These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7463#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1113 fasta sequence [CCGCCCACGCGTCCGGTAACCTCGTACCGATTCTTGTACGCCCTCCCACCCGTGGGCAATAGTGCGTGTGAAGGGAAGAAAGAAAACTTCGTTTGGTTCGTGGTGAGCTTAGTGAAGGAGAAAGTGAACAAACGTTCGATAGCAGGTGAACAAGAGTGCATTTTGTGTGGCATAGAACAGAACGGCGGAAATCAGTTTTGTGTTTTGCTTTTGCTGACGCAGTGAAAGCATTTGCGGGGAGAAACGATATAAGTTCGTGTGCAGTTACAGTTTACACTCGTCTACAGGATGAAATATACGCTAGCTTTGCTTCCCCTGGCGGGACTCATCACCCTAGCGACAGCCCAGTACGGTCCGGCCCCGCCGAGGCTGAACATCCCCGGCGCCATCCCGCTGCCGCCGATACGCGAGGAGCGGCTGCTCCCGCAGCAGTCACCGCAAGTAATACGCGTGCGGCGTCCGGGCGCGGTGCGCATCGCCGCCCCGAACGCCATCCACCACCAACTGCCGTCCGCCCTTCCCAAATTCCACGACATCCCGAGCACGGTCGAGCACAAGCCGGTGACCGAGGAGCCGGAGGACGACTTCCGACCCGCCTTCATCCCGCAGCTCCAACAACCCCACCACCACCATCCCTCGCCCGCGACCCTTGCCTCTCCGGCGGCGCCGTCCCCGGCCGCCTCCCCGGCCCTGCAGTTCCCGATCCCGGCGGACGAGCAGCCGAGCGAGCGCGACCGCGAACTACAGCAAAATGTTCTCTCTCGCTTCAATGCACAGGAAAACCGGCCGGCACCGATCCAGCGCGCCCAGATCCCGGAGCGCTTCTTCGCCACCGACAAGGAACCGGCTCGGTTCCCGGCCGAGCGGCCCCAGCCGCAGCAGCAGCAGCAGCAACCCACCCCGAAGCAGTACCGACCGGCACCGCAGCAGATTGCCCGCCCGGGACCGATCGCAGCGCCGCAGCAGTCGTTCCGCCAGCAGCAGCACTTCCAGGACGAGGACCGCCGGCCCGCCCCGCACCAGCAGGCGGCCCGCCCGCACACGCAGCAGGACCAGGACCGGCAGCGCAAGCCGGTCGCGCAGATCCTGCGCAAGTGGCGCGAGGAGCACGAG] [+] EMBL BM636401 [CCGCCCACGCGTCCGGTAACCTCGTACCGATTCTTGTACGCCCTCCCACCCGTGGGCAATAGTGCGTGTGAAGGGAAGAAAGAAAACTTCGTTTGGTTCGTGGTGAGCTTAGTGAAGGAGAAAGTGAACAAACGTTCGATAGCAGGTGAACAAGAGTGCATTTTGTGTGGCATAGAACAGAACGGCGGAAATCAGTTTTGTGTTTTGCTTTTGCTGACGCAGTGAAAGCATTTGCGGGGAGAAACGATATAAGTTCGTGTGCAGTTACAGTTTACACTCGTCTACAGGATGAAATATACGCTAGCTTTGCTTCCCCTGGCGGGACTCATCACCCTAGCGACAGCCCAGTACGGTCCGGCCCCGCCGAGGCTGAACATCCCCGGCGCCATCCCGCTGCCGCCGATACGCGAGGAGCGGCTGCTCCCGCAGCAGTCACCGCAAGTAATACGCGTGCGGCGTCCGGGCGCGGTGCGCATCGCCGCCCCGAACGCCATCCACCACCAACTGCCGTCCGCCCTTCCCAAATTCCACGACATCCCGAGCACGGTCGAGCACAAGCCGGTGACCGAGGAGCCGGAGGACGACTTCCGACCCGCCTTCATCCCGCA ] [+] EMBL BM654922 [ ccgGCTTAGTGAAGGAGAAAGTGAACAAACGTTCGATAGCAGGTGAACAAGAGTGCATTTTGTGTGGCATAGAACAGAACGGCGGAAATCAGTTTTGTGTTTTGCTTTTGCTGACGCAGTGAAAGCATTTGCGGGGAGAAACGATATAAGTTCGTGTGCAGTTACAGTTTACACTCGTCTACAGGATGAAATATACGCTAGCTTTGCTTCCCCTGGCGGGACTCATCACCCTAGCGACAGCCCAGTACGGTCCGGCCCCGCCGAGGCTGAACATCCCCGGCGCCATCCCGCTGCCGCCGATACGCGAGGAGCGGCTGCTCCCGCAGCAGTCACCGCAAGTAATACGCGTGCGGCGTCCGGGCGCGGTGCGCATCGCCGCCCCGAACGCCATCCACCACCAACTGCCGTCCGCCCTTCCCAAATTCCACGACATCCCGAGCACGGTCGAGCACAAGCCGGTGACCGAGGAGCCGGAGGACGACTTCCGACCCGCCTTCATCCCGCAGCTCCAACAACCCCACCACCACCATCCCTCGCCCGCGACCCTTGCCTCTCCGGCGGCGCCGTCCCCGGCCGCCTCCCCGGCCCTGCAGTTCCCGATCCCGGCGGACGAGCAGCCGAGCGAGCGCGACCGCGAACTACAGCAAAATGTTCTCTCTCGCTTC ] [+] EMBL BM625720 [ ccGCGGGACTCATCACCCTAGCGACAGCCCAGTACGGTCCGGCCCCGCCGAGGCTGAACATCCCCGGCGCCATCCCGCTGCCGCCGATACGCGAGGAGCGGCTGCTCCCGCAGCAGTCACCGCAAGTAATACGCGTGCGGCGTCCGGGCGCGGTGCGCATCGCCGCCCCGAACGCCATCCACCACCAACTGCCGTCCGCCCTTCCCAAATTCCACGACATCCCGAGCACGGTCGAGCACAAGCCGGTGACCGAGGAGCCGGAGGACGACTTCCGACCCGCCTTCATCCCGCAGCTCCAACAACCCCACCACCACCATCCCTCGCCCGCGACCCTTGCCTCTCCGGCGGCGCCGTCCCCGGCCGCCTCCCCGGCCCTGCAGTTCCCGATCCCGGCGGACGAGCAGCCGAGCGAGCGCGACCGCGAACTACAGCAAAATGTTCTCTCTCGCTTCAATGCACAGGAAAACCGGCCGGCACCGATCCAGCGCGCCCAGATCCCGGAGCGCTTCTTCGCCACCGACAAGGAACCGGCTCGGTTCCCGGCCGAGCGGCCCCAGCCGCAGCAGCAGCAGCAGCAACCCACCCCGAAGCAGTACCGACCGGCACCGCAGCAGATTGCCCGCCCGGGACCGA ] [+] EMBL BX609781 [ CCTGCAGTTCCCGATCCCGGCGGACGAGCAGCCGAGCGAGCGCGACCGCGAACTACAGCAAAATGTTCTCTCTCGCTTCAATGCACAGGAAAACCGGCCGGCACCGATCCAGCGCGCCCAGATCCCGGAGCGCTTCTTCGCCACCGACAAGGAACCGGCTCGGTTCCCGGCCGAGCGGCCCCAGCCGCAGCAGCAGCAGCAGCAACCCACCCCGAAGCAGTACCGACCGGCACCGCAGCAGATTGCCCGCCCGGCACCGATCGCAGCGCCGCAGCAGTCGTTCCGCCAGCAGCAGCACTTCCAGGACGAGGACCGCCGGCCCGCCCCGCACCAGCAGGCGGCCCGCCCGCACACGCAGCAGGACCAGGACCGGCAGCGCAAGCCGGTCGCGCAGATCCTGCGCAAGTGGCGCGAGGAGCACGAG] consensusID : consensus_7463#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 717 fasta sequence [GACCCACGCGTCCGGTCTGGAACGGTTTGCAAGTAACCTCGTACCGATTCTTGTACGCCCTCCCACCCGTGGGCAATAGTGCGTGTGAAGGGAAGAAAGAAAACTTCGTTTGGTTCGTGGTGAGCTTAGTGAAGGAGAAAGTGAACAAACGTTCGATAGCAGGTGAACAAGAGTGCATTTTGTGTGGCATAGAACAGAACGGCGGAAATCAGTTTTGTGTTTTGCTTTTGCTGACGCAGTGAAAGCATTTGCGGGGAGAAACGATATAAGTTCGTGTGCAGTTACAGTTTACACTCGTCTACAGGATGAAATATACGCTAGCTTTGCTTCCCCTGGCGGGACTCATCACCCTAGCGACAGCCCAGTACGGTCCGGCCCCGCCGAGGCTGAACATCCCCGGCGCCATCCCGCTGCCGCCGATACGCGAGGAGCGGCTGCTCCCGCAGCAGTCACCGCAAGAAAACCGGCCGGCACCGATCCAGCGCGCCCAGATCCCGGAGCGCTTCTTCGCCACCGACAAGGAACCGGCCCGGTTCCCGGCCGAGCGGCCCCAGCCGCAGCAGCAGCAGCAGCAGCAACCCACCCCGAAGCAGTACCGGCCGGCACCGCAGCAGATCGCCCGCCCGGCACCGATCGCAGCGCCGCAGCAGTCGTTCCGCCAGCAGCAGCACTTCCAGGACGAGGACCGCCGGGCCGCTCCCGCACCAGCAGGCGGGC] [+] EMBL BM620126 [GACCCACGCGTCCGGTCTGGAACGGTTTGCAAGTAACCTCGTACCGATTCTTGTACGCCCTCCCACCCGTGGGCAATAGTGCGTGTGAAGGGAAGAAAGAAAACTTCGTTTGGTTCGTGGTGAGCTTAGTGAAGGAGAAAGTGAACAAACGTTCGATAGCAGGTGAACAAGAGTGCATTTTGTGTGGCATAGAACAGAACGGCGGAAATCAGTTTTGTGTTTTGCTTTTGCTGACGCAGTGAAAGCATTTGCGGGGAGAAACGATATAAGTTCGTGTGCAGTTACAGTTTACACTCGTCTACAGGATGAAATATACGCTAGCTTTGCTTCCCCTGGCGGGACTCATCACCCTAGCGACAGCCCAGTACGGTCCGGCCCCGCCGAGGCTGAACATCCCCGGCGCCATCCCGCTGCCGCCGATACGCGAGGAGCGGCTGCTCCCGCAGCAGTCACCGCAAGAAAACCGGCCGGCACCGATCCAGCGCGCCCAGATCCCGGAGCGCTTCTTCGCCACCGACAAGGAACCGGCCCGGTTCCCGGCCGAGCGGCCCCAGCCGCAGCAGCAGCAGCAGCAGCAACCCACCCCGAAGCAGTACCGGCCGGCACCGCAGCAGATCGCCCGCCCGGCACCGATC ] [+] EMBL BM630411 [ CCGGTCTGGAACGGTTTGCAAGTAACCTCGTACCGATTTTTGTACGCCCTCCCACCCGTGGGCAATAGTGCGTGTGAAGGGAAGAAAGAAAACTTCGTTTGGTTCGTGGTGAGCTTAGTGAAGGAGAAAGTGAACAAACGTTCGATAGCGGGTGAAAAAGAGTGCATTTTGTGTGGCATAGAACAGAACGGCGGAAATCAGTTTTGTGTTTTGCTTTTGCTGACGCAGTGAAAGCATTTGCGGGGAGAAACGATAT AGTTCGTGTGCAGTTACAGTTTACACTCGTCTACAGGATGAAATATACGCTAGCTTTGCTTCCCCTGGCGGGACTCATCACCCTAGCGACAGCCCAGTACGGTCCGGCCCCGCCGAGGCTGAACATCCCCGGCGCCATCCCGCTGCCGCCGATACGCGAGGAGCGGCTGCTCCCGCAGCAGTCACCGCAAGAAAACCGGCCGGCACCGATCCAGCGCGCCCAGATCCCGGAGCGCTTCTTCGCCACCGACAAGGAACCGGCTCGGTTCCCGGCCGAGCGGCCCCAGCC GCAGCAGCAGCAGCAGCAACCCACCCCGAAGCAGTACCGACCGGCACCGCAGCAGATTGCCCGCCCGGCACCGATCGCAGCGCCGCAGCAGTCGTTCCGCCAGCAGCAGCACTTCCAGGACGAGGACCGCCGGGCCGCTCCCGCACCAGCAGGCGGGC] consensusID : consensus_7463#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence [CCGCCCACGCGTCCGGTTCGATAGCAGGTGAACAAGAGTGCATTTTGTGTGGCATAGAACAGAACGGCGGAAATCAGTTTTGTGTTTTGCTTTTGCTGACGCAGTGAAAGCATTTGCGGGGAGAAACGATATAAGTTCGTGTGCAGTTACAGTTTACACTCGTCTACAGGATGAAATATACGCTAGCTTTGCTTCCCCTGGCGGGACTCATCACCCTAGCGACAGCCCAGTACGGTCCGGCCCCGCCGAGGCTGAACATCCCCGGCGCCATCCCGCTGCCGCCGATACGCGAGGAGCGGCTGCTCCCGCAGCAGTCACCGCAAGTAATACGCGTGCGGCGTCCGGGCGCGGTGCGCATCGCCGCCCCGAACGCCATCCACCACCAACTGCCGTCCGCCCTTCCCAAATTCCACGACATCCCGAGCACGGTCGAGCACAAGCCGGTGACCGAGGAGCCGGAGGACGACTTCCGACCCGCCTTCATCCCGCAGCTCCAACAACCCCACCACCATCCCTCGCCCGCGACCCTTGCCTCTCCGGCGGCACCGTCCCCGGCCGCCTCCCCGGCCCTGCAGTTCCCGATCCCGGCGGACGAGCAGCCGAGCGAGCGCGACCGCGAACTACAGCAAAATGTTCTCTCTCGCTTCATGCACAGGGAAAACC] [+] EMBL BM639196 [CCGCCCACGCGTCCGGTTCGATAGCAGGTGAACAAGAGTGCATTTTGTGTGGCATAGAACAGAACGGCGGAAATCAGTTTTGTGTTTTGCTTTTGCTGACGCAGTGAAAGCATTTGCGGGGAGAAACGATATAAGTTCGTGTGCAGTTACAGTTTACACTCGTCTACAGGATGAAATATACGCTAGCTTTGCTTCCCCTGGCGGGACTCATCACCCTAGCGACAGCCCAGTACGGTCCGGCCCCGCCGAGGCTGAACATCCCCGGCGCCATCCCGCTGCCGCCGATACGCGAGGAGCGGCTGCTCCCGCAGCAGTCACCGCAAGTAATACGCGTGCGGCGTCCGGGCGCGGTGCGCATCGCCGCCCCGAACGCCATCCACCACCAACTGCCGTCCGCCCTTCCCAAATTCCACGACATCCCGAGCACGGTCGAGCACAAGCCGGTGACCGAGGAGCCGGAGGACGACTTCCGACCCGCCTTCATCCCGCAGCTCCAACAACCCCACCACCATCCCTCGCCCGCGACCCTTGCCTCTCCGGCGGCACCGTCCCCGGCCGCCTCCCCGGCCCTGCAGTTCCCGATCCCGGCGGACGAGCAGCCGAGCGAGCGCGACCGCGAACTACAGCAAAATGTTCTCTCTCGCTTCATGCACAGGGAAAACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7463#0 -----------------CCGCCCACGCGTCCGGTAACCTCGTACCGATTCTTGTACGCCC 43 consensus_7463#2 ------------------------------------------------------------ consensus_7463#1 GACCCACGCGTCCGGTCTGGAACGGTTTGCAAGTAACCTCGTACCGATTCTTGTACGCCC 60 consensus_7463#0 TCCCACCCGTGGGCAATAGTGCGTGTGAAGGGAAGAAAGAAAACTTCGTTTGGTTCGTGG 103 consensus_7463#2 ------------------------------------------------------------ consensus_7463#1 TCCCACCCGTGGGCAATAGTGCGTGTGAAGGGAAGAAAGAAAACTTCGTTTGGTTCGTGG 120 consensus_7463#0 TGAGCTTAGTGAAGGAGAAAGTGAACAAACGTTCGATAGCAGGTGAACAAGAGTGCATTT 163 consensus_7463#2 ------------CCGCCCACGCGTCCG---GTTCGATAGCAGGTGAACAAGAGTGCATTT 45 consensus_7463#1 TGAGCTTAGTGAAGGAGAAAGTGAACAAACGTTCGATAGCAGGTGAACAAGAGTGCATTT 180 * * * * * ****************************** consensus_7463#0 TGTGTGGCATAGAACAGAACGGCGGAAATCAGTTTTGTGTTTTGCTTTTGCTGACGCAGT 223 consensus_7463#2 TGTGTGGCATAGAACAGAACGGCGGAAATCAGTTTTGTGTTTTGCTTTTGCTGACGCAGT 105 consensus_7463#1 