Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 7447 cluster # 7447       Sequences # 7       consensus # 6


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7447#0 length = 1006 sequences # 1  
consensus_7447#1 length = 804 sequences # 1  
consensus_7447#2 length = 772 sequences # 2  
consensus_7447#3 length = 739 sequences # 1  
consensus_7447#4 length = 688 sequences # 1  
consensus_7447#5 length = 566 sequences # 1  

consensusID : consensus_7447#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1006
fasta sequence
                              [GAGGCAGAATCGGCACGAGGTCATAATCGCCCCATAATCGTCGACTATTTCGCCGGGTTGCGTTTATGCGATTTCTTCTTCCAGTAGCAGTTAAGGATGATGCGAAGAAGAAGCTGATCGAGATACGATAGAAAGTTTGCAAAAAACAATGCTACAGCTTACGTTTAGCCTAGAAGCTGTGTTGCAGTGAATTATTTTGATTCATCGCACCTCACATATCTAGCATTGATTGTTTATCTTCTTCTTAATTAATAAATAGGTTGTGAATCATTTACTTGTTTGCCGCCGCTTTCACGGTCCAGTGGGTGGTAGGTGGTGTACGCAATAAATGTTCTTTATGATGTAGATCCTTGTATAGTCGCAGCTATCTTGGTAATGTGTTCTGTGTGAACATAAGCTGTTTCTGTTATGTCTCCTACCCTGAATTGTAAAGTCTTTCACGTGTGTACAACCCATGTATCGAGCAAACATCATTGCTCGTCCCAACTTCCGTTACAATTTAGTGAACCATTTTGTGGGTATTTCATTTTACCATTTTTAAGTAGCCTATACTCTGTTGTACAAAATGGTATACAGACACATACACGACAACACATACACACGTCAACTCCTTCCAGGATGATAACGAACTACAGGTGGTGTACAGTAGCCAGGTCAGGAAAGGAATCGGTTAGAATCAAGTTCCATGAANCCTTATTCNAAGATTATTTGNACCGTACGGCCCCAGGGGCCAAAGCAAAACTGGGAAGGAAACAGCACANCGAAAACAGTTCAGGACACCAAGGTGTTGCGCTTTCTGGGGCATTAAGGGCAACCGANTNTTAAGTTTCGGGCAAACTTTTGACTTTTCCCACACAGCGCCTGTGGTAAGTCCACCAGGGGTNGGTTCGTGGAAAAAGGCCCAANGAATTTTGGAACCNTGNGTTTGATACAANCCGAATATGGGGAGNAATGGTANCCTAGCAGCCNCGGGNGATTCNTAGACACGCGTTTGAACTTTTTTTGG]

[+] EMBL BX467818             [GAGGCAGAATCGGCACGAGGTCATAATCGCCCCATAATCGTCGACTATTTCGCCGGGTTGCGTTTATGCGATTTCTTCTTCCAGTAGCAGTTAAGGATGATGCGAAGAAGAAGCTGATCGAGATACGATAGAAAGTTTGCAAAAAACAATGCTACAGCTTACGTTTAGCCTAGAAGCTGTGTTGCAGTGAATTATTTTGATTCATCGCACCTCACATATCTAGCATTGATTGTTTATCTTCTTCTTAATTAATAAATAGGTTGTGAATCATTTACTTGTTTGCCGCCGCTTTCACGGTCCAGTGGGTGGTAGGTGGTGTACGCAATAAATGTTCTTTATGATGTAGATCCTTGTATAGTCGCAGCTATCTTGGTAATGTGTTCTGTGTGAACATAAGCTGTTTCTGTTATGTCTCCTACCCTGAATTGTAAAGTCTTTCACGTGTGTACAACCCATGTATCGAGCAAACATCATTGCTCGTCCCAACTTCCGTTACAATTTAGTGAACCATTTTGTGGGTATTTCATTTTACCATTTTTAAGTAGCCTATACTCTGTTGTACAAAATGGTATACAGACACATACACGACAACACATACACACGTCAACTCCTTCCAGGATGATAACGAACTACAGGTGGTGTACAGTAGCCAGGTCAGGAAAGGAATCGGTTAGAATCAAGTTCCATGAANCCTTATTCNAAGATTATTTGNACCGTACGGCCCCAGGGGCCAAAGCAAAACTGGGAAGGAAACAGCACANCGAAAACAGTTCAGGACACCAAGGTGTTGCGCTTTCTGGGGCATTAAGGGCAACCGANTNTTAAGTTTCGGGCAAACTTTTGACTTTTCCCACACAGCGCCTGTGGTAAGTCCACCAGGGGTNGGTTCGTGGAAAAAGGCCCAANGAATTTTGGAACCNTGNGTTTGATACAANCCGAATATGGGGAGNAATGGTANCCTAGCAGCCNCGGGNGATTCNTAGACACGCGTTTGAACTTTTTTTGG]


