These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7453#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 786 fasta sequence [GGCCGTTGCCTCAGTTGCGATTAGGTTCTTTCCGTGTGCTCCGGACGCAGACGCGCTTCTTTGCGGTATGGATTTCTATCACCTTCCCCTGTCGGCCCCGTGCCAATCGATCCGTCTGTTGGCCAAAGCGCTCGGTCTACATTTGAACCTAAAGGAGGTCGACCTGTTGAAAGGTGAACATCTTAAACCGGAGTTCCTGAAGATCAACCCACAACACACCGTACCGACGCTGGTCGACAATGACTTTGTGCTGTGGGAATCGAGAGCGATCCTGACGTACCTGTGCGAAAAGTACGGCAAAAACGACGGCCTCTATCCGAAGGATCCGAAAAAGCGTGCCGTCGTGAACCAGCGCCTGTACTTCGACATGGGCACGCTGTACCAGCGGTTCTCGCAAGCCTTCTACCCGGTCATGATGGAGGGCAAGGAGCTGAACCCCGAACTGGTGGTGAAGCTAGACGAAGCGCTCGAGTTTTTGGAAAGCTTCC-TCGACAAAACACCCTTCGCTGCGGGCGATAAGCTAACGGTTGCCGATTTCAGTCTGCTGACGAGCATCACTACCATCGACGTGACGGCCGGGCACGATCTCAGCAAGTACGCCAACATTCAGCGTTGGTACAGCCAGCTGAAGGAGTCGGTGGCGGGACATCAGGACATTTGCGTCGAAGGTGCCATCCAGTTCCGTGACTCGTTCAACCCGATCAACAAGTAAACCAAAAAAAAAAAAGAAACAATGCCATCCATCGCAAACGGTACAATAAACAACAACGTGGATGCGAAAAAAAA] [+] EMBL BX629061 [GGCCGTTGCCTCAGTTGCGATTAGGTTCTTTCCGTGTGCTCCGGACGCAGACGCGCTTCTTTGCGGTATGGATTTCTATCACCTTCCCCTGTCGGCCCCGTGCCAATCGATCCGTCTGTTGGCCAAAGCGCTCGGTCTACATTTGAACCTAAAGGAGGTCGACCTGTTGAAAGGTGAACATCTTAAACCGGAGTTCCTGAAGATCAACCCACAACACACCGTACCGACGCT T GACAATGACTTTGTGCTGTGGGAATCGAGAGCGATCCTGACGTACCTGTGCGAAAAGTACGGCAAAAACGACGGCCTCTATCCGAAGGATCCGAAAAAGCGTGCCGTCGTGAACCAGCGCCTGTACTTCGACATGGGCACGCTGTACCAGCGGTTCTCGCAAGCCTTCTACCCGGTCATGATGGAGGGCAAGGAGCTGAACCCCGAACTGGTGGTGAAGCTAGACGAAGCGCTCGAGTTTTTGGAAAGCTTCC TCGACAAAACACCCTTCGCTGCGGGCGATAAGCTAACGGTTGCCGATTTCAGTCTGCTGACGAGCATCACTACCATCGACGTGACGGCCGGGCACGATCTCAGCAAGTACGCCAACATTCAGCGTTGGTACATCCAGCTGAAGGAGTCGGTGGCGGGACATCAGGACATTTGCGTCGAAGGTGCCATCCAGTTCCGTGACTCGTTCAACC ] [+] EMBL BM600115 [ ccgCCGTGTGCTCCGGACGCAGACGCGCTTCTTTGCGGTATGGATTTCTATCACCTTCCCCTGTCGGCCCCGTGCCAATCGATCCGTCTGTTGGCCAAAGCGCTCGGTCTACATTTGAACCTAAAGGAGGTCGACCTGTTGAAAGGTGAACATCTTAAACCGGAGTTCCTGAAGATCAACCCACAACACACCGTACCGACGCTGGTCGACAATGACTTTGTGCTGTGGGAATCGAGAGCGATCCTGACGTACCTGTGCGAAAAGTACGGCAAAAACGACGGCCTCTATCCGAAGGATCCGAAAAAGCGTGCCGTCGTGAACCAGCGCCTGTACTTCGACATGGGCACGCTGTACCAGCGGTTCTCGCAAGCCTTCTACCCGGTCATGATGGAGGGCAAGGAGCTGAACCCCGAACTGGTGGTGAAGCTAGACGAAGCGCTCGAGTTTTTGGAAAGCTTCC TCGACAAAACACCCTTCGCTGCGGGCGATAAGCTAACGGTTGCCGATTTCAGTCTGCTGACGAGCATCACTACCATCGACGTGACGGCCGGGCACGATCTCAGCAAGTACGCCAACATTCAGCGTTGGTACAGCCAGCTGAAGGAGTCGGTGGCGGGACATCAGGA ] [+] EMBL AF513637 [ TATCACCTTCCCCTGTCGGCCCCGTGCCAATCGATCCGTCTGTTGGCCAAAGCGCTCGGTCTACATTTGAACCTAAAGGAGGTCGACCTGTTGAAAGGCGAACACCTGAAACCGGAGTTCCTGAAGATCAACCCACAACACACCGTACCGACGCTGGTCGACAATGACTTTGTGCTGTGGGAATCGAGAGCGATCCTGACGTACCTGTGCGAAAAGTACGGCAAAAACGACGGCCTCTATCCGAAGGATCCGAAAAAGCGTGCCGTCGTGAACCAGCGCCTGTACTTCGACATGGGCACGCTGTACCAGCGGTTCTCGCAAGCCTTCTACCCGGTCATGATGGAGGGCAAGGAGCTGAACCCCGAACTGGTGGTGAAGCTAGACGAAGCGCTCGAGTTTTTGGAAAGCTTCC TCGACAAAACACCCTTCGCTGCGGGCGATAAGCTAACGGTTGCCGATTTCAGTCTGCTGACGAGCATCACTACCATCGACGTGACGGCCGGGCACGATCTCAGCAAGTACGCCAACATTCAGCGTTGGTACAGCCAGCTGCAGGAGTCGGTGGCGGGACATCAGGACATTTGCGTCGAAGGTGCCATCCAGTTCCGTGACTCGTTCAACCCGAT ] [-] EMBL AGA283683 [ TGATGGAGGGCAAGGAGCTGAACCCCGAACTGGTGGTGAAGCTAGACGAAGCGCTCGAGTTTTTGGAAAGCTTCCTTCGACAAAACACCCTTCGCTGCGGGCGATAAGCTAACGGTTGCCGATTTCAGTCTGCTGACGAGCATCACAACCATCGACGTGACGGCCGGGCACGATCTCAGCAAGTACGCCAACATTCAGCGTTGGTACAGCCAGCTGAAGGAGTCGGTGGCGGGACATCAGGACATTTGCGTCGAAGGTGCCATCCAGTTCCGTGACTCGTTCAACCCGATCAACAAGTAAACCAAAAAAAAAAAAGAAACAATGCCATCCATCGCAAACGGTACAATAAACAACAACGTGGATGCGAAAAAAAA] consensusID : consensus_7453#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 626 fasta sequence [CCGCGGACGCGTGGGGTTCTTTCCGTGTGCTCCGGACGCAGACGCGCTTCTTTGCGGTATGGATTTCTATCACCTTCCCCTGTCGGCCCCGTGCCAATCGATCCGTCTGTTGGCCAAAGCGCTCGGTCTACATTTGAACCTAAAGGAGGTCGACCTGTTGAAAGGTGAACATCTTAAACCGGAGTTCCTGAAGATCAACCCACAACACACCGTACCGACGCTGGTCGACAATGACTTTGTGCTGTGGGAATCGAGAGCGATCCTGACGTACCTGTGCGAAAAGTACGGCAAAAACGACGGCCTCTATCCGAAGGATCCGAAAAAGCGTGCCGTCGTGAACCAGCGCCTGTACTTCGACATGGGCACGCTGTACCAGCGGTTCTCGCAAGCCTTCTACCCGGTCATGATGGAGGGCAAGGAGCTGAACCCCGAACTGGTGGTGAAGCTAGACGAAGCGCTCGAGTTTTTGGAAAGCTTCCTCGACAAAACACCCTTCGCTGCGGGCGATAAGCTAACGGTTGCCGATTTCAGTCTGCTGACGAGCATCACTACCATCGACGTGACGGCCGGGCACGATCTCAGCAAGTACGCCAACATTCAGCGTTGGTACAGCCAGCTGAAGGAGT] [+] EMBL BM613630 [CCGCGGACGCGTGGGGTTCTTTCCGTGTGCTCCGGACGCAGACGCGCTTCTTTGCGGTATGGATTTCTATCACCTTCCCCTGTCGGCCCCGTGCCAATCGATCCGTCTGTTGGCCAAAGCGCTCGGTCTACATTTGAACCTAAAGGAGGTCGACCTGTTGAAAGGTGAACATCTTAAACCGGAGTTCCTGAAGATCAACCCACAACACACCGTACCGACGCTGGTCGACAATGACTTTGTGCTGTGGGAATCGAGAGCGATCCTGACGTACCTGTGCGAAAAGTACGGCAAAAACGACGGCCTCTATCCGAAGGATCCGAAAAAGCGTGCCGTCGTGAACCAGCGCCTGTACTTCGACATGGGCACGCTGTACCAGCGGTTCTCGCAAGCCTTCTACCCGGTCATGATGGAGGGCAAGGAGCTGAACCCCGAACTGGTGGTGAAGCTAGACGAAGCGCTCGAGTTTTTGGAAAGCTTCCTCGACAAAACACCCTTCGCTGCGGGCGATAAGCTAACGGTTGCCGATTTCAGTCTGCTGACGAGCATCACTACCATCGACGTGACGGCCGGGCACGATCTCAGCAAGTACGCCAACATTCAGCGTTGGTACAGCCAGCTGAAGGAGT] [+] EMBL AGA284972 [ GAAAGGTGAACATCTTAAACCGGAGTTCCTGAAGATCAACCCACAACACACCGTCCCGACGCTGGTCGACAATGACTTTGTGCTGTGGGAATCGAGAGCGATCCTGACGTACCTGTGCGAAAAGTACGGCAAAAACGACGGCCTCTATCCGAAGGATCCGAAAAAGCGTGCCGTCGTGAACCAGCGCCTGTACTTCGACATGGGCACGCTGTACCAGCGGTTCTCGCAAGCCTTCTACCCGGTCATGATGGAGGGCAAGGAGCTGAACCCCGAACTGGTGGTGAAGCTAGACGAAGCGCTCGAGTTTTTGGAAAGCTTCCTCGACAAAACACCCTTCGCTGCGGGCGATAAGCTAACGGTTGCCGATTTCAGTCTGCTGACGAGCATCACAACCATCGACGTGACGGCCGGGCACGATC ] consensusID : consensus_7453#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 339 fasta sequence [AAGGCAGAATCCGCACGANTGTATCTTTCCTGTGTGCTCCGGNCGCAGACGCGCTTCTTCGCGGTATGGATTTCTATCACCTTACCCCTGGTCGGCCCCGTGCCAATCGATCCGTCTGTATGGCCAAAGCTGCTCGGTCTACATTTGAACCTAAAGGAGGTCGACCGTGTTGAAAGGCGAACACCGTGAAACCGGAGTTCCTGAAGATCAAGCNCCACAACACACCGTACCGACGCTGGTCGACAATGACTTTGTGCTGTGGGAAGTCGAGAGCGATCCTGACGTACCTGTGCGAAGAAGTACGGCGAAAAAGCGACGGNCGTCGTANTCCGAAGGAGT] [+] EMBL BX468005 [AAGGCAGAATCCGCACGANTGTATCTTTCCTGTGTGCTCCGGNCGCAGACGCGCTTCTTCGCGGTATGGATTTCTATCACCTTACCCCTGGTCGGCCCCGTGCCAATCGATCCGTCTGTATGGCCAAAGCTGCTCGGTCTACATTTGAACCTAAAGGAGGTCGACCGTGTTGAAAGGCGAACACCGTGAAACCGGAGTTCCTGAAGATCAAGCNCCACAACACACCGTACCGACGCTGGTCGACAATGACTTTGTGCTGTGGGAAGTCGAGAGCGATCCTGACGTACCTGTGCGAAGAAGTACGGCGAAAAAGCGACGGNCGTCGTANTCCGAAGGAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7453#0 GGCCGTTGCCTCAGTTGCGATTAGGTTCTTTCCGTGTGCTCCGGACGCAGACGCGCTTCT 60 consensus_7453#1 --------CCGCGGACGCG-TGGGGTTCTTTCCGTGTGCTCCGGACGCAGACGCGCTTCT 51 consensus_7453#2 --AAGGCAGAATCCGCACGANTGTATCTTTCCTGTGTGCTCCGGNCGCAGACGCGCTTCT 58 ** * ** * *********** *************** consensus_7453#0 TTGCGGTATGGATTTCTATCACCTTCCCCT--GTCGGCCCCGTGCCAATCGATCCGTCTG 118 consensus_7453#1 TTGCGGTATGGATTTCTATCACCTTCCCCT--GTCGGCCCCGTGCCAATCGATCCGTCTG 109 consensus_7453#2 TCGCGGTATGGATTTCTATCACCTTACCCCTGGTCGGCCCCGTGCCAATCGATCCGTCTG 118 * *********************** *** **************************** consensus_7453#0 T-TGGCCAAAGC-GCTCGGTCTACATTTGAACCTAAAGGAGGTCGACC-TGTTGAAAGGT 175 consensus_7453#1 T-TGGCCAAAGC-GCTCGGTCTACATTTGAACCTAAAGGAGGTCGACC-TGTTGAAAGGT 166 consensus_7453#2 TATGGCCAAAGCTGCTCGGTCTACATTTGAACCTAAAGGAGGTCGACCGTGTTGAAAGGC 178 * ********** *********************************** ********** consensus_7453#0 GAACATCTT-AAACCGGAGTTCCTGAAGATCAA--CCCACAACACACCGTACCGACGCTG 232 consensus_7453#1 GAACATCTT-AAACCGGAGTTCCTGAAGATCAA--CCCACAACACACCGTACCGACGCTG 223 consensus_7453#2 GAACACCGTGAAACCGGAGTTCCTGAAGATCAAGCNCCACAACACACCGTACCGACGCTG 238 ***** * * *********************** ************************ consensus_7453#0 