TGTGTGGCATAGAACAGAACGGCGGAAATCAGTTTTGTGTTTTGCTTTTGCTGACGCAGT 240 ************************************************************ consensus_7463#0 GAAAGCATTTGCGGGGAGAAACGATATAAGTTCGTGTGCAGTTACAGTTTACACTCGTCT 283 consensus_7463#2 GAAAGCATTTGCGGGGAGAAACGATATAAGTTCGTGTGCAGTTACAGTTTACACTCGTCT 165 consensus_7463#1 GAAAGCATTTGCGGGGAGAAACGATATAAGTTCGTGTGCAGTTACAGTTTACACTCGTCT 300 ************************************************************ consensus_7463#0 ACAGGATGAAATATACGCTAGCTTTGCTTCCCCTGGCGGGACTCATCACCCTAGCGACAG 343 consensus_7463#2 ACAGGATGAAATATACGCTAGCTTTGCTTCCCCTGGCGGGACTCATCACCCTAGCGACAG 225 consensus_7463#1 ACAGGATGAAATATACGCTAGCTTTGCTTCCCCTGGCGGGACTCATCACCCTAGCGACAG 360 ************************************************************ consensus_7463#0 CCCAGTACGGTCCGGCCCCGCCGAGGCTGAACATCCCCGGCGCCATCCCGCTGCCGCCGA 403 consensus_7463#2 CCCAGTACGGTCCGGCCCCGCCGAGGCTGAACATCCCCGGCGCCATCCCGCTGCCGCCGA 285 consensus_7463#1 CCCAGTACGGTCCGGCCCCGCCGAGGCTGAACATCCCCGGCGCCATCCCGCTGCCGCCGA 420 ************************************************************ consensus_7463#0 TACGCGAGGAGCGGCTGCTCCCGCAGCAGTCACCGCAAGTAATACGCGTGCGGCGTCCGG 463 consensus_7463#2 TACGCGAGGAGCGGCTGCTCCCGCAGCAGTCACCGCAAGTAATACGCGTGCGGCGTCCGG 345 consensus_7463#1 TACGCGAGGAGCGGCTGCTCCCGCAGCAGTCACCGCAAG-AAAAC-CGGCCGGCACC--G 476 *************************************** ** ** ** **** * * consensus_7463#0 GCGCGGTGCGCATCGCCGCCCCGAACGCCA-TCCACCACCAACTGCCGTCCGCCCTTCCC 522 consensus_7463#2 GCGCGGTGCGCATCGCCGCCCCGAACGCCA-TCCACCACCAACTGCCGTCCGCCCTTCCC 404 consensus_7463#1 ATCCAGCGCGC-CCAGATCCCGGAGCGCTTCTTCGCCACCGACAAGGAACCGGCCCGGTT 535 * * **** * *** ** *** * * ***** ** *** ** consensus_7463#0 AAATTCCACGACATCCCGAGCACGGTCGAGCACAAGCCGGTGACCGAGGAGCCGGAGGAC 582 consensus_7463#2 AAATTCCACGACATCCCGAGCACGGTCGAGCACAAGCCGGTGACCGAGGAGCCGGAGGAC 464 consensus_7463#1 CCCGGCCGAGCGGCCCCAGCCGCAGC--AGCAGCAGC-AGCAGCAACCCACCCCGAAGCA 592 ** * *** * * * **** *** * * * ** ** * consensus_7463#0 GACTTCCGACCCGCCTTCATCCCGCAGCTCCAACAACCCCACCACCACCATCCCTCGCCC 642 consensus_7463#2 GACTTCCGACCCGCCTTCATCCCGCAGCTCCAACAACCCCACCACCA---TCCCTCGCCC 521 consensus_7463#1 