>consensus_7447#0 GAGGCAGAATCGGCACGAGGTCATAATCGCCCCATAATCGTCGACTATTTCGCCGGGTTG CGTTTATGCGATTTCTTCTTCCAGTAGCAGTTAAGGATGATGCGAAGAAGAAGCTGATCG AGATACGATAGAAAGTTTGCAAAAAACAATGCTACAGCTTACGTTTAGCCTAGAAGCTGT GTTGCAGTGAATTATTTTGATTCATCGCACCTCACATATCTAGCATTGATTGTTTATCTT CTTCTTAATTAATAAATAGGTTGTGAATCATTTACTTGTTTGCCGCCGCTTTCACGGTCC AGTGGGTGGTAGGTGGTGTACGCAATAAATGTTCTTTATGATGTAGATCCTTGTATAGTC GCAGCTATCTTGGTAATGTGTTCTGTGTGAACATAAGCTGTTTCTGTTATGTCTCCTACC CTGAATTGTAAAGTCTTTCACGTGTGTACAACCCATGTATCGAGCAAACATCATTGCTCG TCCCAACTTCCGTTACAATTTAGTGAACCATTTTGTGGGTATTTCATTTTACCATTTTTA AGTAGCCTATACTCTGTTGTACAAAATGGTATACAGACACATACACGACAACACATACAC ACGTCAACTCCTTCCAGGATGATAACGAACTACAGGTGGTGTACAGTAGCCAGGTCAGGA AAGGAATCGGTTAGAATCAAGTTCCATGAANCCTTATTCNAAGATTATTTGNACCGTACG GCCCCAGGGGCCAAAGCAAAACTGGGAAGGAAACAGCACANCGAAAACAGTTCAGGACAC CAAGGTGTTGCGCTTTCTGGGGCATTAAGGGCAACCGANTNTTAAGTTTCGGGCAAACTT TTGACTTTTCCCACACAGCGCCTGTGGTAAGTCCACCAGGGGTNGGTTCGTGGAAAAAGG CCCAANGAATTTTGGAACCNTGNGTTTGATACAANCCGAATATGGGGAGNAATGGTANCC TAGCAGCCNCGGGNGATTCNTAGACACGCGTTTGAACTTTTTTTGG



consensusID : consensus_7447#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 804
fasta sequence
                              [GAATTCCCCGCAGGTTAAGCGTAAAGCTCAATTTTTCACCGCCGCGCGATCGNGCGATCATGAGACATAGCTTAGCAAGTTATCGCATGTGTTAAAGATTGTTTCTTCCCGTATTAGTGTGTATACAATAATATTACACCGCAACGAACATGCTGACGTTGTTGTTTGCCAAAACCGTTTTTTAATACTTTTAACCAAGTAGTGCAGTGTCTATTGTTTATAACGTTTATTTCTCCCTAACCGCAACAGCGGAACGTGCGTATTGTGAGACCCTTCATAATCGCCCATAATCGTGACTATTTCGCCGGGTTGCGTTTATGCGATTTCTTCTTCCAGTAGCAGTTAAGGATGATGCGANGCAAGAAGCTGCATCGAGATACGATAGANAAGTTTGCCAACAAACAATGCTACAGCTTACGTTTAGCCTAGCAAGCTGTGTTGCAGTGAATTATATTTGATTCATCGCACCTCACATATCTAGCATTGATTGTCTTATCTTCTTCTTAATTAATAAATAGGTTGTGTATCNTAATTTCGTTACAAAATATTGGCATCGATCCATTCATTTTTATTTGCCGGGAAGAAACACTGGTCTTCCCAAACTACTGCGCCCCAAGATTNTGGTGCGAATCGCGAGGATCGTAATTGATGTGTAACAACCANTGTATCTACATCTTTCACTGTAAAACACATATTCTGGCATTGNTGTGANTCANTTACTTGGTTTGCCGCCGCTTTCACCGGCCCAGTGGCTGTCACGTGGTGNTACGCNACTACATGCNCNTCATCAACTGTAATCCCTGA]

[+] EMBL AL694958             [GAATTCCCCGCAGGTTAAGCGTAAAGCTCAATTTTTCACCGCCGCGCGATCGNGCGATCATGAGACATAGCTTAGCAAGTTATCGCATGTGTTAAAGATTGTTTCTTCCCGTATTAGTGTGTATACAATAATATTACACCGCAACGAACATGCTGACGTTGTTGTTTGCCAAAACCGTTTTTTAATACTTTTAACCAAGTAGTGCAGTGTCTATTGTTTATAACGTTTATTTCTCCCTAACCGCAACAGCGGAACGTGCGTATTGTGAGACCCTTCATAATCGCCCATAATCGTGACTATTTCGCCGGGTTGCGTTTATGCGATTTCTTCTTCCAGTAGCAGTTAAGGATGATGCGANGCAAGAAGCTGCATCGAGATACGATAGANAAGTTTGCCAACAAACAATGCTACAGCTTACGTTTAGCCTAGCAAGCTGTGTTGCAGTGAATTATATTTGATTCATCGCACCTCACATATCTAGCATTGATTGTCTTATCTTCTTCTTAATTAATAAATAGGTTGTGTATCNTAATTTCGTTACAAAATATTGGCATCGATCCATTCATTTTTATTTGCCGGGAAGAAACACTGGTCTTCCCAAACTACTGCGCCCCAAGATTNTGGTGCGAATCGCGAGGATCGTAATTGATGTGTAACAACCANTGTATCTACATCTTTCACTGTAAAACACATATTCTGGCATTGNTGTGANTCANTTACTTGGTTTGCCGCCGCTTTCACCGGCCCAGTGGCTGTCACGTGGTGNTACGCNACTACATGCNCNTCATCAACTGTAATCCCTGA]


>consensus_7447#1 GAATTCCCCGCAGGTTAAGCGTAAAGCTCAATTTTTCACCGCCGCGCGATCGNGCGATCA TGAGACATAGCTTAGCAAGTTATCGCATGTGTTAAAGATTGTTTCTTCCCGTATTAGTGT GTATACAATAATATTACACCGCAACGAACATGCTGACGTTGTTGTTTGCCAAAACCGTTT TTTAATACTTTTAACCAAGTAGTGCAGTGTCTATTGTTTATAACGTTTATTTCTCCCTAA CCGCAACAGCGGAACGTGCGTATTGTGAGACCCTTCATAATCGCCCATAATCGTGACTAT TTCGCCGGGTTGCGTTTATGCGATTTCTTCTTCCAGTAGCAGTTAAGGATGATGCGANGC AAGAAGCTGCATCGAGATACGATAGANAAGTTTGCCAACAAACAATGCTACAGCTTACGT TTAGCCTAGCAAGCTGTGTTGCAGTGAATTATATTTGATTCATCGCACCTCACATATCTA GCATTGATTGTCTTATCTTCTTCTTAATTAATAAATAGGTTGTGTATCNTAATTTCGTTA CAAAATATTGGCATCGATCCATTCATTTTTATTTGCCGGGAAGAAACACTGGTCTTCCCA AACTACTGCGCCCCAAGATTNTGGTGCGAATCGCGAGGATCGTAATTGATGTGTAACAAC CANTGTATCTACATCTTTCACTGTAAAACACATATTCTGGCATTGNTGTGANTCANTTAC TTGGTTTGCCGCCGCTTTCACCGGCCCAGTGGCTGTCACGTGGTGNTACGCNACTACATG CNCNTCATCAACTGTAATCCCTGA



