cluster # 7464

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Anopheles gambiae
cluster # 7464 cluster # 7464 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7464#0 length = 444 sequences # 4

consensus_7464#1 length = 441 sequences # 3

consensusID : consensus_7464#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 444
fasta sequence

                              [CGACAGCGACCGGGAAAAGAAACTCATCAACACAACCAGAAGTGTCTCTAATCATGAGATTCTTGTCCGTCTTGACTGTTGGACTGTTGGTTTGGGTCGGAGTGTTTGCAACCGTAAACGCGGAAGACCCCCGTACCGAGCTGATAGGTTGCGGCAGTGTTTTGTTTCACCTGGCAGCGAATCGGCTGTCCCTTCAGCTTGAAGAATTTGCTGTCTGTAAGCGGTCAAACCCTGGCTACGATTGCAGCGACAGTATTCACCGGGCAATTAGTGACCTTCAGCAGGGGCTGTTTGACCTCAACCACTGTACAAAGGATATTCGCTAGCAATCCTTAAAAGTAAACCTTTTTGCCATGTACTTAGTAGGAACACGTGTAAAATTTGCCCTCAGAAAAGATGTGAAAAAATAAAAATAAATACTACTAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF541512             [CGACAGCGACCGGGAAAAGAAACTCATCAACACAACCAGAAGTGTCTCTAATCATGAGATTCTTGTCCGTCTTGACTGTTGGACTGTTGGTTTGGGTCGGAGTGTTTGCAACCGTAAACGCGGAAGACCCCCGTACCGAGCTGATAGGTTGCGGCAGTGTTTTGTTTCACCTGGCAGCGAATCGGCTGTCCCTTCAGCTTGAAGAATTTGCTGTCTGTAAGCGGTCAAACCCTGGCTACGATTGCAGCGACAGTATTCACCGGGCAATTAGTGACCTTCAGCAGGGGCTGTTTGACCTCAACCACTGTACAAAGGATATTCGCTAGCAATCCTTAAAAGTAAACCTTTTTGCCATGTACTTAGTAGGAACACGTGTAAAATTTGCCCTCAGAAAAGATGTGAAAAAATAAAAATAAATACTACTAAAAAAAAAA          ]
[+] EMBL BM603895             [  ccgGCGACCGGGAAAAGAAACTCATCAACACAACCAGAAGTGTCTCTAATCATGAGATTCTTGTCCGTCTTGACTGTTGGACTGTTGGTTTGGGTCGGAGTGTTTGCAACCGTAAACGCGGAAGACCCCCGTACCGAGCTGATAGGTTGCGGCAGTGTTTTGTTTCACCTGGCAGCGAATCGGCTGTCCCTTCAGCTTGAAGAATTTGCTGTCTGTAAGCGGTCAAACCCTGGCTACGATTGCAGCGACAGTATTCACCGGGCAATTAGTGACCTTCAGCAGGGGCTGTTTGACCTCAACCACTGTACAAAGGATATTCGCTAGCAATCCTTAAAAGTAAACCTTTTTGCCATGTACTTAGTAGGAACACGTGTAAAATTTGCCCTCAGAAAAGGTGTGAAAAAATAAAAATAAATACTACaacgc                ]
[+] EMBL BM592414             [        ccgGGGAAAAGAAACTTATCAACACAACCAGAAGCGTCTCTAATCATGAGATTCTTGTCCGTCTTGACTGTTGGACTGTTGGTTTGGGTCGGAGTGTTTGCAACCGTAAACGCAGAAGACCCCCGTACCGAGCTGATAGGTTGCGGCAGTGTTTTGTTTCACCTGGCAGCGAATCGACTGTCCCTTCAGCTTGAAGAATTTGCTGTCTGTAAGCGGTCAAACCCTGGCTACGATTGCAGCGACAGTATTCACCGGGCAATTAGTGACCTTCAGCAGGGGCTGTTTGACCTCAACCACTGTACAAAGGATATTCGCTAGCAATCCTTAAAAGTAAACCTTTTTGCCATGTACTTAGTAGGAACACGTGTAAAATTTGCCCT                                                        ]
[+] EMBL AF457557             [                                                              TTGTCCGTCTTGACTGTTGGACTGTTGGTTTGGGTCGGAGTGTTTGCAACCGTAAACGCGGAAGACCCCCGTACCGAGCTGATAGGTTGCGGCAGTGTTTTGTTTCACCTGGCAGCGAATCGGCTGTCCCTTCAGCTTGAAGAATTTGCTGTCTGTAAGCGGTCAAACCCTGGCTACGATTGCAGCGACAGTATTCACCGGGCAATTAGTGACCTTCAGCAGGGGCTGTTTGACCTCAACCACTGTACAAAGGATATTCGCTAGCAATCCTTAAAAGTAAACCTTTTTGCCATGTACTTAGTAGGAACACGTGTAAAATTTGCCCTCAGAAAAGATGTGAAAAAATAAAAATAAATACTACTAAAAAAAAAAAAAAAAAAAA]




