These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7448#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1242 fasta sequence [GGGGGGAGGCTGCGGAATTCCTCGAGAACTGTTGGCCTACTGGAAATTGGTTTCCCAAATTTCGCTCAATTGTGTTCGTCTTGCACATGCAAAAACAAATTGTGAAAAAGCGGTAAATAATCCTTTCCACCTACGAAAACCACGAAGTGCCGCTATTACCAACTCGTAAATATGGATCTGGAGCTCAAAAAGGCATTTACTGAAATGCAGGTGAACAAGATCGAGTCAACAAAGAAGATCCGGCTGCTTGATATGAAAATGGACAGTCTGAAGCTTTCGAAGCAACGCATTGAAGTAACGAATCGACACATCTCCAACCTCGCTCCAGAAACTAGAGTGTACGCGTCGGTGGGGCGTATGTACGTGCTGAACGATGTTCCGACACTAACCGAACAGCTGAAAACGACCCATGCTTCCTACGAAGAAATAATTACTCAGTGTGAAAAGAACAAAGACTTCTTGATC-AAAAATCTCAAGGAGCAGGAAGAGAGCCTTCGTGAGCTGGTGCAGCAGAAAAAGTCAGAAACAACCGAAACGAATGGAAAACCGGCGGAATAAACGCAATGCGTTGTGATTTACGTTAACAAGAACTACACTGCTTGCAGAATCACTGTTCTTTATTCAAGATGCTGTCCAAATCGAAATTAGCGTACGATCGAAACTCATTGCCTAAGTTACGTTCATGCTCTGGCCGAAATTCGCACATGCTAACACCGAAATGCTTCTTTGCCCAATCGTGCACTACGGCCCCAGAGCAAAGAACAATTTTGCCCTCCTGCTTGGTAATCTTTTTCACTATCACCCCCATCTTTTCAATACACTCTTCAGACAGGAACGGTGGGTCGGCGATTACCAGGTTGAATTGATGGGCATACGCGTCCATGTAGCCCGCATCAAATGCTCTATTGTAGTCATATTGCTGAAAGTTCTCTCCATAGGAAGCAAATCGTTCGTCAAATTCAAATAGCATAGCGTTCTTATTTTCCTTCACCACGTGCTTAAACGCAGACGGTGCAGATAGAAGCGCTACTTGAAACGTATCGGAAGGATTATTTTCTTGCAGATGTTTCACGATTAGTGCAAGTTTCTGTTTCGTTTCTTCGTTGTACCAAAATTGGCTTAGTTGCCAATTTTCTTCAAAGCATCCTGCCGACTCAGGTCCGGCTTCTTCAGAGCGCTCTTTTAAAGCCTTCTCTTGTAGGAACTGTTGCAAGATGAGCATCGTGTCTGCTGGTAAAACGC] [-] EMBL CNS08MP8 [GGGGGGAGGCTGCGGAATTCCTCGAGAACTGTTGGCCTACTGGAAATTGGTTTCCCAAATTTCGCTCAATCGTGTTCGTCTTGGACATGCAAAAACAAATTGTGAAAAAGCGGTAAATAATCCTTTCCACCTACGAAAACCACGAAGTGCCGCTATTACCCACTCGTAAATATGGATCTGGGGCTCAAAAAGGCATTTACTGAAATGCAGGTGAACAAGATCGAGTCAACAAAGAAGATCCGGCTACTTGATATGAAAATGGACAGTCTGAAGCTTTCGAAGCAACGCATTGAAGTAACGAATCGACACATCTCCAACCTTGCTCCAGAAACTAGAGTATACGCGTCGGTGGGGCGTATGTACGTGCTGAACGATGTTCCGACACTAACCGGACAGCTGAAAACGACCCATGCTTCCTACGAAGAAATAATTACTCAGTGTGAAAAGAACAAAGACTTCTTGATC AAAAATCTCAAGGAGCAGGAAGAGAGCCTTCGTGAGCTGGTGCAGCAGAAAAAGTCAGAAACAACCGAAACGAATGGAAAACCGGCGGAATAA ] [+] EMBL BM596127 [ ccggtcAAATTGGTTTCCCAAATTTCGCTCAATTGTGTTCGTCTTGCACATGCAAAAACAAATTGTGAAAAAGCGGTAAATAATCCTTTCCACCTACGAAAACCACGAAGTGCCGCTATTACCAACTCGTAAATATGGATCTGGAGCTCAAAAAGGCATTTACTGAAATGCAGGTGAACAAGATCGAGTCAACAAAGAAGATCCGGCTGCTTGATATGAAAATGGACAGTCTGAAGCTTTCGAAGCAACGCATTGAAGTAACGAATCGACACATCTCCAACCTCGCTCCAGAAACTAGAGTGTACGCGTCGGTGGGGCGTATGTACGTGCTGAACGATGTTCCGACACTAACCGAACAGCTGAAAACGACCCATGCTTCCTACGAAGAAATAATTACTCAGTGTGAAAAGAACAAAGACTTCTTGATC AAAAATCTCAAGGAGCAGGAAGAGAGCCTTCGTGAGCTGGTGCAGCAGAAAAAGTCAGAAACAACCGAAACGAATGGAAA ] [+] EMBL BM649535 [ CCGAAATTTCGCTCAATTGTGTTCGTCTTGCACATGCAAAAACAAATTGTGAAAAAGCGGTAAATAATCCTTTCCACCTACGAAAACCACGAAGTGCCGCTATTACCAACTCGTAAATATGGATCTGGAGCTCAAAAAGGCATTTACTGAAATGCAGGTGAACAAGATCGAGTCAACAAAGAAGATCCGGCTGCTTGATATGAAAATGGACAGTCTGAAGCTTTCGAAGCAACGCATTGAAGTAACGAATCGACACATCTCCAACCTCGCTCCAGAAACTAGAGTGTACGCGTCGGTGGGGCGTATGTACGTGCTGAACGATGTTCCGACACTAACCGAACAGCTGAAAACGACCCATGCTTCCTACGAAGAAATAATTACTCAGTGTGAAAAGAACAAAGACTTCTTGATCAAAAAATCTCAAGGAGCAGGAAGAGAGCCTTCGTGAGCTGGTGCAGCAGAAAAAGTCAGAAACAACCGAAACGAATGGAAAA ] [+] EMBL BM587007 [ AAAGAAGATCCGGCTGCTTGATATGAAAATGGACAGTCTGAAGCTTTCGAAGCAACGCATTGAAGTAACGAATCGACACATCTCCAACCTCGCTCCATAAACTACAGTGTACGCGTCGGTGGGGCGTATGTACGTGCTGAACGATGTTCCGACACTAACCGAACAGCTGAAAACGACCCATGCTTCCTACGAAGAAATAATTACTCAGTGTGAAGAGAACAAAGACTTCTTGATC AAAAATCTCCCGGAGCAGGAAGAGAGCCTTCGTGAGCTGGTGCAGCAGAAAAAGTCAGAAACAACCGAAACGAATGGAAAACCGGCGGAATAAACGCAATGCGTTGTGATTTACGTTAACAAGAACTACACTGCTTGCAGAATCACTGTTCTTTATTCAAGATGCTGTCCAAATCGAAATTAGCGTACGATCGAAACTCATTGCCTAAGTTACGTTCATGCTCTGGCCGAAATTCGCAC ] [-] EMBL BX618345 [ TGTTCTTTATTCAAGATGCTGTCCAAATCGAAATTAGCGTACGATCGAAACTCATTGCCTAAGTTACGTTCATGCTCTGGCCGAAATTCGCACATGCTAACACCGAAATGCTTCTTTGCCCAATCGTGCACTACGGCCCCAGAGCAAAGAACAATTTTGCCCTCCTGCTTGGTAATCTTTTTCACTATCACCCCCATCTTTTCAATACACTCTTCAGACAGGAACGGTGGGTCGGCGATTACCAGGTTGAATTGATGGGCATACGCGTCCATGTAGCCCGCATCAAATGCTCTATTGTAGTCATATTGCTGAAAGTTCTCTCCATAGGAAGCAAATCGTTCGTCAAATTCAAATAGCATAGCGTTCTTATTTTCCTTCACCACGTGCTTAAACGCAGACGGTGCAGATAGAAGCGCTACTTGAAACGTATCGGAAGGATTATTTTCTTGCAGATGTTTCACGATTAGTGCAAGTTTCTGTTTCGTTTCTTCGTTGTACCAAAATTGGCTTAGTTGCCAATTTTCTTCAAAGCATCCTGCCGACTCAGGTCCGGCTTCTTCAGAGCGCTCTTTTAAAGCCTTCTCTTGTAGGAACTGTTGCAAGATGAGCATCGTGTCTGCTGGTAAAACGC] consensusID : consensus_7448#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 