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Anopheles gambiae
cluster # 7453 cluster # 7453       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7453#0 length = 786 sequences # 4  
consensus_7453#1 length = 626 sequences # 2  
consensus_7453#2 length = 339 sequences # 1  

consensusID : consensus_7453#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 786
fasta sequence
                              [GGCCGTTGCCTCAGTTGCGATTAGGTTCTTTCCGTGTGCTCCGGACGCAGACGCGCTTCTTTGCGGTATGGATTTCTATCACCTTCCCCTGTCGGCCCCGTGCCAATCGATCCGTCTGTTGGCCAAAGCGCTCGGTCTACATTTGAACCTAAAGGAGGTCGACCTGTTGAAAGGTGAACATCTTAAACCGGAGTTCCTGAAGATCAACCCACAACACACCGTACCGACGCTGGTCGACAATGACTTTGTGCTGTGGGAATCGAGAGCGATCCTGACGTACCTGTGCGAAAAGTACGGCAAAAACGACGGCCTCTATCCGAAGGATCCGAAAAAGCGTGCCGTCGTGAACCAGCGCCTGTACTTCGACATGGGCACGCTGTACCAGCGGTTCTCGCAAGCCTTCTACCCGGTCATGATGGAGGGCAAGGAGCTGAACCCCGAACTGGTGGTGAAGCTAGACGAAGCGCTCGAGTTTTTGGAAAGCTTCC-TCGACAAAACACCCTTCGCTGCGGGCGATAAGCTAACGGTTGCCGATTTCAGTCTGCTGACGAGCATCACTACCATCGACGTGACGGCCGGGCACGATCTCAGCAAGTACGCCAACATTCAGCGTTGGTACAGCCAGCTGAAGGAGTCGGTGGCGGGACATCAGGACATTTGCGTCGAAGGTGCCATCCAGTTCCGTGACTCGTTCAACCCGATCAACAAGTAAACCAAAAAAAAAAAAGAAACAATGCCATCCATCGCAAACGGTACAATAAACAACAACGTGGATGCGAAAAAAAA]