consensusID : consensus_7447#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 772
fasta sequence
                              [TCGTTATGATGTGTAAACATGTATCTTATTTTAATGTAAAACATATTTTTGCATTGTTGTGAATCATTTACTTGTTTGCCGCCGCTTTCACGGTCCAGTGGGTGGTAGGTGGTGTACGCAATAAATGTTCTTTATGATGTAGATCCTTGTATAGTCGCAGCTATCTTGGTAATGTGTTCTGTGTGAACATAAGCTGTTTCTGTTATGTCTCCTACCCTGAATTGTAAAGTCTTTCACGTGTGTACAACCCATGTATCGAGCAAAGATGTTTAATTCTGTTACATGGGCAAACATCATTGCTCGTCCCAACTTCCGTTACAATTTAGTGAACCATTTTGTGGGTATTTCATTTTACCATTTTAAGTAGCCTATACTCTGTTGTACAAAATGGTATACAGACACATACACACACACATACACACTCACCTCCTTCAGGATGATAACGAACTACAGTGGTGTACAGTAGCCAGGTCAGGAAAGGAATCGTAGAATAGTCATAAACCTAATCAAAATATTGCCGTACGCCCAGGCCAAGCAAACTGCAGCAAACACACACAAACACTCAGACACAGGTGTGCGCTTCTGGCCATAAGGCAAACGATATAATTCGCCACTTTCTTCCACACGCTGTGTAGTCGCGGGTGGTGTGGAAAGCCAAGATTTGACCTGAGTGATACAACCGAATGGAGGATGTTTTCTTTCTCGTGA-TTCTAGACACGTATG-AATATATATTGACGCAAAGGCAATGAAGCGAAANTTTAACAAATACATT]

[+] EMBL BX613475             [TCGTTATGATGTGTAAACATGTATCTTATTTTAATGTAAAACATATTTTTGCATTGTTGTGAATCATTTACTTGTTTGCCGCCGCTTTCACGGTCCAGTGGGTGGTAGGTGGTGTACGCAATAAATGTTCTTTATGATGTAGATCCTTGTATAGTCGCAGCTATCTTGGTAATGTGTTCTGTGTGAACATAAGCTGTTTCTGTTATGTCTCCTACCCTGAATTGTAAAGTCTTTCACGTGTGTACAACCCATGTATCGAGCAAAGATGTTTAATTCTGTTACATGGGCAAACATCATTGCTCGTCCCAACTTCCGTTACAATTTAGTGAACCATTTTGTGGGTATTTCATTTTACCATTTTAAGTAGCCTATACTCTGTTGTACAAAATGGTATACAGACACATACACACACACATACACACTCACCTCCTTCAGGATGATAACGAACTACAGTGGTGTACAGTAGCCAGGTCAGGAAAGGAATCGTAGAATAGTCATAAACCTAATCAAAATATTGCCGTACGCCCAGGCCAAGCAAACTGCAGCAAACACACACAAACACTCAGACACAGGTGTGCGCTTCTGGCCATAAGGCAAACGATATAATTCGCCACTTTCTTCCACACGCTGTGTAGTCGCGGGTGGTGTGGAAAGCCAAGATTTGACCTGAGTGATACAACCGAATGGAGGATGTTTTCTTTCTCGTGA TTCTAGACACGTATG AATATATATTGACGCAAAGGCAATGAAGCGA                  ]
[+] EMBL BX627700             [                                                                                                     GTGGTTGGTGGTGTACGCAATAAATGTTCTTTATGATGTAGATCCTTGTATAGTCGCAGGCATCTTGGTAATGTGTTCTGTGTGAACATAAGCTGTTTCTGTTATGTCTCCTACCCTGAATTGTAAAGTCTTTCACGTGTGTACAACCCATGTATCGAGCAAAGATGTTTAATTCTGTTACATGGGCAAACATCATTGCTCGTCCCAACTTCCGTTACAATTTAGTGAACCATTTTGTGGGTATTTCATTTTACCATTTTAAGTAGCCTATACTCTGTTGTACAAAATGGTATACAGACACATACACACACACATACACACTCACCTCCTTCAGGATGATAACGAACTACAGTGGTGTACAGTAGCCAGGTCAGGAAAGGAATCGTAGAATAGTCATAAACCTAATCAAAATATTGCCGTACGCCCAGGCCAAGCCAACTGCAGCAAACACACACAAACACTCAGACACAGGTGTGCGCTTCTGGCCATNAGGCAAACGATATAATTCGCCACTTTCTTCCACACGCTGTGTAGTCGCGGGTGGTGTGGAAAGCCAAGATTTGAACTGAGTGATACAACCGAATGGAGGATGTTTTCTTTCGCGTGATTTCTAGACACGTATGAAATATATATTGACNCAAAGGCAATGAAGCCGAANTTTAACAAATACATT]


