These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7466#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1306 fasta sequence [TCACACACGGAAGCAAAGCTACAACAAAAATAAGGTACGTGAATGGAAGAGCCAGCAAACGAGTGAAAACACAAGCAAGCAAACAAGCAAACAAACAATAAACTAGATGATGCGAAATGCGAAATTGGACAAACAGAAACACAAGCGATGAAAAACAAAAGAATGCGAGGGATATTGAAGCGATGTACGCTGCAGCAGCACAGGCCGGCATGGCGATGGCCGAGCATTTGACAGTGACACAACAACAAAACCCCCAATGAACACAGCACAGCTGGTAGCTAGCGGCCGTAACGTAACCCTATCTACAACCGTTACTTTTGAAAGGGCTGTTAAGTTCCATATATCCTTGTTGTGGTGTAACGCGGTGTTTGCAAATAAGTTAATTGAGCAACAAAAGTGGTATTCATTACCACGTGGTGGTCTGGTTCGGTTGTGAGGCGCAAGGCAGATGTTGTTCATCCACGACGGATGCAGCGAAATGCATGGATTTGGACTAATTTTGATAACTTATTCACTACGAAAATCAACCG-AGTGAGGCGTGCACGTGTTAGTAGAATTGATGCAACGGAATGCTTGCTTGATAGGACAGTTTAGTGTTTTACAGGGAGGATTTTTTTTTCTTTTCACAAGCACAACGGTCAGGCCTTAGTACTCGGCGAGTACATTTAGTATGGGTCTGTTGTATTTTTGTTACGAAAACAGAATAATGCTCTTCAAAGCTCATGTTATCCATTATGTTAACTGATTTATTGACAGTAACAACCGCACACATTCATATCCGTAAACACACAAACACACAAACACACACCCACACACACACACACACACACACAAACGCGAACATCGAAAACAAAGAATGAAAACACGGATCTAAATAGTTACGTAAGCATTCCGACACATACTAACTAATGCTGAATATTTCGATCACAACAATTACCTAGCGAATTGTGCAGTGTGCTGCAGGGAAGCCGCCATTTTCTACCACTGGAGAAATCCTAGGCCAGCTGACACACTCACGAATACACTCAACCACACACACACACACACAGATACACACCATACACACACACACATACTCACAGACGCACATCCAGACACGTTGAAGCCATTGGCAGGTGGACTCGGCTCGGCTTGTCGAGGGGCGCATGTCACGGACGTGGCTCACGCACGGCACCGGATGACAAACCGGTCGCCGTGCGCGATGCCGCCCCACGGAGCGAGAGCAGTGATACGGTAGGCAGGGAGGAAACGGGAGGGAAAGTTGCGGTGGCGGATGAACAAACCACTAAAGAAAACTGAATAACAT] [+] EMBL BX608218 [TCACACACGGAAGCAAAGCTACAACAAAAATAAGGTACGTGAATGGAAGAGCCAGCAAACGAGTGAAAACACAAGCAAGCAAACAAGCAAACAAACAATAAACTAGATGATGCGAAATGCGAAATTGGACAAACAGAAACACAAGCGATGAAAAACAAAAGAATGCGAGGGATATTGAAGCGATGTACGCTGCAGCAGCACAGGCCGGCATGGCGATGGCCGAGCATTTGACAGTGACACAACAACAAAACCCCCAATGAACACAGCACAGCTGGTAGCTAGCGGCCGTAACGTAACCCTATCTACAACCGTTACTTTTGAAAGGGCTGTTAAGTTCCATATATCCTTGTTGTGGTGTAACGCGGTGTTTGCAAATAAGTTAATTGAGCAACAAAAGTGGTATTCATTACCACGTGGTGGTCTGGTTCGGTTGTGAGGCGCAAGGCAGATGTTGTTCATCCACGACGGATGCAGCGAAATGCATGGATTTGGACTAATTTTGATAACTTATTCACTACGAAAATCAACCGAACTGAGGCGTGCACGTGTTAGTAGAATTGATGCAACGGAATGCTTGCTTGATAGGACAGTTTAGTGTTTTACAGGGAGGATTTTTTTTTCTTTTCACAAGCACAACGGTCAGGCCTTAGTACTCGGCGAGTACATTTAGTATGG ] [+] EMBL BX626662 [ AAATTGGACAAACAGAAACACAAGCGATGAAAAACAAAAGAATGCGAGGGATATTGAAGCGATGTACGCTGCAGCAGCACAGGCCGGCATGGCGATGGCCGAGCATTTGACAGTGACACAACAACAAAACCCCCAATGAACACAGCACAGCTGGTAGCTAGCGGCCGTAACGTAACCCTATCTACAACCGTTACTTTTGAAAGGGCTGTTAAGTTCCATATATCCTTGTTGTGGTGTAACGCGGTGTTTGCAAATAAGTTAATTGAGCAACAAAAGTGGTATTCATTACCACGTGGTGGTCTGGTTCGGTTGTGAGGCGCAAGGCAGATGTTGTTCATCCACGACGGATGCAGCGAAATGCATGGATTTGGACTAATTTTGATAACTTATTCACTACGAAAATCAACCG