[+] EMBL BX629061             [GGCCGTTGCCTCAGTTGCGATTAGGTTCTTTCCGTGTGCTCCGGACGCAGACGCGCTTCTTTGCGGTATGGATTTCTATCACCTTCCCCTGTCGGCCCCGTGCCAATCGATCCGTCTGTTGGCCAAAGCGCTCGGTCTACATTTGAACCTAAAGGAGGTCGACCTGTTGAAAGGTGAACATCTTAAACCGGAGTTCCTGAAGATCAACCCACAACACACCGTACCGACGCT  T GACAATGACTTTGTGCTGTGGGAATCGAGAGCGATCCTGACGTACCTGTGCGAAAAGTACGGCAAAAACGACGGCCTCTATCCGAAGGATCCGAAAAAGCGTGCCGTCGTGAACCAGCGCCTGTACTTCGACATGGGCACGCTGTACCAGCGGTTCTCGCAAGCCTTCTACCCGGTCATGATGGAGGGCAAGGAGCTGAACCCCGAACTGGTGGTGAAGCTAGACGAAGCGCTCGAGTTTTTGGAAAGCTTCC TCGACAAAACACCCTTCGCTGCGGGCGATAAGCTAACGGTTGCCGATTTCAGTCTGCTGACGAGCATCACTACCATCGACGTGACGGCCGGGCACGATCTCAGCAAGTACGCCAACATTCAGCGTTGGTACATCCAGCTGAAGGAGTCGGTGGCGGGACATCAGGACATTTGCGTCGAAGGTGCCATCCAGTTCCGTGACTCGTTCAACC                                                                                        ]
[+] EMBL BM600115             [                            ccgCCGTGTGCTCCGGACGCAGACGCGCTTCTTTGCGGTATGGATTTCTATCACCTTCCCCTGTCGGCCCCGTGCCAATCGATCCGTCTGTTGGCCAAAGCGCTCGGTCTACATTTGAACCTAAAGGAGGTCGACCTGTTGAAAGGTGAACATCTTAAACCGGAGTTCCTGAAGATCAACCCACAACACACCGTACCGACGCTGGTCGACAATGACTTTGTGCTGTGGGAATCGAGAGCGATCCTGACGTACCTGTGCGAAAAGTACGGCAAAAACGACGGCCTCTATCCGAAGGATCCGAAAAAGCGTGCCGTCGTGAACCAGCGCCTGTACTTCGACATGGGCACGCTGTACCAGCGGTTCTCGCAAGCCTTCTACCCGGTCATGATGGAGGGCAAGGAGCTGAACCCCGAACTGGTGGTGAAGCTAGACGAAGCGCTCGAGTTTTTGGAAAGCTTCC TCGACAAAACACCCTTCGCTGCGGGCGATAAGCTAACGGTTGCCGATTTCAGTCTGCTGACGAGCATCACTACCATCGACGTGACGGCCGGGCACGATCTCAGCAAGTACGCCAACATTCAGCGTTGGTACAGCCAGCTGAAGGAGTCGGTGGCGGGACATCAGGA                                                                                                                                    ]
[+] EMBL AF513637             [                                                                            TATCACCTTCCCCTGTCGGCCCCGTGCCAATCGATCCGTCTGTTGGCCAAAGCGCTCGGTCTACATTTGAACCTAAAGGAGGTCGACCTGTTGAAAGGCGAACACCTGAAACCGGAGTTCCTGAAGATCAACCCACAACACACCGTACCGACGCTGGTCGACAATGACTTTGTGCTGTGGGAATCGAGAGCGATCCTGACGTACCTGTGCGAAAAGTACGGCAAAAACGACGGCCTCTATCCGAAGGATCCGAAAAAGCGTGCCGTCGTGAACCAGCGCCTGTACTTCGACATGGGCACGCTGTACCAGCGGTTCTCGCAAGCCTTCTACCCGGTCATGATGGAGGGCAAGGAGCTGAACCCCGAACTGGTGGTGAAGCTAGACGAAGCGCTCGAGTTTTTGGAAAGCTTCC TCGACAAAACACCCTTCGCTGCGGGCGATAAGCTAACGGTTGCCGATTTCAGTCTGCTGACGAGCATCACTACCATCGACGTGACGGCCGGGCACGATCTCAGCAAGTACGCCAACATTCAGCGTTGGTACAGCCAGCTGCAGGAGTCGGTGGCGGGACATCAGGACATTTGCGTCGAAGGTGCCATCCAGTTCCGTGACTCGTTCAACCCGAT                                                                                    ]
[-] EMBL AGA283683            [                                                                                                                                                                                                                                                                                                                                                                                                                             TGATGGAGGGCAAGGAGCTGAACCCCGAACTGGTGGTGAAGCTAGACGAAGCGCTCGAGTTTTTGGAAAGCTTCCTTCGACAAAACACCCTTCGCTGCGGGCGATAAGCTAACGGTTGCCGATTTCAGTCTGCTGACGAGCATCACAACCATCGACGTGACGGCCGGGCACGATCTCAGCAAGTACGCCAACATTCAGCGTTGGTACAGCCAGCTGAAGGAGTCGGTGGCGGGACATCAGGACATTTGCGTCGAAGGTGCCATCCAGTTCCGTGACTCGTTCAACCCGATCAACAAGTAAACCAAAAAAAAAAAAGAAACAATGCCATCCATCGCAAACGGTACAATAAACAACAACGTGGATGCGAAAAAAAA]


>consensus_7453#0 GGCCGTTGCCTCAGTTGCGATTAGGTTCTTTCCGTGTGCTCCGGACGCAGACGCGCTTCT TTGCGGTATGGATTTCTATCACCTTCCCCTGTCGGCCCCGTGCCAATCGATCCGTCTGTT GGCCAAAGCGCTCGGTCTACATTTGAACCTAAAGGAGGTCGACCTGTTGAAAGGTGAACA TCTTAAACCGGAGTTCCTGAAGATCAACCCACAACACACCGTACCGACGCTGGTCGACAA TGACTTTGTGCTGTGGGAATCGAGAGCGATCCTGACGTACCTGTGCGAAAAGTACGGCAA AAACGACGGCCTCTATCCGAAGGATCCGAAAAAGCGTGCCGTCGTGAACCAGCGCCTGTA CTTCGACATGGGCACGCTGTACCAGCGGTTCTCGCAAGCCTTCTACCCGGTCATGATGGA GGGCAAGGAGCTGAACCCCGAACTGGTGGTGAAGCTAGACGAAGCGCTCGAGTTTTTGGA AAGCTTCCTCGACAAAACACCCTTCGCTGCGGGCGATAAGCTAACGGTTGCCGATTTCAG TCTGCTGACGAGCATCACTACCATCGACGTGACGGCCGGGCACGATCTCAGCAAGTACGC CAACATTCAGCGTTGGTACAGCCAGCTGAAGGAGTCGGTGGCGGGACATCAGGACATTTG CGTCGAAGGTGCCATCCAGTTCCGTGACTCGTTCAACCCGATCAACAAGTAAACCAAAAA AAAAAAAGAAACAATGCCATCCATCGCAAACGGTACAATAAACAACAACGTGGATGCGAA AAAAAA