>consensus_7447#2 TCGTTATGATGTGTAAACATGTATCTTATTTTAATGTAAAACATATTTTTGCATTGTTGT GAATCATTTACTTGTTTGCCGCCGCTTTCACGGTCCAGTGGGTGGTAGGTGGTGTACGCA ATAAATGTTCTTTATGATGTAGATCCTTGTATAGTCGCAGCTATCTTGGTAATGTGTTCT GTGTGAACATAAGCTGTTTCTGTTATGTCTCCTACCCTGAATTGTAAAGTCTTTCACGTG TGTACAACCCATGTATCGAGCAAAGATGTTTAATTCTGTTACATGGGCAAACATCATTGC TCGTCCCAACTTCCGTTACAATTTAGTGAACCATTTTGTGGGTATTTCATTTTACCATTT TAAGTAGCCTATACTCTGTTGTACAAAATGGTATACAGACACATACACACACACATACAC ACTCACCTCCTTCAGGATGATAACGAACTACAGTGGTGTACAGTAGCCAGGTCAGGAAAG GAATCGTAGAATAGTCATAAACCTAATCAAAATATTGCCGTACGCCCAGGCCAAGCAAAC TGCAGCAAACACACACAAACACTCAGACACAGGTGTGCGCTTCTGGCCATAAGGCAAACG ATATAATTCGCCACTTTCTTCCACACGCTGTGTAGTCGCGGGTGGTGTGGAAAGCCAAGA TTTGACCTGAGTGATACAACCGAATGGAGGATGTTTTCTTTCTCGTGATTCTAGACACGT ATGAATATATATTGACGCAAAGGCAATGAAGCGAAANTTTAACAAATACATT



consensusID : consensus_7447#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 739
fasta sequence
                              [CCTACNCAGCAGATCGCCGAGTTATCCTTGTATAGTCGCAGCTACCTTGGTAATGTGTTCTGTGTGAACATAAGCTGTTCTCTGTTATGTCTCCTACCCTGAATTGTAAAGTCTTCTCACGTGTGTACAACCCATGTATCGAGCAAAGATGTTTAACTNTCTTGNTACATGGGCCAAACATCATNTGTCGTCCCAACTTCCGTTCACAATTTAGTGAACCATATNTCNTGTGGGTATTTCATTTTACCATATTTAAGTAGCCTATACTCTGTTGTACAAAATGGTATACAGACACATACACACACACATACACCACTCACCTCCTTCAGGATGATAACGAACTACAGTGGTGTACNGCTAGCCAGGTCAGGAAAGGAATCGTAGAATAGTCATAAACCTAATCAAAAGTACTTGCCGTACAGCCCAGGCAAGCAAACTGCNAGCAAACACGACACAAACACTCAGGACACAGGTGTGCGCTTCTGGCCCATCAACGGCGAAAGCGAGTATAACTTCGGCAACTTTTCNTTCCCACACGCTGTGGTANCATNCCGCGCGGAGTGGCTGCTGAACAAANGCGCACACGGAATNNTGAANCCTGANGTTGANTCACACACCCGGACAACTGGACGGANTGTTTGNCCTTTATCGTCGGCTGAGTTTCTAGGNACCACGTATGNAACTATATTATTTGAACGCACAAAGGCAATGACACGCGAAGATTNTACAANANTAGNAC]

[+] EMBL AL933392             [CCTACNCAGCAGATCGCCGAGTTATCCTTGTATAGTCGCAGCTACCTTGGTAATGTGTTCTGTGTGAACATAAGCTGTTCTCTGTTATGTCTCCTACCCTGAATTGTAAAGTCTTCTCACGTGTGTACAACCCATGTATCGAGCAAAGATGTTTAACTNTCTTGNTACATGGGCCAAACATCATNTGTCGTCCCAACTTCCGTTCACAATTTAGTGAACCATATNTCNTGTGGGTATTTCATTTTACCATATTTAAGTAGCCTATACTCTGTTGTACAAAATGGTATACAGACACATACACACACACATACACCACTCACCTCCTTCAGGATGATAACGAACTACAGTGGTGTACNGCTAGCCAGGTCAGGAAAGGAATCGTAGAATAGTCATAAACCTAATCAAAAGTACTTGCCGTACAGCCCAGGCAAGCAAACTGCNAGCAAACACGACACAAACACTCAGGACACAGGTGTGCGCTTCTGGCCCATCAACGGCGAAAGCGAGTATAACTTCGGCAACTTTTCNTTCCCACACGCTGTGGTANCATNCCGCGCGGAGTGGCTGCTGAACAAANGCGCACACGGAATNNTGAANCCTGANGTTGANTCACACACCCGGACAACTGGACGGANTGTTTGNCCTTTATCGTCGGCTGAGTTTCTAGGNACCACGTATGNAACTATATTATTTGAACGCACAAAGGCAATGACACGCGAAGATTNTACAANANTAGNAC]


>consensus_7447#3 CCTACNCAGCAGATCGCCGAGTTATCCTTGTATAGTCGCAGCTACCTTGGTAATGTGTTC TGTGTGAACATAAGCTGTTCTCTGTTATGTCTCCTACCCTGAATTGTAAAGTCTTCTCAC GTGTGTACAACCCATGTATCGAGCAAAGATGTTTAACTNTCTTGNTACATGGGCCAAACA TCATNTGTCGTCCCAACTTCCGTTCACAATTTAGTGAACCATATNTCNTGTGGGTATTTC ATTTTACCATATTTAAGTAGCCTATACTCTGTTGTACAAAATGGTATACAGACACATACA CACACACATACACCACTCACCTCCTTCAGGATGATAACGAACTACAGTGGTGTACNGCTA GCCAGGTCAGGAAAGGAATCGTAGAATAGTCATAAACCTAATCAAAAGTACTTGCCGTAC AGCCCAGGCAAGCAAACTGCNAGCAAACACGACACAAACACTCAGGACACAGGTGTGCGC TTCTGGCCCATCAACGGCGAAAGCGAGTATAACTTCGGCAACTTTTCNTTCCCACACGCT GTGGTANCATNCCGCGCGGAGTGGCTGCTGAACAAANGCGCACACGGAATNNTGAANCCT GANGTTGANTCACACACCCGGACAACTGGACGGANTGTTTGNCCTTTATCGTCGGCTGAG TTTCTAGGNACCACGTATGNAACTATATTATTTGAACGCACAAAGGCAATGACACGCGAA GATTNTACAANANTAGNAC



