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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7465#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 969 fasta sequence
[CCGAAAACCTTTCATACGCACACACACACGCTCACCGTACTCGATCGATAGCGGGGTTAAAAACATTACATTCGATGGGTGTTCAGTGCGGTGTTGTTAGTTTTTGTCCCTAGTCATCCACAGCATCACGTCTCGTGCGGACCGCAGTGGTGATGGTGGTAGTTGTACAAATTGGGCTTGCCCTGCTGGTGGTGATCCTCACGATCAACTATCTGCTGGTGCG-GCAAAACATAAAGTATGGCAGACACATCCCGGGACCGGTTCCGCTGCCGATAGTGGGCTGCTTCTACCTTTACATTAATTTAAAGCCCGAAGACATCATCGACTTCGTATCGGACCTGCGCAAACGGTACGGCAACTTGTTCCGCGTCTGGATCGGCAACCGGTTAGCGTTGTTCTGCACCAACGTGAAGTACAACGAGACGGTTCTGAGCAGCCAGAAGCTGATCCGCAAGAGCG-AGCTGTACAAATTCCTTATCCCATGGCTGGGCGACGGGCTGCTGCTGAGCACGGGCCAGAAGTGGTTCGGCAAGCGTAAGATCCTTACGCCCGCCTTTCACTTCAAGATCCTCGATCAGTTCATCGAGGTGTTTCACAAGCAGAGCAGCATCCTGGCCGACCGGTTGCGGCCGGAAGCGAACGGGCAGCTGGTGAACATCTACCCGTTCGTGACGCTGGCGGCGCTGGACATCATCTGCGAAACGGCCATGGGTACCTCGATCAATGCACAGACCGATGCTGATTCGGCCTACGTGAAAGCGATCACGGAGCTGAGCCTGGTGCTTACGGGCAGGTTCGTGAAGGTGTGGCAGCGTGTTGACTTTCTGTTCAATCTGTCCCCGGACAAGCGGCGCCAGGATCGGATCATTAAGGTGCTGCATGATTTCACCACGAAGATCATACAATCGCGCCGCCGGGAGTTGATGGAGCAGGGTGGTGGTGGTGGTGGAACGGTCGAGGATGACGATA]
[+] EMBL BM621275 [CCGAAAACCTTTCATACGCACACACACACGCTCACCGTACTCGATCGATAGCGGGGTTAAAAACATTACATTCGATGGGTGTTCAGTGCGGTGTTGTTAGTTTTTGTCCCTAGTCATCCACAGCATCACGTCTCGTGCGGACCGCAGTGGTGATGGTGGTGGTTGTACAAATTGGGCTTGCCCTACTGGTCGTGATCCTCACGATCAACTATCTGCTGGTGCG GCAAAACATAAAGTATGGCAGACACATCCCGGGACCGGTTCCGCTGCCGATAGTGGGCTGCTTCTACCTTTACATTAATTTAAAGCCCGAAGACATCATCGACTTCGTATCGGACCTGCGCAAACGGTACGGCAACTTGTTCCGCGTCTGGATCGGCAACCGGTTAGCGTTGTTCTGCACCAACGTGAAGTACAACGAGACGGTCCTGAGCAGCCAGAAGCTGATCCGCAAGAGCG AGCTGTACAAATTCCTCATCCCATGGCTGGGCGACGGGCTGCTGCTGAGCACGGGCCAGAAGTGGTTCAGCAAGCGCAAGATCCTTACGCCCGCCTTTCACTTCAAGATCCTCGATCAGTTCATTGAGG GTTTCACAAGCAGAGCAGCATCCTGGCGGACCGGTTGCGGCCGGAAGCGAACGGGCAGCTGGTGAACATCTACCCat ]
[+] EMBL BM639185 [ ccgGCATCACGTCTCGTGCGGACCGCAGTGGTGATGGTGGTAGTTGTACAAATTGGGCTTGCCCTGCTGGTGGTGATCCTCACGATCAACTATCTGCTGGTGCG GCAAAACATAAAGTATGGCAGACACATCCCGGGACCGGTTCCGCTGCCGATAGTGGGCTGCTTCTACCTTTACATTAATTTAAAGCCCGAAGACATCATCGACTTCGTATCGGACCTGCGCAAACGGTACGGCAACTTGTTCCGCGTCTGGATCGGCAACCGGTTAGCGTTGTTCTGCACCAACGTGAAGTACAACGAGACGGTTCTGAGCAGCCAGAAGCTGATCCGCAAGAGCG AGCTGTACAAATTCCTTATCCCATGGCTGGGCGACGGGCTGCTGCTGAGCACGGGCCAGAAGTGGTTCGGCAAGCGTAAGATCCTTACGCCCGCCTTTCACTTCAAGATCCTCGATCAGTTCATCGAGGTGTTTCACAAGCAGAGCAGCATCCTGGCCGACCGGTTGCGGCCGGAAGCGAACGGGCAGCTGGTGAACATCTACCCGTTCGTGACGCTGGCGGCGCTGGACATCATCTGCGAAACGGCCATGGGTACCTCGATCAATGCAC ]