759 fasta sequence [GGTATCTTGCACATGCAAAACAAACTTGTGAAAAAGCGGTAATAATCCTTTCCACCTACGAAAACCACGAAGTGCCGCTATTACCAACTCGTAAATATGGATCTGGAGCTCAAAAAGGCATTTACTGAAATGCAGGTGAACAAGATCGAGTCAACAAAGAAGATCCGGCTGCTTGATATGAAAATGGACAGTCTGAAGCTTTCGAAGCAACGCATTGAAGTAACGAATCGACACATCTCCAACCTCGGNTCCAGGAAACTAAGAGTGTAACGCGTCGAGTGGGGCGTATGTACGTGCCTGCAACCGATGTTCCGACACTAACCCGCAACCANGACTTGNACACAACCGAGCCCAATGCCTCTCCCTTAACGGAAAGGAAAAATAANANCTTTAACCTTCCCAGGTTGGTTGGCACANCACAGGAAACAACAGAACCTCATCCTATGGANTCCCNCNCCACACTTCTTCCCANACGGGNAGGACCACGGCGACACACGCAGGAGCCCTTCCGCCTGCACGCCCTAGCGNTGCCCCACGCGCCCACGCCACCCNCCATCAACCACGGTTTCCACACGACAANCAACCACACACACTCCCGGCAACGACNAACAGCCGGGAACANACTTGGCGGACANACAANAAACGCCCAGGGGTCNGGGCCAGTACTNAGCAACACCCGGGCCCGAAAACTNGCCGGCTAAAAGACAAGGAAAGTCAATATAAACCAGGGCTTTCACACACACCCCAGGGAACNCGCCG] [+] EMBL AL692149 [GGTATCTTGCACATGCAAAACAAACTTGTGAAAAAGCGGTAATAATCCTTTCCACCTACGAAAACCACGAAGTGCCGCTATTACCAACTCGTAAATATGGATCTGGAGCTCAAAAAGGCATTTACTGAAATGCAGGTGAACAAGATCGAGTCAACAAAGAAGATCCGGCTGCTTGATATGAAAATGGACAGTCTGAAGCTTTCGAAGCAACGCATTGAAGTAACGAATCGACACATCTCCAACCTCGGNTCCAGGAAACTAAGAGTGTAACGCGTCGAGTGGGGCGTATGTACGTGCCTGCAACCGATGTTCCGACACTAACCCGCAACCANGACTTGNACACAACCGAGCCCAATGCCTCTCCCTTAACGGAAAGGAAAAATAANANCTTTAACCTTCCCAGGTTGGTTGGCACANCACAGGAAACAACAGAACCTCATCCTATGGANTCCCNCNCCACACTTCTTCCCANACGGGNAGGACCACGGCGACACACGCAGGAGCCCTTCCGCCTGCACGCCCTAGCGNTGCCCCACGCGCCCACGCCACCCNCCATCAACCACGGTTTCCACACGACAANCAACCACACACACTCCCGGCAACGACNAACAGCCGGGAACANACTTGGCGGACANACAANAAACGCCCAGGGGTCNGGGCCAGTACTNAGCAACACCCGGGCCCGAAAACTNGCCGGCTAAAAGACAAGGAAAGTCAATATAAACCAGGGCTTTCACACACACCCCAGGGAACNCGCCG] consensusID : consensus_7448#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence [GAGTAGTTTATTGGTTTCCAAATTTCGCTCAATCGTGTTCGTCTTGCACATGCAAAAACAAATTGTGAAAAAGCGGTAAATAATCCTTTCCACCTACGAAAACCACGAAGTCCGCTATTACCAACTCGTAAATATGGATCTGGAGCTCAAAAAGGCATTTACTGAAATGCAGGTGAACAAGATCGAGTCAACAAAGAAGATCCGGCTGCTTGATATGAAAATGGACAGTCTGAAGCTTTCGAAGCAACGCATTGAAGTAACGAATCGACACATCTCCAACCTTGCTCCAGAAACTAGAGTGTACGCGTCGGTGGGGCGTATGTACGTGCTGAACGATGTTCCGACACTAACCGAACAGCTGAAAACGACCCATGCTTCCTACGAAGAAATAATTACTCAGTGTGAAAAGAACAAAGACTTCTTGATCAAAAATCTCAAGGAGCAGGAAGAGAGCCTTCGTGAGCTGGTGCAGCAGAAAAAGTCAGAAACAACCGAAACGAATGGAAAACCGGCGGAATAAACGCAATGCGTTGTGATTTACGTTAACAAGAAAAAAAAAAACAAAAAAAGGCCACATGTGCTCGGCTGCTGGTCCAT] [+] EMBL