consensusID : consensus_7447#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 688
fasta sequence
                              [CCGGTTAGTATCATTATTTCAATCGCTTAATTTGTCACATATGGCCGTACATTTGAACGCTTATTGTGGCATAGATAGAACAGCAAAAAGGGAAAGCTCCCGCCAGAAGAAGACCGCCAAGAGTTGCATCTACCAAAACTGTAATTTAATAGTACCGCAAGCTGGAATAATGCCACTAGTGTTGTGTGTGTACAGGATAAGCGTAAAGCTCAATTTTTCACCGCCGCGCGATCGAGCGATCACGAGACATAGCTTAGCAAGTTATCGCATGTGTTAAAGATTTTTTCTTCCCGTATTAGTGTGTATACAATAATATTACACCGCAACGAACATGCTGACGTTGTTGTTTGCCAAAACCGTTTTTTAATACTTTTAACCAAGTAGTGCAGTGTCTATTGTTTATAACGTATATTTCTCCCTAACCGCAACAGCGGAACGTGCGTATTGTGAGACCCTTCATAATCGCCCCATAATCGTGACTATTTCGCCGGGTTGCGTTTATGGGATTTCTTCTTCCAGTAGCAGTTAAGGATGATGCGTAGAAGAAGTTGATCGAGATACGATAGAAAGTTTGCAAAAAACAATGCTACAGCTTACGTTTAGCCTAGAAGCTGTGTTGCAGTGGAATTCTTTTGATTCATCGCACCTCACATATCTAGCATTGATTGGTTATCTTCTTCTTAATTAA]

[+] EMBL BM619841             [CCGGTTAGTATCATTATTTCAATCGCTTAATTTGTCACATATGGCCGTACATTTGAACGCTTATTGTGGCATAGATAGAACAGCAAAAAGGGAAAGCTCCCGCCAGAAGAAGACCGCCAAGAGTTGCATCTACCAAAACTGTAATTTAATAGTACCGCAAGCTGGAATAATGCCACTAGTGTTGTGTGTGTACAGGATAAGCGTAAAGCTCAATTTTTCACCGCCGCGCGATCGAGCGATCACGAGACATAGCTTAGCAAGTTATCGCATGTGTTAAAGATTTTTTCTTCCCGTATTAGTGTGTATACAATAATATTACACCGCAACGAACATGCTGACGTTGTTGTTTGCCAAAACCGTTTTTTAATACTTTTAACCAAGTAGTGCAGTGTCTATTGTTTATAACGTATATTTCTCCCTAACCGCAACAGCGGAACGTGCGTATTGTGAGACCCTTCATAATCGCCCCATAATCGTGACTATTTCGCCGGGTTGCGTTTATGGGATTTCTTCTTCCAGTAGCAGTTAAGGATGATGCGTAGAAGAAGTTGATCGAGATACGATAGAAAGTTTGCAAAAAACAATGCTACAGCTTACGTTTAGCCTAGAAGCTGTGTTGCAGTGGAATTCTTTTGATTCATCGCACCTCACATATCTAGCATTGATTGGTTATCTTCTTCTTAATTAA]


>consensus_7447#4 CCGGTTAGTATCATTATTTCAATCGCTTAATTTGTCACATATGGCCGTACATTTGAACGC TTATTGTGGCATAGATAGAACAGCAAAAAGGGAAAGCTCCCGCCAGAAGAAGACCGCCAA GAGTTGCATCTACCAAAACTGTAATTTAATAGTACCGCAAGCTGGAATAATGCCACTAGT GTTGTGTGTGTACAGGATAAGCGTAAAGCTCAATTTTTCACCGCCGCGCGATCGAGCGAT CACGAGACATAGCTTAGCAAGTTATCGCATGTGTTAAAGATTTTTTCTTCCCGTATTAGT GTGTATACAATAATATTACACCGCAACGAACATGCTGACGTTGTTGTTTGCCAAAACCGT TTTTTAATACTTTTAACCAAGTAGTGCAGTGTCTATTGTTTATAACGTATATTTCTCCCT AACCGCAACAGCGGAACGTGCGTATTGTGAGACCCTTCATAATCGCCCCATAATCGTGAC TATTTCGCCGGGTTGCGTTTATGGGATTTCTTCTTCCAGTAGCAGTTAAGGATGATGCGT AGAAGAAGTTGATCGAGATACGATAGAAAGTTTGCAAAAAACAATGCTACAGCTTACGTT TAGCCTAGAAGCTGTGTTGCAGTGGAATTCTTTTGATTCATCGCACCTCACATATCTAGC ATTGATTGGTTATCTTCTTCTTAATTAA



consensusID : consensus_7447#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 566
fasta sequence
                              [CGCACATGCTGCCTTTTTTTTTATTTTTTTTGGCAACAACAACGTCAGCATGTTCGTTGCGGTGTAATATTATTGTATACACACTAATACGGGAAGAAACAATCTTTAACACATGCGATAACTTGCTAAGCTATGTCTCATGATCGCTCGATCGCGCGGCGGTGAAAAATTGAGCTTTACGCTTATCCTGTACACACACAACACTAGTGGCATTATTCCAGCTTGCGGTACTATTAAATTACAGTTTTGGTAGATGCAACTCTTGGCGGTCTTCTTCTGGCGGGAGCTTTCCCTTTTTGCTGTTCTATCTATGCCACAATAAGCGTTCAAATGTACGGCCATATGTGACAAATTAAGCGATTGAAATAATGATACTAACACTAACCAATAAAAATGTACACCGTGTAACAAAAACTTCTACTTCGCTAGTCTTTCGTACTTCTTTTTTTCTACCTGAACGAGTTCCAGTTAAAGAGCAGCGGGGAACTATGTGCAATATTTCGTGTAAAGCATCTTCCATATATACAACTATCGTAGGTACGTTACGACCTAAATTATTCTCTCCT]