[+] EMBL BM596739 [ ccgGTCTCGTGCGGACCGCAGTGGTGATGGTGGTAGTTGTACAAATTGGGCTTGCCCTGCTGGTGGTGATCCTCACGATCAACTATCTGCTGGTGCG GCAAAACATAAAGTATGGCAGACACATCCCGGGACCGGTTCCGCTGCCGATAGTGGGCTGCTTCTACCTTTACATTAATTTAAAGCCCGAAGACATCATCGACTTCGTATCGGACCTGCGCAAACGGTACGGCAACTTGTTCCGCGTCTGGATCGGCAACCGGTTAGCGTTGTTCTGCACCAACGTGAAGTACAACGAGACGGTTCTGAGCAGCCAGAAGCTGATCCGCAAGAGCGAAGCTGTACAAATTCCTTATCCCATGGCTGGGCGACGGGCTGCTGCTGAGCACGGGCCAGAAGTGGTTCGGCAAGCGTAAGATCCTTACGCCCGCCTTTCACTTCAAGATCCTCGATCAGTTCATCGAGGTGTTTCACAAACAGAGCAGCATCCTGGCCGACCGGTTGCGGCCGGAAGCGAACGGGCAGCTGGTGAACATCTACCCGTTCGTGACGCTGGCGGCGCTGGACATCATCTGCGAAACGGCCATGGGTACCTCGATCAATGCACAGACCGATGCTGATTCGGCCTACGTGAAAGCGATCACGGAGCTG ]
[+] EMBL BM593504 [ ccgCTCGTGCGGACCGCAGTGGTGATGGTGGTAGTTGTACAAATTGGGCTTGCCCTGCTGGTGGTGATCCTCACGATCAACTATCTGCTGGTGCG GCAAAACATAAAGTATGGCAGACACATCCCGGGACCGGTTCCGCTGCCGATAGTGGGCTGCTTCTACCTTTACATTAATTTAAAGCCCGAAGACATCATCGACTTCGTATCGGACCTGCGCAAACGGTACGGCAACTTGTTCCGCGTCTGGATCGGCAACCGGTTAGCGTTGTTCTGCACCAACGTGAAGTACAACGAGACGGTTCTGAGCAGCCAGAAGCTGATCCGCAAGAGCG AGCTGTACAAATTCCTTATCCCATGGCTGGGCGACGGGCTGCTGCTGAGCACGGGCCAGAAGTGGTTCGGCAAGCGTAAGATCCTTACGCCCGCCTTTCACTTCAAGATCCTCGATCAGTTCATCGAGGTGTTTCACAAGCAGAGCAGCATCCTGGCCGACCGGTTGCGGCCGGAAGCGAACGGGCAGCTGGTGAACATCTACCCGTTCGTGACGCTGGCGGCGCTGGACATCATCTGCGAAACGGCCATGGGTACCTCGATCAATGCACAGACCGATGCTGATTCGGCCTACGTGAAAGCGATCACGGAGCTGAGCCTGGTGCTTACGGGCAGGTTCGTGAAGGTGTGGCAGCGTGTTGACTTTC ]
[+] EMBL BM613481 [ ccgGGTAGTTGTACAAATTGGGCTTGCCCTGCTGGTGGTGATCCTCACGATCAACTATCTGCTGGTGCGTGCAAAACATAAAGTATGGTAGACACATCCCGGGACCGGTTCCGCTGCCGATAGTGGGCTGCTTCTACCTTTACATTAATTTAAAGCCCGAAGACATCATCGACTTCGTATCGGACCTGCGGAAACGGTACGGAAACTTGTTCCGCGTCTGGATCGGCAACCGGTTAGCGTTGTTCTGCACCAACGTGAAGTACAACGAGACGGTTCTGAGCAGCCAGAAGCTGATCCGCAAGAGCG AGCTGTACAAATTCCTTATCCCATGGCTGGGCGACGGGCTGCTGCTGAGCACGGGCCAGAAGTGGTTCAGCAAGCGCAAGATCCTTACGCCCGCCTTTCACTTCAAGATCCTCGATCAGTTCATCGAGGTGTTTCACAAGCAGAGCAGCATCCTGGCCGACCGGTTGCGGCCGGAAGCGAACGGGCAGCTGGTGAACATCTACCCGTTCGTGACGCTGGCGGCGCTGGACATCATCTGCGAAACGGCCATGGGCACCTCGATCAATGCGCAGACCGATGCTGATTCGGCGTACGTGAAAGCGATCACGGAGCTGAGCCTGGTGCTTACGGGCAGGTTCGTGAAGGTGTGGCAGCGTGTTGACTTTCTGTTCAATCTGTCCCCGGA ]
[+] EMBL BX604152 [ ATGCACAGACCGATGCTGATTCGGCCTACGTGAAAGCGATCACGGAGCTGAGCCTGGTGCTTACGGGCAGGTTCGTGAAGGTGTGGCAGCGTGTTGACTTTCTGTTCAATCTGTCCCCGGACAAGCGGCGCCAGGATCGGATCATTAAGGTGCTGCATGATTTCACCACGAAGATCATACAATCGCGCCGCCGGGAGTTGATGGAGCAGGGTGGTGGTGGTGGTGGAACGGTCGAGGATGACGATA]