CNS08JR3 [GAGTAGTTTATTGGTTTCCAAATTTCGCTCAATCGTGTTCGTCTTGCACATGCAAAAACAAATTGTGAAAAAGCGGTAAATAATCCTTTCCACCTACGAAAACCACGAAGTCCGCTATTACCAACTCGTAAATATGGATCTGGAGCTCAAAAAGGCATTTACTGAAATGCAGGTGAACAAGATCGAGTCAACAAAGAAGATCCGGCTGCTTGATATGAAAATGGACAGTCTGAAGCTTTCGAAGCAACGCATTGAAGTAACGAATCGACACATCTCCAACCTTGCTCCAGAAACTAGAGTGTACGCGTCGGTGGGGCGTATGTACGTGCTGAACGATGTTCCGACACTAACCGAACAGCTGAAAACGACCCATGCTTCCTACGAAGAAATAATTACTCAGTGTGAAAAGAACAAAGACTTCTTGATCAAAAATCTCAAGGAGCAGGAAGAGAGCCTTCGTGAGCTGGTGCAGCAGAAAAAGTCAGAAACAACCGAAACGAATGGAAAACCGGCGGAATAAACGCAATGCGTTGTGATTTACGTTAACAAGAAAAAAAAAAACAAAAAAAGGCCACATGTGCTCGGCTGCTGGTCCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7448#0 GGGGGGAGGCTGCGGAATTCCTCGAGAACTGTTGGCCTACTGGAAATTGGTTTCCCAAAT 60 consensus_7448#2 ------------------------------------GAGTAGTTTATTGGTTTCC-AAAT 23 consensus_7448#1 ------------------------------------------------------------ consensus_7448#0 TTCGCTCAATTGTGTTCGTCTTGCACATGCAAAAACAAATTGTGAAAAAGCGGTAAATAA 120 consensus_7448#2 TTCGCTCAATCGTGTTCGTCTTGCACATGCAAAAACAAATTGTGAAAAAGCGGTAAATAA 83 consensus_7448#1 --------------GGTATCTTGCACATGCAAAACAAACTTGTGAAAAAGCGGTAA-TAA 45 **************** ** ***************** *** consensus_7448#0 TCCTTTCCACCTACGAAAACCACGAAGTGCCGCTATTACCAACTCGTAAATATGGATCTG 180 consensus_7448#2 TCCTTTCCACCTACGAAAACCACGAAGT-CCGCTATTACCAACTCGTAAATATGGATCTG 142 consensus_7448#1 TCCTTTCCACCTACGAAAACCACGAAGTGCCGCTATTACCAACTCGTAAATATGGATCTG 105 **************************** ******************************* consensus_7448#0 GAGCTCAAAAAGGCATTTACTGAAATGCAGGTGAACAAGATCGAGTCAACAAAGAAGATC 240 consensus_7448#2 GAGCTCAAAAAGGCATTTACTGAAATGCAGGTGAACAAGATCGAGTCAACAAAGAAGATC 202 consensus_7448#1 GAGCTCAAAAAGGCATTTACTGAAATGCAGGTGAACAAGATCGAGTCAACAAAGAAGATC 165 ************************************************************ consensus_7448#0 CGGCTGCTTGATATGAAAATGGACAGTCTGAAGCTTTCGAAGCAACGCATTGAAGTAACG 300 consensus_7448#2 CGGCTGCTTGATATGAAAATGGACAGTCTGAAGCTTTCGAAGCAACGCATTGAAGTAACG 262 consensus_7448#1 