[+] EMBL BX466742             [CGCACATGCTGCCTTTTTTTTTATTTTTTTTGGCAACAACAACGTCAGCATGTTCGTTGCGGTGTAATATTATTGTATACACACTAATACGGGAAGAAACAATCTTTAACACATGCGATAACTTGCTAAGCTATGTCTCATGATCGCTCGATCGCGCGGCGGTGAAAAATTGAGCTTTACGCTTATCCTGTACACACACAACACTAGTGGCATTATTCCAGCTTGCGGTACTATTAAATTACAGTTTTGGTAGATGCAACTCTTGGCGGTCTTCTTCTGGCGGGAGCTTTCCCTTTTTGCTGTTCTATCTATGCCACAATAAGCGTTCAAATGTACGGCCATATGTGACAAATTAAGCGATTGAAATAATGATACTAACACTAACCAATAAAAATGTACACCGTGTAACAAAAACTTCTACTTCGCTAGTCTTTCGTACTTCTTTTTTTCTACCTGAACGAGTTCCAGTTAAAGAGCAGCGGGGAACTATGTGCAATATTTCGTGTAAAGCATCTTCCATATATACAACTATCGTAGGTACGTTACGACCTAAATTATTCTCTCCT]


>consensus_7447#5 CGCACATGCTGCCTTTTTTTTTATTTTTTTTGGCAACAACAACGTCAGCATGTTCGTTGC GGTGTAATATTATTGTATACACACTAATACGGGAAGAAACAATCTTTAACACATGCGATA ACTTGCTAAGCTATGTCTCATGATCGCTCGATCGCGCGGCGGTGAAAAATTGAGCTTTAC GCTTATCCTGTACACACACAACACTAGTGGCATTATTCCAGCTTGCGGTACTATTAAATT ACAGTTTTGGTAGATGCAACTCTTGGCGGTCTTCTTCTGGCGGGAGCTTTCCCTTTTTGC TGTTCTATCTATGCCACAATAAGCGTTCAAATGTACGGCCATATGTGACAAATTAAGCGA TTGAAATAATGATACTAACACTAACCAATAAAAATGTACACCGTGTAACAAAAACTTCTA CTTCGCTAGTCTTTCGTACTTCTTTTTTTCTACCTGAACGAGTTCCAGTTAAAGAGCAGC GGGGAACTATGTGCAATATTTCGTGTAAAGCATCTTCCATATATACAACTATCGTAGGTA CGTTACGACCTAAATTATTCTCTCCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7447#1      ------------------------------------------------------------
consensus_7447#4      ------------------------------------------------------------
consensus_7447#2      ------------------------------------------------------------
consensus_7447#3      ------------------------------------------------------------
consensus_7447#0      GAGGCAGAATCGGCACGAGGTCATAATCGCCCCATAATCGTCGACTATTTCGCCGGGTTG 60
consensus_7447#5      ------------------------------------------------------------
                                                                                  

consensus_7447#1      ------------------------------------------------------------
consensus_7447#4      ------------------------------------------------------------
consensus_7447#2      ------------------------------------------------------------
consensus_7447#3      ------------------------------------------------------------
consensus_7447#0      CGTTTATGCGATTTCTTCTTCCAGTAGCAGTTAAGGATGATGCGAAGAAGAAGCTGATCG 120
consensus_7447#5      ------------------------------------------------------------
                                                                                  

consensus_7447#1      ------------------------------------------------------------
consensus_7447#4      ------------------------------CCGGTTAGTATCATTATTTCAATCGCTTAA 30
consensus_7447#2      ------------------------------------------------------------
consensus_7447#3      ------------------------------------------------------------
consensus_7447#0      AGATACGATAGAAAGTTTGCAAAAAACAATGCTACAGCTTACGTTTAGCCTAGAAGCTGT 180
consensus_7447#5      ------------------------------------------------------------
                                                                                  

consensus_7447#1      ------------------------------------------------------------
consensus_7447#4      TTTGTCACATATGGCCGTACATTTGAACGCTTATTGTGGCATAGATAGAACAGCAAAAAG 90
consensus_7447#2      ---------------------TCGTTATGATGTGTAAACATGTATCTTATT-TTAATGTA 38
consensus_7447#3      ------------------------------------------------------------
consensus_7447#0      GTTGCAGTGAATTATTTTGATTCATCGCACCTCACATATCTAGCATTGATTGTTTATCTT 240
consensus_7447#5      ------------------------------------------------------------
                                                                                  

consensus_7447#1      ------------------------------------------------------------
consensus_7447#4      GGAAAGCTCCCGCCAGAAGAAGACCGCCAAGAGTTGCATCTACCAAAACTGTAATTTAAT 150
consensus_7447#2      AAACATATTTTTGCATT--GTTGTGAATCATTTACTTGTTTGCCGCCGCTTTCACGGTCC 96
consensus_7447#3      ------------------------------------------------------------
consensus_7447#0      CTTCTTAATTAATAAATAGGTTGTGAATCATTTACTTGTTTGCCGCCGCTTTCACGGTCC 300
consensus_7447#5      -----------------------CGCACATGCTGCCTTTTTTTTTATTTTTTTTGGCAAC 37
                                                                                  

consensus_7447#1      --------------------------------GAATTCCCCGCAGGTTAAGCGTAAAGCT 28
consensus_7447#4      AGTACCGCAAGCTGGAATAATGCCACTAGTGTTGTGTGTGTACAGGATAAGCGTAAAGCT 210
consensus_7447#2      AGTGGGTGGTAGGTGGTGTACGCAATAAATGTTCTTTATGATGTAGATCCTTGTATAGTC 156
consensus_7447#3      ----------------CCTACNCAGCAGAT---CGCCGAGTT----ATCCTTGTATAGTC 37
consensus_7447#0      AGTGGGTGGTAGGTGGTGTACGCAATAAATGTTCTTTATGATGTAGATCCTTGTATAGTC 360
consensus_7447#5      AACAACGTCAGCATGTTCGTTGCGGTGTAA---TATTATTGTATACACACTAATACGGGA 94
                                                                           **  *  