consensusID : consensus_7465#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence
[GCGTTATCGCGCAAATGTAGCGCAGATGTAATAGTGGCGTACAACCAACAAAACCTTTCATAGGCACACACACACACACACAGGCTCACCGTACTCGATCGATAGCGGGGTTAAAAACATTACATTGGATGGGTGTTCAGTACGGTGTTGTTAGTTTTTGTCCCTAGTCATCCACAGCATCACGTCTCGTGCGGACCGCAGTGGTGATGGTGGTAGTTGTACAAATTGGGCTTGCCCTGCTGGTGGTGATCCTCACGATCAACTATCTGCTGGTGCGGCAAAACATAAAGTATGGCAGACACATCCCGGGACCGGTTCCGCTGCCGATAGTGGGCTGCTTCTACCTTTACATTAATTTAAAGCCCGAAGGTACGCGACGGTTGGTTTGGGGGAGTGGTGGAAGAAGTTTCGCATCTTCGTGTAGTTTTAAGAGAACGGCCATGGGATGAATGCGGAAGCTTGTAAGGAAAGAAGTTCCGAACAAAGGGCAAACTGGAAGGTGTGTCTTTGGTAGCATCATCAACATCAATAGCAACATCAACAGTTCTAGTGCGTGTGTTCAGTGAGGTGTGCAAGTGGGGCTTGTTATCACGTTGCCAGGCAAATAGGCCTGTAAGTTAGCGCACACTCGTGGCATAGAAG]
[-] EMBL BX620510 [GCGTTATCGCGCAAATGTAGCGCAGATGTAATAGTGGCGTACAACCAACAAAACCTTTCATAGGCACACACACACACACACAGGCTCACCGTACTCGATCGATAGCGGGGTTAAAAACATTACATTGGATGGGTGTTCAGTACGGTGTTGTTAGTTTTTGTCCCTAGTCATCCACAGCATCACGTCTCGTGCGGACCGCAGTGGTGATGGTGGTAGTTGTACAAATTGGGCTTGCCCTGCTGGTGGTGATCCTCACGATCAACTATCTGCTGGTGCGGCAAAACATAAAGTATGGCAGACACATCCCGGGACCGGTTCCGCTGCCGATAGTGGGCTGCTTCTACCTTTACATTAATTTAAAGCCCGAAGGTACGCGACGGTTGGTTTGGGGGAGTGGTGGAAGAAGTTTCGCATCTTCGTGTAGTTTTAAGAGAACGGCCATGGGATGAATGCGGAAGCTTGTAAGGAAAGAAGTTCCGAACAAAGGGCAAACTGGAAGGTGTGTCTTTGGTAGCATCATCAACATCAATAGCAACATCAACAGTTCTAGTGCGTGTGTTCAGTGAGGTGTGCAAGTGGGGCTTGTTATCACGTTGCCAGGCAAATAGGCCTGTAAGTTAGCGCACACTCGTGGCATAGAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7465#0 --------------------------------------------CCGA--AAACCTTTCA 14
consensus_7465#1 GCGTTATCGCGCAAATGTAGCGCAGATGTAATAGTGGCGTACAACCAACAAAACCTTTCA 60
** * **********
consensus_7465#0 TACGCACACACACAC--------GCTCACCGTACTCGATCGATAGCGGGGTTAAAAACAT 66
consensus_7465#1 TAGGCACACACACACACACACAGGCTCACCGTACTCGATCGATAGCGGGGTTAAAAACAT 120
** ************ *************************************
consensus_7465#0 TACATTCGATGGGTGTTCAGTGCGGTGTTGTTAGTTTTTGTCCCTAGTCATCCACAGCAT 126
consensus_7465#1 TACATTGGATGGGTGTTCAGTACGGTGTTGTTAGTTTTTGTCCCTAGTCATCCACAGCAT 180
****** ************** **************************************
consensus_7465#0 CACGTCTCGTGCGGACCGCAGTGGTGATGGTGGTAGTTGTACAAATTGGGCTTGCCCTGC 186
consensus_7465#1 CACGTCTCGTGCGGACCGCAGTGGTGATGGTGGTAGTTGTACAAATTGGGCTTGCCCTGC 240
************************************************************
consensus_7465#0 TGGTGGTGATCCTCACGATCAACTATCTGCTGGTGCGGCAAAACATAAAGTATGGCAGAC 246
