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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7466#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1306 fasta sequence
[TCACACACGGAAGCAAAGCTACAACAAAAATAAGGTACGTGAATGGAAGAGCCAGCAAACGAGTGAAAACACAAGCAAGCAAACAAGCAAACAAACAATAAACTAGATGATGCGAAATGCGAAATTGGACAAACAGAAACACAAGCGATGAAAAACAAAAGAATGCGAGGGATATTGAAGCGATGTACGCTGCAGCAGCACAGGCCGGCATGGCGATGGCCGAGCATTTGACAGTGACACAACAACAAAACCCCCAATGAACACAGCACAGCTGGTAGCTAGCGGCCGTAACGTAACCCTATCTACAACCGTTACTTTTGAAAGGGCTGTTAAGTTCCATATATCCTTGTTGTGGTGTAACGCGGTGTTTGCAAATAAGTTAATTGAGCAACAAAAGTGGTATTCATTACCACGTGGTGGTCTGGTTCGGTTGTGAGGCGCAAGGCAGATGTTGTTCATCCACGACGGATGCAGCGAAATGCATGGATTTGGACTAATTTTGATAACTTATTCACTACGAAAATCAACCG-AGTGAGGCGTGCACGTGTTAGTAGAATTGATGCAACGGAATGCTTGCTTGATAGGACAGTTTAGTGTTTTACAGGGAGGATTTTTTTTTCTTTTCACAAGCACAACGGTCAGGCCTTAGTACTCGGCGAGTACATTTAGTATGGGTCTGTTGTATTTTTGTTACGAAAACAGAATAATGCTCTTCAAAGCTCATGTTATCCATTATGTTAACTGATTTATTGACAGTAACAACCGCACACATTCATATCCGTAAACACACAAACACACAAACACACACCCACACACACACACACACACACACAAACGCGAACATCGAAAACAAAGAATGAAAACACGGATCTAAATAGTTACGTAAGCATTCCGACACATACTAACTAATGCTGAATATTTCGATCACAACAATTACCTAGCGAATTGTGCAGTGTGCTGCAGGGAAGCCGCCATTTTCTACCACTGGAGAAATCCTAGGCCAGCTGACACACTCACGAATACACTCAACCACACACACACACACACAGATACACACCATACACACACACACATACTCACAGACGCACATCCAGACACGTTGAAGCCATTGGCAGGTGGACTCGGCTCGGCTTGTCGAGGGGCGCATGTCACGGACGTGGCTCACGCACGGCACCGGATGACAAACCGGTCGCCGTGCGCGATGCCGCCCCACGGAGCGAGAGCAGTGATACGGTAGGCAGGGAGGAAACGGGAGGGAAAGTTGCGGTGGCGGATGAACAAACCACTAAAGAAAACTGAATAACAT]
[+] EMBL BX608218 [TCACACACGGAAGCAAAGCTACAACAAAAATAAGGTACGTGAATGGAAGAGCCAGCAAACGAGTGAAAACACAAGCAAGCAAACAAGCAAACAAACAATAAACTAGATGATGCGAAATGCGAAATTGGACAAACAGAAACACAAGCGATGAAAAACAAAAGAATGCGAGGGATATTGAAGCGATGTACGCTGCAGCAGCACAGGCCGGCATGGCGATGGCCGAGCATTTGACAGTGACACAACAACAAAACCCCCAATGAACACAGCACAGCTGGTAGCTAGCGGCCGTAACGTAACCCTATCTACAACCGTTACTTTTGAAAGGGCTGTTAAGTTCCATATATCCTTGTTGTGGTGTAACGCGGTGTTTGCAAATAAGTTAATTGAGCAACAAAAGTGGTATTCATTACCACGTGGTGGTCTGGTTCGGTTGTGAGGCGCAAGGCAGATGTTGTTCATCCACGACGGATGCAGCGAAATGCATGGATTTGGACTAATTTTGATAACTTATTCACTACGAAAATCAACCGAACTGAGGCGTGCACGTGTTAGTAGAATTGATGCAACGGAATGCTTGCTTGATAGGACAGTTTAGTGTTTTACAGGGAGGATTTTTTTTTCTTTTCACAAGCACAACGGTCAGGCCTTAGTACTCGGCGAGTACATTTAGTATGG ]
[+] EMBL BX626662 [ AAATTGGACAAACAGAAACACAAGCGATGAAAAACAAAAGAATGCGAGGGATATTGAAGCGATGTACGCTGCAGCAGCACAGGCCGGCATGGCGATGGCCGAGCATTTGACAGTGACACAACAACAAAACCCCCAATGAACACAGCACAGCTGGTAGCTAGCGGCCGTAACGTAACCCTATCTACAACCGTTACTTTTGAAAGGGCTGTTAAGTTCCATATATCCTTGTTGTGGTGTAACGCGGTGTTTGCAAATAAGTTAATTGAGCAACAAAAGTGGTATTCATTACCACGTGGTGGTCTGGTTCGGTTGTGAGGCGCAAGGCAGATGTTGTTCATCCACGACGGATGCAGCGAAATGCATGGATTTGGACTAATTTTGATAACTTATTCACTACGAAAATCAACCG AGTGAGGCGTGCACGTGTTAGTAGAATTGATGCAACGGAATGCTTGCTTGATAGGACAGTTTAGTGTTTTACAGGGAGGATTTTTTTTTCTTTTCACAAGCACAACGGTCAGGCCTTAGTACTCGGCGAGTACATTTAGTATGGGTCTGT ]