consensus_7447#1      -CAATTTTTCACCGCCGCGCGATC-GNGCGATCATGAGACATAGCTTAGCAAGTTATCG- 85
consensus_7447#4      -CAATTTTTCACCGCCGCGCGATC-GAGCGATCACGAGACATAGCTTAGCAAGTTATCG- 267
consensus_7447#2      -GCAGCTATCTTGGTAATGTGTTCTGTGTGAACATAAGCTGTT-TCTGTTATGTCTCCTA 214
consensus_7447#3      -GCAGCTACCTTGGTAATGTGTTCTGTGTGAACATAAGCTGTTCTCTGTTATGTCTCCTA 96
consensus_7447#0      -GCAGCTATCTTGGTAATGTGTTCTGTGTGAACATAAGCTGTT-TCTGTTATGTCTCCTA 418
consensus_7447#5      AGAAACAATCTTTAACACATGCGATAACTTGCTAAGCTATGTCTCATGATCGCTCGATCG 154
                         *     *          *            *       *    *      *      

consensus_7447#1      -CATGTGTTAAAGATTGT--TTCTTCCCGTAT-TAGTGTGTATACAATAATATTACACCG 141
consensus_7447#4      -CATGTGTTAAAGATTTT--TTCTTCCCGTAT-TAGTGTGTATACAATAATATTACACCG 323
consensus_7447#2      CCCTGAATTGTAAAGTCT--T-TCACGTGTGTACAACCCATGTATCG-AGCAAAGATGTT 270
consensus_7447#3      CCCTGAATTGTAAAGTCT--TCTCACGTGTGTACAACCCATGTATCG-AGCAAAGATGTT 153
consensus_7447#0      CCCTGAATTGTAAAGTCT--T-TCACGTGTGTACAACCCATGTATCG-AGCAAA------ 468
consensus_7447#5      CGCGGCGGTGAAAAATTGAGCTTTACGCTTATCCTGTACACACACAACACTAGTGGC--- 211
                          *   *  * * *         *   * *           *    *  *        

consensus_7447#1      CAACGAACATGCTGACGTTGTTGTTTGCCAAAACCGTTTTTTAATACTTTTAACCAAGTA 201
consensus_7447#4      CAACGAACATGCTGACGTTGTTGTTTGCCAAAACCGTTTTTTAATACTTTTAACCAAGTA 383
consensus_7447#2      TAATTCT---GTTACATGGGC-AAACATCATTGCTCGTCCCAACTTCCGTT-ACAATTTA 325
consensus_7447#3      TAACTNTCTTGNTACATGGGCCAAACATCATNTGTCGTCCCAACTTCCGTTCACAATTTA 213
consensus_7447#0      -------------------------CATCATTGCTCGTCCCAACTTCCGTT-ACAATTTA 502
consensus_7447#5      -----------------------ATTATTCCAGCTTGCGGTACTATTAAATTACAGTTTT 248
                                                                        * **    * 

consensus_7447#1      GTGCAGTGTCTATTGTTTATAACGTTTATTTCTCCCTAACCGCAACAGCGGAACGTGCGT 261
consensus_7447#4      GTGCAGTGTCTATTGTTTATAACGTATATTTCTCCCTAACCGCAACAGCGGAACGTGCGT 443
consensus_7447#2      GTGAACC----ATTTTGTGGGTATTTCATTTTACCAT-TTTA-AGTAGCCTATACTCTGT 379
consensus_7447#3      GTGAACCATATNTCNTGTGGGTATTTCATTTTACCATATTTA-AGTAGCCTATACTCTGT 272
consensus_7447#0      GTGAACC----ATTTTGTGGGTATTTCATTTTACCATTTTTA-AGTAGCCTATACTCTGT 557
consensus_7447#5      GGTAGATG-CAACTCTTGGCGGTCTTCTTCTGGCGGGAGCTTTCCCTTTTTGCTGTTCTA 307
                      *              *        *   * *  *                     *    

consensus_7447#1      ATTGTGAGACCCTTCATAATCGCCC--ATAATCGTGACTATTTCGCCGGGTTGCGTTTAT 319
consensus_7447#4      ATTGTGAGACCCTTCATAATCGCCC-CATAATCGTGACTATTTCGCCGGGTTGCGTTTAT 502
consensus_7447#2      TGTACAAAATGGTATACAGACACATACACAC--ACACATACAC-ACTCACCTCCTTC-AG 435
consensus_7447#3      TGTACAAAATGGTATACAGACACATACACAC--ACACATACACCACTCACCTCCTTC-AG 329
consensus_7447#0      TGTACAAAATGGTATACAGACACATACACGACAACACATACACACGTCAACTCCTTCCAG 617
consensus_7447#5      TCTATGCCACAATAAGCGTTCAAATGTACGGCCATATGTGACAAATTAAGCGATTGAAAT 367
                        *     *   *       *      *          *                   * 

consensus_7447#1      GC-GATTTCTTCTTCCAGTAGCAGTTAAG--GATGATGCGANGCAAGAAGCTGCATCGAG 376
consensus_7447#4      GG-GATTTCTTCTTCCAGTAGCAGTTAAG--GATGATGCGTAG-AAGAAGTTG-ATCGAG 557
consensus_7447#2      GATGATAACGAACTACAG-TGGTGTACAG-TAGCCAGGTCAGGAAAGGAATCG--TAGAA 491
consensus_7447#3      GATGATAACGAACTACAG-TGGTGTACNGCTAGCCAGGTCAGGAAAGGAATCG--TAGAA 386
consensus_7447#0      GATGATAACGAACTACAGGTGGTGTACAG-TAGCCAGGTCAGGAAAGGAATCGGTTAGAA 676
consensus_7447#5      AATGATACTAACACTAACCAATAAAAATGTACACCGTGTAACAAAAACTTCTACTTCGCT 427
                         ***          *           *        *      **         * *  