CGGCTGCTTGATATGAAAATGGACAGTCTGAAGCTTTCGAAGCAACGCATTGAAGTAACG 225 ************************************************************ consensus_7448#0 AATCGACACATCTCCAACCTCG-CTCCAG-AAACTA-GAGTGTA-CGCGTCG-GTGGGGC 355 consensus_7448#2 AATCGACACATCTCCAACCTTG-CTCCAG-AAACTA-GAGTGTA-CGCGTCG-GTGGGGC 317 consensus_7448#1 AATCGACACATCTCCAACCTCGGNTCCAGGAAACTAAGAGTGTAACGCGTCGAGTGGGGC 285 ******************** * ***** ****** ******* ******* ******* consensus_7448#0 GTATGTACGTGCT---GAACGATGTTCCGACACTAACCGAACAGCTGAAAACGACCCATG 412 consensus_7448#2 GTATGTACGTGCT---GAACGATGTTCCGACACTAACCGAACAGCTGAAAACGACCCATG 374 consensus_7448#1 GTATGTACGTGCCTGCAACCGATGTTCCGACACTAACCCG-CAACCANGACTTGNACACA 344 ************ * ******************* ** * * ** consensus_7448#0 CTTCCTACGAAGAAATAATTACTCAGTGTGAAAAGAACAAAGACTTCTTGA---TCAAAA 469 consensus_7448#2 CTTCCTACGAAGAAATAATTACTCAGTGTGAAAAGAACAAAGACTTCTTGA---TCAAAA 431 consensus_7448#1 AC-CGAGCCCAATGCCTCTCCCTTAACGGAAAGGAAAAATAANANCTTTAACCTTCCCAG 403 * * * * ** * * ** ** * * ** * ** * consensus_7448#0 ATCTCAAGGAGCAGGAAGAGAGCCTTCGTGAGCTGGTGCAGCAGAAAAAGTCAGAAA--- 526 consensus_7448#2 ATCTCAAGGAGCAGGAAGAGAGCCTTCGTGAGCTGGTGCAGCAGAAAAAGTCAGAAA--- 488 consensus_7448#1 GTTGGTTGGCACANCACAGGAAACAACAGAACCTCATCCTATGGANTCCCNCNCCACACT 463 * ** ** * ** * * * ** * * ** * * consensus_7448#0 -CAACCGAAACGAATGGAAAACCGGCGGAATAAACGCAATGCGTTGTGATTTACGTTAAC 585 consensus_7448#2 -CAACCGAAACGAATGGAAAACCGGCGGAATAAACGCAATGCGTTGTGATTTACGTTAAC 547 consensus_7448#1 TCTTCCCANACGGGNAGGACCACGGCGACACACGCAGGA-GCCCTTCCGCCTGCACGCCC 522 * ** * *** * * ***** * * * * ** * * * * consensus_7448#0 AAGAACTACACTGCTTGCAGA-ATCACTGTTCTTTATTCAAGATGCTGTCCAAATCGAAA 644 consensus_7448#2 AAGAAAAAAAAAA---ACAAA-AAAAGGCCACATGTGCTCGGCTGCTGGTCCAT------ 597 consensus_7448#1 TAGCGNTGCCCCACGCGCCCACGCCACCCNCCATCAACCACGGTTTCCACACGACAANCA 582 ** * * * * * * * consensus_7448#0 TTAGCGTACGATCGAAACTCATTGCCTAAGTTACGTTCATGCTCTGGCCGAAATTCGCAC 704 consensus_7448#2 ------------------------------------------------------------ consensus_7448#1 ACCACACACACTCCCGG--CAACGACNAACAGCCGGGAACANACTTGGCGGA---CANAC 637 consensus_7448#0 