[+] EMBL BX612787 [ TAAGTTAATTGAGCAACAAAAGTGGTATTCATTACCACGTGGTGGTCTGGTTCGGTTGTGAGGCGCAAGGCAGATGTTGTTCATCCACGACGGATGCAGCGAAATGCATGGATTTGGACTAATTTTGATAACTTATTCACTACGAAAATCAACCG AGTGAGGCGTGCACGTGTTAGTAGAATTGATGCAACGGAATGCTTGCTTGATAGGACAGTTTAGTGTTTTACAGGGAGGATTTTTTTTTCTTTTCACAAGCACAACGGTCAGGCCTTAGTACTCGGCGAGTACATTTAGTATGGTTCTGTTGTATTTTTGTTACGAAAACAGAATAATGCTCTTCAAAGCTCATGTTATCCATTATGTTAACTGATTTATTGACAGTAACAACCGCACACATTCATATCCGTAAACACACAAACACACAAACACACACCCACACACACACACACACACACACAAACGCGAACATCGAAAACAAAGAATGAAAACACGGATCTAAATAGTTACGTAAGCATTCCGACACATACTAACTAATGCTGAATATTTCGATCACAACAATTACCTAGCGAATTGTGCAGTGTGCTGCAGGGAAGCCGCCATTTTCTACCACTGGAGAAATCCTAGGCCAGCTGACACACTCACGAATACACTCAACCACACACACACACACACAGATACACACCATACACACACACACATACTCACAGACGCACATCCAGACACGTTGAAGCCATTGGCAGGTGGACTC ]
[+] EMBL BM653675 [ ccgATTTCGATCACAACAATTACCTAGCGAATTGTGCAGTGTGCTGCAGGGAAGCCGCCATTTTCTACCACTGGAGAAATCCTAGGCCAGCTGACACACTCACGAATACACTCACCCACACACACACACACACAGATACACACCAT ACACACACACATACTCACAGACGCACATCCAGACACGTTGAAGCCATTGGCAGGTGGACTCGGCTCGGCTTGTCGAGGGGCGCATGTCACGGACGTGGCTCACGCACGGCACCGGATGACAAACCGGTCGCCGTGCGCGATGCCGCCCCACGGAGCGAGAGCAGTGATACGGTAGGCAGGGAGGAAACGGGAGGGAAAGTTGCGGTGGCGGATGAACAAACCACTAAAGAAAACTGAATAACAT]
consensusID : consensus_7466#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1060 fasta sequence
[GCTACACCTACCGTGCGATATAACTGGTCTTGACCTTCACCTCTCAACATGCCGGAGTTGACTGAAATTACGGAAAGTGCGGCCGCCGCCTCCAGCGGAACCACAGAAGCCAAGCTGGAAGATGCCCTCAGTGACACAGAGACCGAGGATTCTATCCCGGATCTGGAAGATGCAGGTGCCGCTGCAACGACACAGCTGTCCGCCGGTGAAATCCCGGATATCTCGAAAGCGAAACAGTCGCGCGGCGAGAAGAAGGCCCGCAAGATCATGTCCAAGCTCGGACTGAAGCCGGTCCAGGGCGTCAACCGGGTAACGATCCGGAAGTCCAAGAACATCCTGTTCGTGATAAACAACCCGGACGTGTACAAGAACCCGCACAGCGACACCTACATCATCTTCGGCGAGGCCAAGATCGAGGATCTCACCCAGCAGGCGCAGGTGGCGGCGGCGGAGAAGTTCAAGGCGCCGGAAGCGACACCGGCCGCCGGCGAGGCGTCGAGCTCGACGAACGT-GTAGACCCCGATCGCCGAGGAGGACGAGGAGGAGGTGGACGATACCGGCATCGACGACAAGGACATCGATCTGGTCATGTCCCAGGCGAACGTGAAA-GTGGCAAAGGCCATCCGCGCGCTCAAGAACAATGAAAACGACATCGTGAGCACACGTGCGTGGAAAATACGTTACAACGGACACATTACATCCCCCACTTCTTCGTGCGCGCTTGTGTCGCCTGTTGCAGGGCGTTTCTGGATTTTGGAAGGAAACTAATCTGGTGTCCTGGAAAAGATGTCGATTGCAACAGGCACAAGGGTGAAGCGAATGTGCGTGTATGTGTGTGTGCGCAA-CGCGAAAGAGACTGCCTTTTTTGGCGC-AGGCGTTTTGCGTGCGCATCCTCGTTCGCGTGTTTGATATTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCGGCTGCACCTTCATTAA-CCCTCTAACATTACATCAAGTAAAACCCAATGCTAAGATTATATCGTAAACCGTAATAAAACCTAAACCTACAAAAGAGAAATTAAAAAAAAAAAAAAAAA]