consensus_7447#1      ATACGATAGANAAGTTTGCCAACAAACAATG-CTACAGCTTACGTTTA----GCC--TAG 429
consensus_7447#4      ATACGATAGAAA-GTTTGCAAA-AAACAATG-CTACAGCTTACGTTTA----GCC--TAG 608
consensus_7447#2      T--AGT--CATAAACC--TAATCAAAA--TA-TTGC--CGTACGCCCA---GGCC--AAG 535
consensus_7447#3      T--AGT--CATAAACC--TAATCAAAAG-TACTTGC--CGTACAGCCC---AGGC--AAG 432
consensus_7447#0      TCAAGTTCCATGAANCCTTATTCNAAGATTATTTGNACCGTACGGCCCCAGGGGCCAAAG 736
consensus_7447#5      A-GTCTTTCGTACTTCTTTTTTTCTACCTGA---ACGAGTTCCAGTTA-AAGAGCAGCGG 482
                                               *              * *           *    *

consensus_7447#1      CAAG-CTGTGTTGCAGTGAATTATATTTGATTCATCGCACCTCAC--ATATCTAGCATTG 486
consensus_7447#4      -AAG-CTGTGTTGCAGTGGAATTCTTTTGATTCATCGCACCTCAC--ATATCTAGCATTG 664
consensus_7447#2      CAAA-CTGCA--GCAA-ACAC-ACAC---AAACA-CTCAG-ACAC--AGGTGT-GCGCTT 582
consensus_7447#3      CAAA-CTGCNA-GCAA-ACACGACAC---AAACA-CTCAGGACAC--AGGTGT-GCGCTT 482
consensus_7447#0      CAAAACTGGGAAGGAA-ACAGCACANCGAAAACAGTTCAGGACACCAAGGTGTTGCGCTT 795
consensus_7447#5      GGAA-CTATGT-GCAA--TATTTCGTGTAAAGCATCTT---CCAT--ATATACAACTATC 533
                        *  **     * *    *         *  **        **   *  *    *  * 

consensus_7447#1      ATTGTCTTATCTTCTTCTTAATTAATAAATAGGTTGTGTATCNTAATTTCGTTACAAAAT 546
consensus_7447#4      ATTGG-TTATCTTCTTCTTAATTAA----------------------------------- 688
consensus_7447#2      -CTGGCC-----ATAAGGCAAACGA-TATAA---TTC--GCCACTT-------TCTTCCA 623
consensus_7447#3      -CTGGCCCATCAACGGCGAAAGCGAGTATAA---CTTCGGCAACTTTTC----NTTCCCA 534
consensus_7447#0      TCTGGGGCAT--TAAGGGCAACCGANTNTTAAGTTTCGGGCAAACTTTTGACTTTTCCCA 853
consensus_7447#5      GTAGGTACGTTACGACCTAAATTATTCTCTCCT--------------------------- 566
                         *               **                                       

consensus_7447#1      ATTGGCATCGATCCATTCATTTTTATTTGCCGGGAAGAAACACTGGTCTTCCCAAACTAC 606
consensus_7447#4      ------------------------------------------------------------
consensus_7447#2      CACGCTG--TG---TAGTCGCGGGTGGTGTGG----------AAAGC-----CAAGATTT 663
consensus_7447#3      CACGCTG--TGGTANCATNCCGCGCGGAGTGGCTGCTGAACAAANGCGCACACGGAATNN 592
consensus_7447#0      CACAGCGCCTGTGGTAAGTCCACCAGGGGTNGGTTCGTGGAAAAAGGCCCAANGAATTTT 913
consensus_7447#5      ------------------------------------------------------------
                                                                                  

consensus_7447#1      TGCGCCCCAAGATTNTGGTGCGAATCGCGAGGATCGTAATTGATGTGTAACAACCANTGT 666
consensus_7447#4      ------------------------------------------------------------
consensus_7447#2      ---GACCTGAG--TGAT------------ACAACCGAATGGAGGATGTTTTCTTTCTCGT 706
consensus_7447#3      TGAANCCTGANGTTGANTCACACACCCGGACAACTGGACGGANTGTTTGNCCTTTATCGT 652
consensus_7447#0      GGAACCNTGNGTTTGATACA---ANCCGAATATGGGGAGNAATGGTANCCTAGCAGCCNC 970
consensus_7447#5      ------------------------------------------------------------
                                                                                  

consensus_7447#1      ATCT-ACATCTTTCACTGTAAAACACATATTCTGGCATTGNTGTGANTCANTTACTTGGT 725
consensus_7447#4      ------------------------------------------------------------
consensus_7447#2      -------GATTCTAGACA---CGTATGAATATATATTG-------ACGCAAAGGCAATGA 749
consensus_7447#3      CGGCTGAGTTTCTAGGNACCACGTATGNAACTATATTATTTGAACGCACAAAGGCAATGA 712
consensus_7447#0      GGGN--GATTCNTAGACAC-GCGTTTGAACTTTTTTTGG--------------------- 1006
consensus_7447#5      ------------------------------------------------------------
                                                                                  

consensus_7447#1      TTGCCGCCGCTTTCACCGGCCCAGTGGCTGTCACGTGGTGNTACGCNACTACATGCNCNT 785
consensus_7447#4      ------------------------------------------------------------
consensus_7447#2      A--GCGAAANTTTAACAAATACATT----------------------------------- 772
consensus_7447#3      CACGCGAAGATTNTACAANANTAGNAC--------------------------------- 739
consensus_7447#0      ------------------------------------------------------------
consensus_7447#5      ------------------------------------------------------------
                                                                                  

consensus_7447#1      CATCAACTGTAATCCCTGA 804
consensus_7447#4      -------------------
consensus_7447#2      -------------------
consensus_7447#3      -------------------
consensus_7447#0      -------------------
consensus_7447#5      -------------------
                                         




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)