>consensus_7464#0
CGACAGCGACCGGGAAAAGAAACTCATCAACACAACCAGAAGTGTCTCTAATCATGAGAT
TCTTGTCCGTCTTGACTGTTGGACTGTTGGTTTGGGTCGGAGTGTTTGCAACCGTAAACG
CGGAAGACCCCCGTACCGAGCTGATAGGTTGCGGCAGTGTTTTGTTTCACCTGGCAGCGA
ATCGGCTGTCCCTTCAGCTTGAAGAATTTGCTGTCTGTAAGCGGTCAAACCCTGGCTACG
ATTGCAGCGACAGTATTCACCGGGCAATTAGTGACCTTCAGCAGGGGCTGTTTGACCTCA
ACCACTGTACAAAGGATATTCGCTAGCAATCCTTAAAAGTAAACCTTTTTGCCATGTACT
TAGTAGGAACACGTGTAAAATTTGCCCTCAGAAAAGATGTGAAAAAATAAAAATAAATAC
TACTAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_7464#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 441
fasta sequence

                              [CCGGCGA-CCG-GGAAAAGAAACTCATCAACACAACCAGAAGCGTCTCTAATCATGAGATTCTTGTCCGTCTTGACTGTCGGACTGTTGGTTTGGGTC-GGAGTGTTTGCAGCCGTAAACGCGGAAGACCCCCGTACCGAGCTGATAGGTTGCGGCAGTGTTTTGTTTCACCTGGCAGCGAATCGGCTGTCCCTTCAGCTTGAAGAATTTGCTGTCTGTAAGCGGTCAAACCCTGGCTACGATTGCAGCGACAGTATTCACCG-GGCAATTAGTGACCTTCAGCAGGGGCTGTTTGACCTCAACCACTGTACAAAGGATATTCGCTAGCAATCCTTAAAAGTAAACCTTTTTGCCATGTACTTAGTAGGAACACGTGTAAAATTTGCCCTCAGAAAAGGTGTGAAAACGAAAAAATAAATACTACAACGCACTTTTCAAAACGTC]

[+] EMBL BM622479             [CCGGCGA CCG GGAAAAGAAACTCATCAACACAACCAGAAGTGTCTCTAATCATGGGATTTTTGTCCGTCTTGACTGTCGGACTGTTGGTTTGGGTC GGAGTGTTTGCAACCGTAAACGCGGAAGACTCCCGTACCGAGCTGATAGGTTGCGGCAGTGTTTTGTTTCACCTGGCAGCGAATCGGCTGTCCCTTCAGCTTGAAGAATTTGCTGTCTGTAAGCGGTCAAACCCTAGCTACGATTGCAGCGACAGTATTCACCG GGCAATTAGTGACCTTCAGCAAGGGCTGTTTGACCTCAACCACTGTACAAAGGATATTCGCTAGCAATCCTTAAAAGTAAATCTTTTTGCCATGTACTTAGTAGGAACACGTGTAAAATTTGCCCTCAGAAAAGGTGTGAAAACGAAAAAATAAATACTACAACGCACTTTTCAAAACGTC]
[+] EMBL CNS08RAA             [   GCGATCCGCGGAAAAGAAACTCATCAACACAACCAGAAGCGTCTCTAATCATGAGATTCTTGTCCGTCTTGACTGTCGGACTGTTGGTTTGGGTC GGGGTGTTTGCAGCCGTAAACGCGGAAGACCCCCGTACCGAGCTGATAGGTTGCGGCAGTATTTTGTTTCACCTGGCAGCGAATCGGCTGTCCCTTCAGCTTGAAGAATTTGCTGTCTGTAAGCGGTCAAACCCTGGCTACGATTGCAGCGACAGTATTCACCGCGGCAATTAGTGACCTTCAGCAGGGGCTGTTTGACCTCAACCACTGTACAAAGGATATTCGCTAGCAATCCTTAAAAGTAAACCTTTTTGCCATGTACTTAGTAGGAACACGTGTAAAATTTGCCCTCAGAAAAGGTGTGAAAACGAAAAAATAAATACT                      ]
[+] EMBL CNS09B61             [                        CATCAACACAACCAGAAGCGTCTCTAATCATGAGATTCTTGTCCGTCTTGACTGTCGGACTGTTGGTTTGGGTCGGGTGTGTTTGCAGCCGTAAACGCGGAAGACCCCCGTACCGAGCTGATAGGTTGCGGCAGTGTTTTGTTTCACCTGGCAGCGAATCGGCTGTCCCTTCAGCTTGAAGAATTTGCTGTCTGTAAGCGGTCAAACCCTGGCTACGATTGCAGCGACAGTATTCACCG GGCAATTAGTGACCTTCAGCAGGGGCTGTTTGACCTCAACCACTGTACAAAGGATATTCGCTAGCAATCCTTAAAAGTAAACCTTTTTGCCATGTACTTAGTAGGA                                                                           ]