[+] EMBL CNS08Q2X [GCTACACCTACCGTGCGATATAACTGGTCTTGACCTTCACCTCTCAACATGCCGGAGTTGACTGAAATTACGGAAAGTGCGGCCGCCGCCTCCAGCGGAACCACAGAAGCCAAGCTGGAAGATGCCCTCAGTGACACAGAGACCGAGGATTCTATCCCGGATCTGGAAGATGCAGGTGCCGCTGCAACGACACAGCTGTCCGCCGGTGAAATCCCGGATATCTCGAAAGCGAAACAGTCGCGCGGCGAGAAGAAGGCCCGCAAGATCATGTCCAAGCTCGGACTGAAGCCGGTCCAGGGCGTCAACCGGGTAACGATCCGGAAGTCCAAGAACATCCTGTTCGTGATAAACAACCCGGACGTGTACAAGAACCCGCACAGCGACACCTACATCATCTTCGGCGAGGCCAAGATCGAGGATCTCACCCAGCAGGCGCAGGTGGCGGCGGCGGAGAAGTTCAAGGCGCCGGAAGCGACACCGGCCGCCGGCGAGGCGTCGAGCTCGACGAACGT GTAGACCCCGATCGCCGAGGAGGACGAGGAGGAGGTGGACGATACCGGCATCGACGACAAGGACATCGATCTGGTCATGTCCCAGGCGAACGTGAAA GTGGCAAAGGCCATCCGCGCGCTCAAGAACAATGAAAACGACATCGTGAGCACACGTGCGTGGAAAATACGTTACAACGGACACATTACATCCCCCACTTCTTCGTGCGCGCTTGTGTCGCCTGTTGCAGGGCGTTTCTGGATTTTGGAAGGAAACTAATCTGGTGTCCTGGAAAAGATGTCGATTGCAACAGGCACAAGGGTGAAGCGAATGTGCGTGTATGTGTGTGTGCGCAA CGCGAAAGAGACTGCCTTTTTTGGCGC AGGCGTTTTGCGTGCGCATCCTCGTTCGCGTGTTTGATATTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCGGCTGCACCTTCATTAA CCCTCTAACATTACATCAAG ]
[-] EMBL CNS08Q2Y [ aaACCTACATCATTTTCGGCGAGGCCAAGATCGAGGTTTTCACCCAGCAGGCGCAGGTGGCGGCGGCGGAGAAGTTCAAGGCGCCGGAAGCGACACCGGCCGCCGGCGAGGCGTCGAGCTCGACGAACGTCGT GACCCCGATCGCCGAGGAGGACGAGGAGGAGGTGGACGATACCGGCATCGACGACAAGGACATCGATCTGGTCATGTCCCAGGCGAACGTGAAACGT GCAAAGGCCATCCGCGCGCTCAAGAACAATGAAAACGACATCGTGGGCAAACGTGCGTGGAAAATACGTTACAACGGACACATTACATCCCCCACTTCTTCGTGCGCGCTTTTTTCCCCTGTTGCAGGGCGTTTCTGGATTTTGGAAGGAAACTAATCTGGTGTCCTGG AAAGATGTCGATTGCAACAGGCACAAGGGTGAAGCGAATGTGCGTGTATGTGTGTGTGCGCAAGCGCGAAAGAAACTGCCTTTTTTGGCGCAAGGCGTTTTGCGTGCGCATCCTCGTTCGCGTGTTTGATATTGTTGTTGTTGCTGCTGCTGCTGCTGCTGC GCTGCACCTTCATTAACCCCTCTAACATTACATCAAGTAAAACCCAATGCTAAGATTATATCGTAAACCGTAATAAAACCTAAACCTACAAAAGAGAAATTAAAAAAAAAAAAAAAAA]
consensusID : consensus_7466#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 151 fasta sequence
[GGGTGGTATGTGTATTTTGTGTGTGAGGTGGTGAGGATGCAACAAAGCAGGGCATGGGAAACAGAAAAAAGCAGTAGGCGGGTTCTGCTGGTCACCACGCTCTAAAACTATTCGCGTACGTTCAATATGCTGCTGCACCGCATCATCACCA]
[+] EMBL CNS09Q60 [GGGTGGTATGTGTATTTTGTGTGTGAGGTGGTGAGGATGCAACAAAGCAGGGCATGGGAAACAGAAAAAAGCAGTAGGCGGGTTCTGCTGGTCACCACGCTCTAAAACTATTCGCGTACGTTCAATATGCTGCTGCACCGCATCATCACCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7466#0 TCACACACGGAAGCAAAGCTACAACAAAAATAAGGTACGTGAATGGAAGAGCCAGCAAAC 60
consensus_7466#2 ------------------------------------------------------------
consensus_7466#1 ---------------------------------------------------GCTACACCT 9
consensus_7466#0 GAGTGAAAACACAAGCAAGCAAACAAGCAAACAAACAATAAACTAGATGATGCGAAATGC 120