G--TACCGGCCGGCACC---GCAGCAGATC--GCCCGCCCGGCACCG--ATCGCAGCGCC 643 * * *** ** ** * **** ** * *** **** ** * ** consensus_7463#0 GCGACCCTTGCCTCTCCGGCGGCGCCGTCCCCGGCCGCCTCCCCGGCCCTGCAGTTCCCG 702 consensus_7463#2 GCGACCCTTGCCTCTCCGGCGGCACCGTCCCCGGCCGCCTCCCCGGCCCTGCAGTTCCCG 581 consensus_7463#1 GCAGCAGTCGTTCCGCCAGCAGCAGCACTTCCAGG-ACGAGGACCGCCGGGCCGCTCCCG 702 ** * * * * ** ** ** * ** * * * *** ** * ***** consensus_7463#0 ATCCCGGCGGACGAGCAGCCGAGCGAGCGCGACCGCGAACTACAGCAAAATGTTCTCTCT 762 consensus_7463#2 ATCCCGGCGGACGAGCAGCCGAGCGAGCGCGACCGCGAACTACAGCAAAATGTTCTCTCT 641 consensus_7463#1 -CACCAGCAGGCGGGC-------------------------------------------- 717 ** ** * ** ** consensus_7463#0 CGCTTCAATGCACAGGAAAACCGGCCGGCACCGATCCAGCGCGCCCAGATCCCGGAGCGC 822 consensus_7463#2 CGCTTCA-TGCACAGGGAAAACC------------------------------------- 663 consensus_7463#1 ------------------------------------------------------------ consensus_7463#0 TTCTTCGCCACCGACAAGGAACCGGCTCGGTTCCCGGCCGAGCGGCCCCAGCCGCAGCAG 882 consensus_7463#2 ------------------------------------------------------------ consensus_7463#1 ------------------------------------------------------------ consensus_7463#0 CAGCAGCAGCAACCCACCCCGAAGCAGTACCGACCGGCACCGCAGCAGATTGCCCGCCCG 942 consensus_7463#2 ------------------------------------------------------------ consensus_7463#1 ------------------------------------------------------------ consensus_7463#0 GGACCGATCGCAGCGCCGCAGCAGTCGTTCCGCCAGCAGCAGCACTTCCAGGACGAGGAC 1002 consensus_7463#2 ------------------------------------------------------------ consensus_7463#1 ------------------------------------------------------------ consensus_7463#0 CGCCGGCCCGCCCCGCACCAGCAGGCGGCCCGCCCGCACACGCAGCAGGACCAGGACCGG 1062 consensus_7463#2 ------------------------------------------------------------ consensus_7463#1 ------------------------------------------------------------ consensus_7463#0 CAGCGCAAGCCGGTCGCGCAGATCCTGCGCAAGTGGCGCGAGGAGCACGAG 1113 consensus_7463#2 --------------------------------------------------- consensus_7463#1 --------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||