consensusID : consensus_7453#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 626
fasta sequence
                              [CCGCGGACGCGTGGGGTTCTTTCCGTGTGCTCCGGACGCAGACGCGCTTCTTTGCGGTATGGATTTCTATCACCTTCCCCTGTCGGCCCCGTGCCAATCGATCCGTCTGTTGGCCAAAGCGCTCGGTCTACATTTGAACCTAAAGGAGGTCGACCTGTTGAAAGGTGAACATCTTAAACCGGAGTTCCTGAAGATCAACCCACAACACACCGTACCGACGCTGGTCGACAATGACTTTGTGCTGTGGGAATCGAGAGCGATCCTGACGTACCTGTGCGAAAAGTACGGCAAAAACGACGGCCTCTATCCGAAGGATCCGAAAAAGCGTGCCGTCGTGAACCAGCGCCTGTACTTCGACATGGGCACGCTGTACCAGCGGTTCTCGCAAGCCTTCTACCCGGTCATGATGGAGGGCAAGGAGCTGAACCCCGAACTGGTGGTGAAGCTAGACGAAGCGCTCGAGTTTTTGGAAAGCTTCCTCGACAAAACACCCTTCGCTGCGGGCGATAAGCTAACGGTTGCCGATTTCAGTCTGCTGACGAGCATCACTACCATCGACGTGACGGCCGGGCACGATCTCAGCAAGTACGCCAACATTCAGCGTTGGTACAGCCAGCTGAAGGAGT]

[+] EMBL BM613630             [CCGCGGACGCGTGGGGTTCTTTCCGTGTGCTCCGGACGCAGACGCGCTTCTTTGCGGTATGGATTTCTATCACCTTCCCCTGTCGGCCCCGTGCCAATCGATCCGTCTGTTGGCCAAAGCGCTCGGTCTACATTTGAACCTAAAGGAGGTCGACCTGTTGAAAGGTGAACATCTTAAACCGGAGTTCCTGAAGATCAACCCACAACACACCGTACCGACGCTGGTCGACAATGACTTTGTGCTGTGGGAATCGAGAGCGATCCTGACGTACCTGTGCGAAAAGTACGGCAAAAACGACGGCCTCTATCCGAAGGATCCGAAAAAGCGTGCCGTCGTGAACCAGCGCCTGTACTTCGACATGGGCACGCTGTACCAGCGGTTCTCGCAAGCCTTCTACCCGGTCATGATGGAGGGCAAGGAGCTGAACCCCGAACTGGTGGTGAAGCTAGACGAAGCGCTCGAGTTTTTGGAAAGCTTCCTCGACAAAACACCCTTCGCTGCGGGCGATAAGCTAACGGTTGCCGATTTCAGTCTGCTGACGAGCATCACTACCATCGACGTGACGGCCGGGCACGATCTCAGCAAGTACGCCAACATTCAGCGTTGGTACAGCCAGCTGAAGGAGT]
[+] EMBL AGA284972            [                                                                                                                                                               GAAAGGTGAACATCTTAAACCGGAGTTCCTGAAGATCAACCCACAACACACCGTCCCGACGCTGGTCGACAATGACTTTGTGCTGTGGGAATCGAGAGCGATCCTGACGTACCTGTGCGAAAAGTACGGCAAAAACGACGGCCTCTATCCGAAGGATCCGAAAAAGCGTGCCGTCGTGAACCAGCGCCTGTACTTCGACATGGGCACGCTGTACCAGCGGTTCTCGCAAGCCTTCTACCCGGTCATGATGGAGGGCAAGGAGCTGAACCCCGAACTGGTGGTGAAGCTAGACGAAGCGCTCGAGTTTTTGGAAAGCTTCCTCGACAAAACACCCTTCGCTGCGGGCGATAAGCTAACGGTTGCCGATTTCAGTCTGCTGACGAGCATCACAACCATCGACGTGACGGCCGGGCACGATC                                                ]


