTGCAACGATTCCGCGCTGATGGCAAAGGTCGAAAACATGATCGGGCAGCTGTCCAGCAAGAAATAATGCGAGTCAGAAAAGGGCGAGGCGTGTTGAACCGTGATATCAGATAGACGCGAAGGATATATTAGTATATGTGTGTATGTGTTTTTTTATAAGTTTATATCTTTATATGTTTTGTAATCATCATTGTGCAGCCAAAGTGCTCCCGGTAGTAGGTTAAGGTTTAGCAAGCAAGCATGTGTAAATGTTATTACTCCATTCCCTTTTCGCTCGCAGTAGACTCACCAACGCTGTCAGCAGACAATTAGAGCTAGCGAGTACAGTACAGTTCAGTGTAATATCGAAGCGAATATACGCCGCAAAAtataacg ] consensusID : consensus_7445#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence [CCGCGATGTGCCGCACGCTCAAGGTGCTGAATGTGCTGCGCGACCGGAACGTCGGCATCCCGATCACCATACAGCAGTTCAACCATCTGCAGCCGGTCGTTATACTGGATCGGCTTGTGTTCCGCAAGTACTACGGGCTGGCGATCCACATCGCCAAGTATCTGAAGCTGCAGGAGACGCGCATCCTGGAGCATTGGGCGTTCCAGAAGATTACGCACGACAAGAACGATGACGAGGTGGCGCGCAAGATAGCGGCCAAATTCTCTAGCGCCGGCCTGCGCGAACCGATGTCGTACGCGAACGTGGCCGACAAAGCGCAGCAGATCGGCAAAACGAAGCTCGCCATTACGCTGCTCGAGATGGAGACGAAGAAGAAGCTGCAGGTGCCGCTGCTGCTGAAGCTCGGCGCGTGCGAGAAGGCGCTGATTGCCGCCACCCAGTCGGGCGACATCGATCTCATCTACATGGCGATCCTCGAGATGAAGAACACGACCGCGCTCGCCAAGTTCCACATGACGATCCGGCGCTACCCGCTCGCCCAAAACCTTGTACAAGAAGTACTGCCAG] [+] EMBL BM593043 [CCGCGATGTGCCGCACGCTCAAGGTGCTGAATGTGCTGCGCGACCGGAACGTCGGCATCCCGATCACCATACAGCAGTTCAACCATCTGCAGCCGGTCGTTATACTGGATCGGCTTGTGTTCCGCAAGTACTACGGGCTGGCGATCCACATCGCCAAGTATCTGAAGCTGCAGGAGACGCGCATCCTGGAGCATTGGGCGTTCCAGAAGATTACGCACGACAAGAACGATGACGAGGTGGCGCGCAAGATAGCGGCCAAATTCTCTAGCGCCGGCCTGCGCGAACCGATGTCGTACGCGAACGTGGCCGACAAAGCGCAGCAGATCGGCAAAACGAAGCTCGCCATTACGCTGCTCGAGATGGAGACGAAGAAGAAGCTGCAGGTGCCGCTGCTGCTGAAGCTCGGCGCGTGCGAGAAGGCGCTGATTGCCGCCACCCAGTCGGGCGACATCGATCTCATCTACATGGCGATCCTCGAGATGAAGAACACGACCGCGCTCGCCAAGTTCCACATGACGATCCGGCGCTACCCGCTCGCCCAAAACCTTGTACAAGAAGTACTGCCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7445#0 ------------------------------------------------------------ consensus_7445#1 CCGCGATGTGCCGCACGCTCAAGGTGCTGAATGTGCTGCGCGACCGGAACGTCGGCATCC 60 consensus_7445#0 ------------------------------------------------------------ consensus_7445#1 CGATCACCATACAGCAGTTCAACCATCTGCAGCCGGTCGTTATACTGGATCGGCTTGTGT 120 consensus_7445#0 ------------------------------------------------------------ consensus_7445#1 TCCGCAAGTACTACGGGCTGGCGATCCACATCGCCAAGTATCTGAAGCTGCAGGAGACGC 180 consensus_7445#0 ----------------------CCGCTTAACGCCCTCCTTTGCAGACGATGACGAGGTGG 38 consensus_7445#1 GCATCCTGGAGCATTGGGCGTTCCAGAAGATTACGCACGACAAGAACGATGACGAGGTGG 240 ** * * * *************** consensus_7445#0 CGCGCAAGATAGCGGCCAAATTCTCTAGCGCCGGCCTGCGCGAACCGATGTCGTACGCGA 98 consensus_7445#1 CGCGCAAGATAGCGGCCAAATTCTCTAGCGCCGGCCTGCGCGAACCGATGTCGTACGCGA 300 ************************************************************ consensus_7445#0 ACGTGGCCGACAAAGCGCAGCAGATCGGCAAAACGAAGCTCGCCATTACGCTGCTCGAGA 158 consensus_7445#1 ACGTGGCCGACAAAGCGCAGCAGATCGGCAAAACGAAGCTCGCCATTACGCTGCTCGAGA 360 ************************************************************ consensus_7445#0 TGGAGACGAAGAAGAAGCTGCAGGTGCCGCTGCTGCTGAAGCTCGGCGCGTGCGAGAAGG 218 consensus_7445#1 TGGAGACGAAGAAGAAGCTGCAGGTGCCGCTGCTGCTGAAGCTCGGCGCGTGCGAGAAGG 420 ************************************************************ consensus_7445#0 CGCTGATTGCCGCCACCCAGTCGGGCGACATCGATCTCATCTACATGGCGATCCTCGAGA 278 consensus_7445#1 