consensus_7465#1 TGGTGGTGATCCTCACGATCAACTATCTGCTGGTGCGGCAAAACATAAAGTATGGCAGAC 300
************************************************************
consensus_7465#0 ACATCCCGGGACCGGTTCCGCTGCCGATAGTGGGCTGCTTCTACCTTTACATTAATTTAA 306
consensus_7465#1 ACATCCCGGGACCGGTTCCGCTGCCGATAGTGGGCTGCTTCTACCTTTACATTAATTTAA 360
************************************************************
consensus_7465#0 AGCCCGAAGACAT-CATCGACTT-CGTATCGGACCTGCGCAAACGGTACGGCAACTTGTT 364
consensus_7465#1 AGCCCGAAGGTACGCGACGGTTGGTTTGGGGGAGTGGTGGAAGAAGTTTCGCATCTTCGT 420
********* * * ** * * *** * * ** ** *** *** *
consensus_7465#0 CCGCGTCTGGATCGGCAACCGGTTAGCGTTGTTCTGCACCAACGTGAAGTACAACGAGAC 424
consensus_7465#1 GTAGTTTTAAGAGAACGGCCA--TGGGATGAATGCGGAAGCTTGTAAGG------AAAGA 472
* * * ** * * * * * * ** * * *
consensus_7465#0 GGTTCTGAGCAGCCAGAAGCTGATCCGCAAGAGCGAGCTGTACAAATTCCTTATCCCATG 484
consensus_7465#1 AGTTCCGAACA---AAGGGCAAACTGGAAGGTGTGTCTTTGGTAGCATCATCAACAT-CA 528
**** ** ** * ** * * * * * * * * ** * * *
consensus_7465#0 GCTGGGCGACGGGCTGCTGCTGAGCACGGGCCAGAAGTGGTTCGGCAAGCGTAAGATCCT 544
consensus_7465#1 ATAGCAACATCAACAGTTCTAGTGCGTGTGTTCAGTGAGGTGTG-CAAGTGGGGCTTGTT 587
* * * * * * ** * * * *** * **** * * *
consensus_7465#0 TACGC-CCGCCTTTCACTTCAAGATCCTCGATCAGTTCATCGAGGTGTTTCACAAGCAGA 603
consensus_7465#1 ATCACGTTGCCAGGCAAAT-AGGCCTGTAAGTTAGCGCACACTCGTGGCATAGAAG---- 642
* * *** ** * * * * * ** ** *** * ***
consensus_7465#0 GCAGCATCCTGGCCGACCGGTTGCGGCCGGAAGCGAACGGGCAGCTGGTGAACATCTACC 663
consensus_7465#1 ------------------------------------------------------------
consensus_7465#0 CGTTCGTGACGCTGGCGGCGCTGGACATCATCTGCGAAACGGCCATGGGTACCTCGATCA 723
consensus_7465#1 ------------------------------------------------------------
consensus_7465#0 ATGCACAGACCGATGCTGATTCGGCCTACGTGAAAGCGATCACGGAGCTGAGCCTGGTGC 783
consensus_7465#1 ------------------------------------------------------------
consensus_7465#0 TTACGGGCAGGTTCGTGAAGGTGTGGCAGCGTGTTGACTTTCTGTTCAATCTGTCCCCGG 843
consensus_7465#1 ------------------------------------------------------------
consensus_7465#0 ACAAGCGGCGCCAGGATCGGATCATTAAGGTGCTGCATGATTTCACCACGAAGATCATAC 903
consensus_7465#1 ------------------------------------------------------------
consensus_7465#0 AATCGCGCCGCCGGGAGTTGATGGAGCAGGGTGGTGGTGGTGGTGGAACGGTCGAGGATG 963
consensus_7465#1 ------------------------------------------------------------
consensus_7465#0 ACGATA 969
consensus_7465#1 ------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||