consensus_7466#2 --------------------------------GGGTGGTATG-TGTATTTTGTGTG-TGA 26
consensus_7466#1 ACCGTGCGATATAACTGGTCTTGACCTTCACCTCTCAACATGCCGGA-GTTGACTG--AA 66
* * **
consensus_7466#0 GAAATTGGACAAACAGAAACACAAGCGATGAAAAACAAAAGAATGCGAGGGATATTGAAG 180
consensus_7466#2 GGTGGTGAGGATGCAACAAAGCAGGGCATGGGAAACAGAAAAAAGCAGTAGGCG----GG 82
consensus_7466#1 ATTACGGAAAGTGCGGCCGCCGCCTCCAGCGGAACCACAGAAGCCAAGCTGGAA--GATG 124
* * * ** ** * * * *
consensus_7466#0 CGATGTACGCTGCAGCAGCACAGGCCGGCATGGCGATGGCCGAGCATTTGACAGT-GACA 239
consensus_7466#2 TTCTGCTGGTCACCACGCTCTAAAACTAT-TCGCGTACGTTCAATATGCTGCTGC-ACCG 140
consensus_7466#1 CCCTCAGTGACACAGAGACCGAGGATTCTATCCCGGATCTGGAAGATGCAGGTGCCGCTG 184
* * * * * ** * ** *
consensus_7466#0 CAACAACAAAACCCCCAATGAACACAGCACAGCTGGTAGCTAGCGGCCGTAACGTAACCC 299
consensus_7466#2 CATCATCACCA------------------------------------------------- 151
consensus_7466#1 CAACGACACAGCTGTCCGCCGGTGAAATCCCG--GATATCTCGAAAGCGAAACAGTCGCG 242
** * **
consensus_7466#0 TATCTACAACCGTTACTTTTGAAAGGGCTGTTAAGTTCCATATATCCTTGTTGTGGTGTA 359
consensus_7466#2 ------------------------------------------------------------
consensus_7466#1 CGGCGAGAAG-AAGGCCCGCAAGATCATGTCCAAGCTCGGACTGAAGCCGGTCCAGGGCG 301
consensus_7466#0 ACGCGGTGTTTGCAAATAAGTTAATTGAGCAACAAAAGTGGTATTCATTACCACGTGGTG 419
consensus_7466#2 ------------------------------------------------------------
consensus_7466#1 TCAACCGGGTAACGATCCGGAAGTCCAAGAACATCCTGTTCGTGATAAACAACCCGGACG 361
consensus_7466#0 GTCTGGTTCGGTTGTGAGGCGCAAGGCAGATGTTGTTCATCCACGACGGATGCAGCGAAA 479
consensus_7466#2 ------------------------------------------------------------
consensus_7466#1 TGTACAAGAACCCGCACAGCGACACCTACATCATCTTCGGCGAGGCCAAGATCGAGGATC 421
consensus_7466#0 TGCATGGATTTGGACTAATTTTGATAACTTATTCACTACGAAAATCAACCGAGTGAGGCG 539
consensus_7466#2 ------------------------------------------------------------
consensus_7466#1 TCACCCAGCAGGCGCAGGTGGCGGCGGCGGAGAAGTTCAAGGCGCCGG--AAGCGACACC 479
consensus_7466#0 TGCACGTGTTAGTAGAATTGATGCAACGGAATGCTTGCTTGATAGGACAGTTTAGTGTTT 599
consensus_7466#2 ------------------------------------------------------------
consensus_7466#1 GGCCGCCGGCGAGGCGTCGAGCTCGACGAACGTGTAGACCCCGATCGCCGAGGAGGACGA 539
consensus_7466#0 TACAGGGAGGATTTTTTTTTCTTTTCACAAGCACAACGGTCAGGCCTTAGTACTCGGCGA 659
consensus_7466#2 ------------------------------------------------------------
consensus_7466#1 GGAGGAGGTGGACGATACCGGCATCGACGACAAGGACATCGATCTGGTCATGTCCCAGGC 599
consensus_7466#0 GTACATTTAGTATGGGTCTGTTGTATTTTTGTTACGAAAACAGAATAATGCTCTTCAAAG 719