CGCTGATTGCCGCCACCCAGTCGGGCGACATCGATCTCATCTACATGGCGATCCTCGAGA 480 ************************************************************ consensus_7445#0 TGAAGAACACGACCGCGCTCGCCAAGTTCCACATGACGATCCGGCGCTACCCGCTCGCCC 338 consensus_7445#1 TGAAGAACACGACCGCGCTCGCCAAGTTCCACATGACGATCCGGCGCTACCCGCTCGCCC 540 ************************************************************ consensus_7445#0 AAAACCT-GTACAAGAAGTACTGCCAGCTGAACAGCCTGTCCACGCTGAAGGACATCCAC 397 consensus_7445#1 AAAACCTTGTACAAGAAGTACTGCCAG--------------------------------- 567 ******* ******************* consensus_7445#0 TCGCAGGAGGACGACTTCCTGTCGCAGGCCGAGCTGGCGCTGCGCGAAGCGCTTCAGCTC 457 consensus_7445#1 ------------------------------------------------------------ consensus_7445#0 GGCAACCTGGACGCCTCGATACCGGACATCAGTGGCAACTACCGCAAGGCGGGCAAGCCG 517 consensus_7445#1 ------------------------------------------------------------ consensus_7445#0 GTCGAGGCCGACCTGGCGGACGAGACGAAGAAGCTGATCCGGCACCAGAAGCTGCTGCAG 577 consensus_7445#1 ------------------------------------------------------------ consensus_7445#0 GACAAGTACCAGAAGGACTTCTTCGGGCTGGCGCTGCACGCGATGGTGCGCAAGCTGCTG 637 consensus_7445#1 ------------------------------------------------------------ consensus_7445#0 CAGCTCGGGGACCAGCGGTACGCGGAGAAGCTCAAGAGCGAGTTCCGCATGTCCGACCGG 697 consensus_7445#1 ------------------------------------------------------------ consensus_7445#0 CGCTTCTGGTGGCTGCGGGTGCAGACGTACGCGGACAACTACCAGTGGGAGGAGCTGGAG 757 consensus_7445#1 ------------------------------------------------------------ consensus_7445#0 AAGCTCGGCCGGGCGAAGAAGAGCGCGATCGGGTACGAACCGTTCGTCGAGGTGTGCCTG 817 consensus_7445#1 ------------------------------------------------------------ consensus_7445#0 GCGAAGCAGAACGTGACCGAGGCGAAAAAGTATCTGCCCCGGTGCGGCGAGGAAACGAAG 877 consensus_7445#1 ------------------------------------------------------------ consensus_7445#0 CTGAAGTGGTATCTGCGGGCGGGTTGCTATGCCGATGCGGCGACCATCGCGTTCATGCAG 937 consensus_7445#1 ------------------------------------------------------------ consensus_7445#0 AAGGACATCGACAGCTTGCTGAAGATTCACGACCACTGCAACGATTCCGCGCTGATGGCA 997 consensus_7445#1 ------------------------------------------------------------ consensus_7445#0 AAGGTCGAAAACATGATCGGGCAGCTGTCCAGCAAGAAATAATGCGAGTCAGAAAAGGGC 1057 consensus_7445#1 ------------------------------------------------------------ consensus_7445#0 GAGGCGTGTTGAACCGTGATATCAGATAGACGCGAAGGATATATTAGTATATGTGTGTAT 1117 consensus_7445#1 ------------------------------------------------------------ consensus_7445#0 GTGTTTTTTTATAAGTTTATATCTTTATATGTTTTGTAATCATCATTGTGCAGCCAAAGT 1177 consensus_7445#1 ------------------------------------------------------------ consensus_7445#0 GCTCCCGGTAGTAGGTTAAGGTTTAGCAAGCAAGCATGTGTAAATGTTATTACTCCATTC 1237 consensus_7445#1 ------------------------------------------------------------ consensus_7445#0 CCTTTTCGCTCGCAGTAGACTCACCAACGCTGTCAGCAGACAATTAGAGCTAGCGAGTAC 1297 consensus_7445#1 ------------------------------------------------------------ consensus_7445#0 AGTACAGTTCAGTGTAATATCGAAGCGAATATACGCCGCAAAAGTAANGAATCAA 1352 consensus_7445#1 ------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||