ATGCTAACACCGAAATGCTTCTTTGCCCAATCGTGCACTACGGCCCCAGAGCAAAGAACA 764 consensus_7448#2 ------------------------------------------------------------ consensus_7448#1 A-ANAAACGCCCAGGGGTCN---GGGCCAGTACTNAGCAACA--CCCGGGCCCGAAAAC- 690 consensus_7448#0 ATTTTGCCCTCCTGCTTGGTAATCTTTTTCACTATCACCCCCATCTTTTCAATACACTCT 824 consensus_7448#2 ------------------------------------------------------------ consensus_7448#1 ----TNGCCGGCTAAAAGACAAGGAAAGTCAATATAAACCAGGGCTTTCACACACACCCC 746 consensus_7448#0 TCAGACAGGAACGGTGGGTCGGCGATTACCAGGTTGAATTGATGGGCATACGCGTCCATG 884 consensus_7448#2 ------------------------------------------------------------ consensus_7448#1 AGGGAACNCGCCG----------------------------------------------- 759 consensus_7448#0 TAGCCCGCATCAAATGCTCTATTGTAGTCATATTGCTGAAAGTTCTCTCCATAGGAAGCA 944 consensus_7448#2 ------------------------------------------------------------ consensus_7448#1 ------------------------------------------------------------ consensus_7448#0 AATCGTTCGTCAAATTCAAATAGCATAGCGTTCTTATTTTCCTTCACCACGTGCTTAAAC 1004 consensus_7448#2 ------------------------------------------------------------ consensus_7448#1 ------------------------------------------------------------ consensus_7448#0 GCAGACGGTGCAGATAGAAGCGCTACTTGAAACGTATCGGAAGGATTATTTTCTTGCAGA 1064 consensus_7448#2 ------------------------------------------------------------ consensus_7448#1 ------------------------------------------------------------ consensus_7448#0 TGTTTCACGATTAGTGCAAGTTTCTGTTTCGTTTCTTCGTTGTACCAAAATTGGCTTAGT 1124 consensus_7448#2 ------------------------------------------------------------ consensus_7448#1 ------------------------------------------------------------ consensus_7448#0 TGCCAATTTTCTTCAAAGCATCCTGCCGACTCAGGTCCGGCTTCTTCAGAGCGCTCTTTT 1184 consensus_7448#2 ------------------------------------------------------------ consensus_7448#1 ------------------------------------------------------------ consensus_7448#0 AAAGCCTTCTCTTGTAGGAACTGTTGCAAGATGAGCATCGTGTCTGCTGGTAAAACGC 1242 consensus_7448#2 ---------------------------------------------------------- consensus_7448#1 ---------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||