GTCGACAATGACTTTGTGCTGTGGGAA-TCGAGAGCGATCCTGACGTACCTGTGCGAA-A 290 consensus_7453#1 GTCGACAATGACTTTGTGCTGTGGGAA-TCGAGAGCGATCCTGACGTACCTGTGCGAA-A 281 consensus_7453#2 GTCGACAATGACTTTGTGCTGTGGGAAGTCGAGAGCGATCCTGACGTACCTGTGCGAAGA 298 *************************** ****************************** * consensus_7453#0 AGTACGGCAAAAA--CGACGGCCTCTATCCGAAGGATCCGAAAAAGCGTGCCGTCGTGAA 348 consensus_7453#1 AGTACGGCAAAAA--CGACGGCCTCTATCCGAAGGATCCGAAAAAGCGTGCCGTCGTGAA 339 consensus_7453#2 AGTACGGCGAAAAAGCGACGGNCGTCGT------ANTCCGAAGGAGT------------- 339 ******** **** ****** * * ****** ** consensus_7453#0 CCAGCGCCTGTACTTCGACATGGGCACGCTGTACCAGCGGTTCTCGCAAGCCTTCTACCC 408 consensus_7453#1 CCAGCGCCTGTACTTCGACATGGGCACGCTGTACCAGCGGTTCTCGCAAGCCTTCTACCC 399 consensus_7453#2 ------------------------------------------------------------ consensus_7453#0 GGTCATGATGGAGGGCAAGGAGCTGAACCCCGAACTGGTGGTGAAGCTAGACGAAGCGCT 468 consensus_7453#1 GGTCATGATGGAGGGCAAGGAGCTGAACCCCGAACTGGTGGTGAAGCTAGACGAAGCGCT 459 consensus_7453#2 ------------------------------------------------------------ consensus_7453#0 CGAGTTTTTGGAAAGCTTCCTCGACAAAACACCCTTCGCTGCGGGCGATAAGCTAACGGT 528 consensus_7453#1 CGAGTTTTTGGAAAGCTTCCTCGACAAAACACCCTTCGCTGCGGGCGATAAGCTAACGGT 519 consensus_7453#2 ------------------------------------------------------------ consensus_7453#0 TGCCGATTTCAGTCTGCTGACGAGCATCACTACCATCGACGTGACGGCCGGGCACGATCT 588 consensus_7453#1 TGCCGATTTCAGTCTGCTGACGAGCATCACTACCATCGACGTGACGGCCGGGCACGATCT 579 consensus_7453#2 ------------------------------------------------------------ consensus_7453#0 CAGCAAGTACGCCAACATTCAGCGTTGGTACAGCCAGCTGAAGGAGTCGGTGGCGGGACA 648 consensus_7453#1 CAGCAAGTACGCCAACATTCAGCGTTGGTACAGCCAGCTGAAGGAGT------------- 626 consensus_7453#2 ------------------------------------------------------------ consensus_7453#0 TCAGGACATTTGCGTCGAAGGTGCCATCCAGTTCCGTGACTCGTTCAACCCGATCAACAA 708 consensus_7453#1 ------------------------------------------------------------ consensus_7453#2 ------------------------------------------------------------ consensus_7453#0 GTAAACCAAAAAAAAAAAAGAAACAATGCCATCCATCGCAAACGGTACAATAAACAACAA 768 consensus_7453#1 ------------------------------------------------------------ consensus_7453#2 ------------------------------------------------------------ consensus_7453#0 CGTGGATGCGAAAAAAAA 786 consensus_7453#1 ------------------ consensus_7453#2 ------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||