consensus_7466#2 ------------------------------------------------------------
consensus_7466#1 GAACGTGAAAGTGGCAAAGGCCATCCGCGCGCTCAAGAACAATGAAAACGACATCGTGAG 659
consensus_7466#0 CTCATGT---TATCCATTATGTTA--ACTGATTTATTGACAGTAACAACCGCACACATTC 774
consensus_7466#2 ------------------------------------------------------------
consensus_7466#1 CACACGTGCGTGGAAAATACGTTACAACGGACACATTACATCCCCCACTTCTTCGTGCGC 719
consensus_7466#0 ATATCCGTAAACACACAAACACACAAACACACACCCACACACACACACACACACACACAA 834
consensus_7466#2 ------------------------------------------------------------
consensus_7466#1 GCTTGTGTCGCCTGTTGCAGGGCGTTTCTGGATTTTGGAAGGAAACTAATCTGGTGTCCT 779
consensus_7466#0 ACGCGAACATCGAAAACAAAGAATGAAAACACGGATCTAAATAGTTACGTAAGCATTCCG 894
consensus_7466#2 ------------------------------------------------------------
consensus_7466#1 GGAAAAGATGTCGATTGCAACAGGCACAAGGGTGAAGCGAATGTGCGTGTATGTGTGTGT 839
consensus_7466#0 ACACATACTAACTAATGCTGAATATTTCGATCACAACAATTACCTAGCGAATTGTGCAGT 954
consensus_7466#2 ------------------------------------------------------------
consensus_7466#1 GCGCAACGCGAAAGAGACTGCCTTTTTTGGCGCAGGCGTTTTGCGTGCGCATCCTCGTTC 899
consensus_7466#0 GTGCTGCAGGGAAGCCGCCATTTTCTACCACTGGAGAAATCCTAGGCCAGCTGACACACT 1014
consensus_7466#2 ------------------------------------------------------------
consensus_7466#1 GCGTGTTTGATATTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCGGCTGCACCTTCATTAA 959
consensus_7466#0 CACGAATACACTCAACCACACACACACACACACAGATACACACCATACACACACACACAT 1074
consensus_7466#2 ------------------------------------------------------------
consensus_7466#1 CCCTCTAACATTACATCAAGTAAAACCCAATGCTAAGATTATATCGTAAACCGTAATAAA 1019
consensus_7466#0 ACTCACAGACGCACATCCAGACACGTTGAAGCCATTGGCAGGTGGACTCGGCTCGGCTTG 1134
consensus_7466#2 ------------------------------------------------------------
consensus_7466#1 ACCTAAACCTACAAAAGAGAAATTAAAAAAAAAAAAAAAAA------------------- 1060
consensus_7466#0 TCGAGGGGCGCATGTCACGGACGTGGCTCACGCACGGCACCGGATGACAAACCGGTCGCC 1194
consensus_7466#2 ------------------------------------------------------------
consensus_7466#1 ------------------------------------------------------------
consensus_7466#0 GTGCGCGATGCCGCCCCACGGAGCGAGAGCAGTGATACGGTAGGCAGGGAGGAAACGGGA 1254
consensus_7466#2 ------------------------------------------------------------
consensus_7466#1 ------------------------------------------------------------
consensus_7466#0 GGGAAAGTTGCGGTGGCGGATGAACAAACCACTAAAGAAAACTGAATAACAT 1306
consensus_7466#2 ----------------------------------------------------
consensus_7466#1 ----------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||