>consensus_7464#1
CCGGCGACCGGGAAAAGAAACTCATCAACACAACCAGAAGCGTCTCTAATCATGAGATTC
TTGTCCGTCTTGACTGTCGGACTGTTGGTTTGGGTCGGAGTGTTTGCAGCCGTAAACGCG
GAAGACCCCCGTACCGAGCTGATAGGTTGCGGCAGTGTTTTGTTTCACCTGGCAGCGAAT
CGGCTGTCCCTTCAGCTTGAAGAATTTGCTGTCTGTAAGCGGTCAAACCCTGGCTACGAT
TGCAGCGACAGTATTCACCGGGCAATTAGTGACCTTCAGCAGGGGCTGTTTGACCTCAAC
CACTGTACAAAGGATATTCGCTAGCAATCCTTAAAAGTAAACCTTTTTGCCATGTACTTA
GTAGGAACACGTGTAAAATTTGCCCTCAGAAAAGGTGTGAAAACGAAAAAATAAATACTA
CAACGCACTTTTCAAAACGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7464#0      CGACAGCGACCGGGAAAAGAAACTCATCAACACAACCAGAAGTGTCTCTAATCATGAGAT 60
consensus_7464#1      --CCGGCGACCGGGAAAAGAAACTCATCAACACAACCAGAAGCGTCTCTAATCATGAGAT 58
                         * ************************************* *****************

consensus_7464#0      TCTTGTCCGTCTTGACTGTTGGACTGTTGGTTTGGGTCGGAGTGTTTGCAACCGTAAACG 120
consensus_7464#1      TCTTGTCCGTCTTGACTGTCGGACTGTTGGTTTGGGTCGGAGTGTTTGCAGCCGTAAACG 118
                      ******************* ****************************** *********

consensus_7464#0      CGGAAGACCCCCGTACCGAGCTGATAGGTTGCGGCAGTGTTTTGTTTCACCTGGCAGCGA 180
consensus_7464#1      CGGAAGACCCCCGTACCGAGCTGATAGGTTGCGGCAGTGTTTTGTTTCACCTGGCAGCGA 178
                      ************************************************************

consensus_7464#0      ATCGGCTGTCCCTTCAGCTTGAAGAATTTGCTGTCTGTAAGCGGTCAAACCCTGGCTACG 240
consensus_7464#1      ATCGGCTGTCCCTTCAGCTTGAAGAATTTGCTGTCTGTAAGCGGTCAAACCCTGGCTACG 238
                      ************************************************************

consensus_7464#0      ATTGCAGCGACAGTATTCACCGGGCAATTAGTGACCTTCAGCAGGGGCTGTTTGACCTCA 300
consensus_7464#1      ATTGCAGCGACAGTATTCACCGGGCAATTAGTGACCTTCAGCAGGGGCTGTTTGACCTCA 298
                      ************************************************************

consensus_7464#0      ACCACTGTACAAAGGATATTCGCTAGCAATCCTTAAAAGTAAACCTTTTTGCCATGTACT 360
consensus_7464#1      ACCACTGTACAAAGGATATTCGCTAGCAATCCTTAAAAGTAAACCTTTTTGCCATGTACT 358
                      ************************************************************

consensus_7464#0      TAGTAGGAACACGTGTAAAATTTGCCCTCAGAAAAGATGTGAAAAAATAAAAATAAATAC 420
consensus_7464#1      TAGTAGGAACACGTGTAAAATTTGCCCTCAGAAAAGGTGTGAAAACGAAAAAATAAATAC 418
                      ************************************ ********   ************

consensus_7464#0      TACTAAAAAAAAAAAAAAAAAAAA 444
consensus_7464#1      TACAACGCACTTTTCAAAACGTC- 441
                      *** *   *      ****