>consensus_7453#1 CCGCGGACGCGTGGGGTTCTTTCCGTGTGCTCCGGACGCAGACGCGCTTCTTTGCGGTAT GGATTTCTATCACCTTCCCCTGTCGGCCCCGTGCCAATCGATCCGTCTGTTGGCCAAAGC GCTCGGTCTACATTTGAACCTAAAGGAGGTCGACCTGTTGAAAGGTGAACATCTTAAACC GGAGTTCCTGAAGATCAACCCACAACACACCGTACCGACGCTGGTCGACAATGACTTTGT GCTGTGGGAATCGAGAGCGATCCTGACGTACCTGTGCGAAAAGTACGGCAAAAACGACGG CCTCTATCCGAAGGATCCGAAAAAGCGTGCCGTCGTGAACCAGCGCCTGTACTTCGACAT GGGCACGCTGTACCAGCGGTTCTCGCAAGCCTTCTACCCGGTCATGATGGAGGGCAAGGA GCTGAACCCCGAACTGGTGGTGAAGCTAGACGAAGCGCTCGAGTTTTTGGAAAGCTTCCT CGACAAAACACCCTTCGCTGCGGGCGATAAGCTAACGGTTGCCGATTTCAGTCTGCTGAC GAGCATCACTACCATCGACGTGACGGCCGGGCACGATCTCAGCAAGTACGCCAACATTCA GCGTTGGTACAGCCAGCTGAAGGAGT



consensusID : consensus_7453#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 339
fasta sequence
                              [AAGGCAGAATCCGCACGANTGTATCTTTCCTGTGTGCTCCGGNCGCAGACGCGCTTCTTCGCGGTATGGATTTCTATCACCTTACCCCTGGTCGGCCCCGTGCCAATCGATCCGTCTGTATGGCCAAAGCTGCTCGGTCTACATTTGAACCTAAAGGAGGTCGACCGTGTTGAAAGGCGAACACCGTGAAACCGGAGTTCCTGAAGATCAAGCNCCACAACACACCGTACCGACGCTGGTCGACAATGACTTTGTGCTGTGGGAAGTCGAGAGCGATCCTGACGTACCTGTGCGAAGAAGTACGGCGAAAAAGCGACGGNCGTCGTANTCCGAAGGAGT]

[+] EMBL BX468005             [AAGGCAGAATCCGCACGANTGTATCTTTCCTGTGTGCTCCGGNCGCAGACGCGCTTCTTCGCGGTATGGATTTCTATCACCTTACCCCTGGTCGGCCCCGTGCCAATCGATCCGTCTGTATGGCCAAAGCTGCTCGGTCTACATTTGAACCTAAAGGAGGTCGACCGTGTTGAAAGGCGAACACCGTGAAACCGGAGTTCCTGAAGATCAAGCNCCACAACACACCGTACCGACGCTGGTCGACAATGACTTTGTGCTGTGGGAAGTCGAGAGCGATCCTGACGTACCTGTGCGAAGAAGTACGGCGAAAAAGCGACGGNCGTCGTANTCCGAAGGAGT]


>consensus_7453#2 AAGGCAGAATCCGCACGANTGTATCTTTCCTGTGTGCTCCGGNCGCAGACGCGCTTCTTC GCGGTATGGATTTCTATCACCTTACCCCTGGTCGGCCCCGTGCCAATCGATCCGTCTGTA TGGCCAAAGCTGCTCGGTCTACATTTGAACCTAAAGGAGGTCGACCGTGTTGAAAGGCGA ACACCGTGAAACCGGAGTTCCTGAAGATCAAGCNCCACAACACACCGTACCGACGCTGGT CGACAATGACTTTGTGCTGTGGGAAGTCGAGAGCGATCCTGACGTACCTGTGCGAAGAAG TACGGCGAAAAAGCGACGGNCGTCGTANTCCGAAGGAGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7453#0      GGCCGTTGCCTCAGTTGCGATTAGGTTCTTTCCGTGTGCTCCGGACGCAGACGCGCTTCT 60
consensus_7453#1      --------CCGCGGACGCG-TGGGGTTCTTTCCGTGTGCTCCGGACGCAGACGCGCTTCT 51
consensus_7453#2      --AAGGCAGAATCCGCACGANTGTATCTTTCCTGTGTGCTCCGGNCGCAGACGCGCTTCT 58
                                       **      *  ** * *********** ***************

consensus_7453#0      TTGCGGTATGGATTTCTATCACCTTCCCCT--GTCGGCCCCGTGCCAATCGATCCGTCTG 118
consensus_7453#1      TTGCGGTATGGATTTCTATCACCTTCCCCT--GTCGGCCCCGTGCCAATCGATCCGTCTG 109
consensus_7453#2      TCGCGGTATGGATTTCTATCACCTTACCCCTGGTCGGCCCCGTGCCAATCGATCCGTCTG 118
                      * *********************** ***   ****************************

consensus_7453#0      T-TGGCCAAAGC-GCTCGGTCTACATTTGAACCTAAAGGAGGTCGACC-TGTTGAAAGGT 175
consensus_7453#1      T-TGGCCAAAGC-GCTCGGTCTACATTTGAACCTAAAGGAGGTCGACC-TGTTGAAAGGT 166
consensus_7453#2      TATGGCCAAAGCTGCTCGGTCTACATTTGAACCTAAAGGAGGTCGACCGTGTTGAAAGGC 178
                      * ********** *********************************** ********** 

consensus_7453#0      GAACATCTT-AAACCGGAGTTCCTGAAGATCAA--CCCACAACACACCGTACCGACGCTG 232
consensus_7453#1      GAACATCTT-AAACCGGAGTTCCTGAAGATCAA--CCCACAACACACCGTACCGACGCTG 223
consensus_7453#2      GAACACCGTGAAACCGGAGTTCCTGAAGATCAAGCNCCACAACACACCGTACCGACGCTG 238
                      ***** * * ***********************   ************************

consensus_7453#0      GTCGACAATGACTTTGTGCTGTGGGAA-TCGAGAGCGATCCTGACGTACCTGTGCGAA-A 290
consensus_7453#1      GTCGACAATGACTTTGTGCTGTGGGAA-TCGAGAGCGATCCTGACGTACCTGTGCGAA-A 281
consensus_7453#2      GTCGACAATGACTTTGTGCTGTGGGAAGTCGAGAGCGATCCTGACGTACCTGTGCGAAGA 298
                      *************************** ****************************** *

consensus_7453#0      AGTACGGCAAAAA--CGACGGCCTCTATCCGAAGGATCCGAAAAAGCGTGCCGTCGTGAA 348
consensus_7453#1      AGTACGGCAAAAA--CGACGGCCTCTATCCGAAGGATCCGAAAAAGCGTGCCGTCGTGAA 339
consensus_7453#2      AGTACGGCGAAAAAGCGACGGNCGTCGT------ANTCCGAAGGAGT------------- 339
                      ******** ****  ****** *    *        ******  **              

consensus_7453#0      CCAGCGCCTGTACTTCGACATGGGCACGCTGTACCAGCGGTTCTCGCAAGCCTTCTACCC 408
consensus_7453#1      CCAGCGCCTGTACTTCGACATGGGCACGCTGTACCAGCGGTTCTCGCAAGCCTTCTACCC 399
consensus_7453#2      ------------------------------------------------------------
                                                                                  

consensus_7453#0      GGTCATGATGGAGGGCAAGGAGCTGAACCCCGAACTGGTGGTGAAGCTAGACGAAGCGCT 468
consensus_7453#1      GGTCATGATGGAGGGCAAGGAGCTGAACCCCGAACTGGTGGTGAAGCTAGACGAAGCGCT 459
consensus_7453#2      ------------------------------------------------------------
                                                                                  

consensus_7453#0      CGAGTTTTTGGAAAGCTTCCTCGACAAAACACCCTTCGCTGCGGGCGATAAGCTAACGGT 528
consensus_7453#1      CGAGTTTTTGGAAAGCTTCCTCGACAAAACACCCTTCGCTGCGGGCGATAAGCTAACGGT 519
consensus_7453#2      ------------------------------------------------------------
                                                                                  

consensus_7453#0      TGCCGATTTCAGTCTGCTGACGAGCATCACTACCATCGACGTGACGGCCGGGCACGATCT 588
consensus_7453#1      TGCCGATTTCAGTCTGCTGACGAGCATCACTACCATCGACGTGACGGCCGGGCACGATCT 579
consensus_7453#2      ------------------------------------------------------------
                                                                                  

consensus_7453#0      CAGCAAGTACGCCAACATTCAGCGTTGGTACAGCCAGCTGAAGGAGTCGGTGGCGGGACA 648
consensus_7453#1      CAGCAAGTACGCCAACATTCAGCGTTGGTACAGCCAGCTGAAGGAGT------------- 626
consensus_7453#2      ------------------------------------------------------------
                                                                                  

consensus_7453#0      TCAGGACATTTGCGTCGAAGGTGCCATCCAGTTCCGTGACTCGTTCAACCCGATCAACAA 708
consensus_7453#1      ------------------------------------------------------------
consensus_7453#2      ------------------------------------------------------------
                                                                                  

consensus_7453#0      GTAAACCAAAAAAAAAAAAGAAACAATGCCATCCATCGCAAACGGTACAATAAACAACAA 768
consensus_7453#1      ------------------------------------------------------------
consensus_7453#2      ------------------------------------------------------------
                                                                                  

consensus_7453#0      CGTGGATGCGAAAAAAAA 786
consensus_7453#1      ------------------
consensus_7453#2      ------------------
                                        




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)