AGTGAGGCGTGCACGTGTTAGTAGAATTGATGCAACGGAATGCTTGCTTGATAGGACAGTTTAGTGTTTTACAGGGAGGATTTTTTTTTCTTTTCACAAGCACAACGGTCAGGCCTTAGTACTCGGCGAGTACATTTAGTATGGGTCTGT ] [+] EMBL BX612787 [ TAAGTTAATTGAGCAACAAAAGTGGTATTCATTACCACGTGGTGGTCTGGTTCGGTTGTGAGGCGCAAGGCAGATGTTGTTCATCCACGACGGATGCAGCGAAATGCATGGATTTGGACTAATTTTGATAACTTATTCACTACGAAAATCAACCG AGTGAGGCGTGCACGTGTTAGTAGAATTGATGCAACGGAATGCTTGCTTGATAGGACAGTTTAGTGTTTTACAGGGAGGATTTTTTTTTCTTTTCACAAGCACAACGGTCAGGCCTTAGTACTCGGCGAGTACATTTAGTATGGTTCTGTTGTATTTTTGTTACGAAAACAGAATAATGCTCTTCAAAGCTCATGTTATCCATTATGTTAACTGATTTATTGACAGTAACAACCGCACACATTCATATCCGTAAACACACAAACACACAAACACACACCCACACACACACACACACACACACAAACGCGAACATCGAAAACAAAGAATGAAAACACGGATCTAAATAGTTACGTAAGCATTCCGACACATACTAACTAATGCTGAATATTTCGATCACAACAATTACCTAGCGAATTGTGCAGTGTGCTGCAGGGAAGCCGCCATTTTCTACCACTGGAGAAATCCTAGGCCAGCTGACACACTCACGAATACACTCAACCACACACACACACACACAGATACACACCATACACACACACACATACTCACAGACGCACATCCAGACACGTTGAAGCCATTGGCAGGTGGACTC ] [+] EMBL BM653675 [ ccgATTTCGATCACAACAATTACCTAGCGAATTGTGCAGTGTGCTGCAGGGAAGCCGCCATTTTCTACCACTGGAGAAATCCTAGGCCAGCTGACACACTCACGAATACACTCACCCACACACACACACACACAGATACACACCAT ACACACACACATACTCACAGACGCACATCCAGACACGTTGAAGCCATTGGCAGGTGGACTCGGCTCGGCTTGTCGAGGGGCGCATGTCACGGACGTGGCTCACGCACGGCACCGGATGACAAACCGGTCGCCGTGCGCGATGCCGCCCCACGGAGCGAGAGCAGTGATACGGTAGGCAGGGAGGAAACGGGAGGGAAAGTTGCGGTGGCGGATGAACAAACCACTAAAGAAAACTGAATAACAT] consensusID : consensus_7466#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1060 fasta sequence [GCTACACCTACCGTGCGATATAACTGGTCTTGACCTTCACCTCTCAACATGCCGGAGTTGACTGAAATTACGGAAAGTGCGGCCGCCGCCTCCAGCGGAACCACAGAAGCCAAGCTGGAAGATGCCCTCAGTGACACAGAGACCGAGGATTCTATCCCGGATCTGGAAGATGCAGGTGCCGCTGCAACGACACAGCTGTCCGCCGGTGAAATCCCGGATATCTCGAAAGCGAAACAGTCGCGCGGCGAGAAGAAGGCCCGCAAGATCATGTCCAAGCTCGGACTGAAGCCGGTCCAGGGCGTCAACCGGGTAACGATCCGGAAGTCCAAGAACATCCTGTTCGTGATAAACAACCCGGACGTGTACAAGAACCCGCACAGCGACACCTACATCATCTTCGGCGAGGCCAAGATCGAGGATCTCACCCAGCAGGCGCAGGTGGCGGCGGCGGAGAAGTTCAAGGCGCCGGAAGCGACACCGGCCGCCGGCGAGGCGTCGAGCTCGACGAACGT-GTAGACCCCGATCGCCGAGGAGGACGAGGAGGAGGTGGACGATACCGGCATCGACGACAAGGACATCGATCTGGTCATGTCCCAGGCGAACGTGAAA-GTGGCAAAGGCCATCCGCGCGCTCAAGAACAATGAAAACGACATCGTGAGCACACGTGCGTGGAAAATACGTTACAACGGACACATTACATCCCCCACTTCTTCGTGCGCGCTTGTGTCGCCTGTTGCAGGGCGTTTCTGGATTTTGGAAGGAAACTAATCTGGTGTCCTGGAAAAGATGTCGATTGCAACAGGCACAAGGGTGAAGCGAATGTGCGTGTATGTGTGTGTGCGCAA-CGCGAAAGAGACTGCCTTTTTTGGCGC-AGGCGTTTTGCGTGCGCATCCTCGTTCGCGTGTTTGATATTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCGGCTGCACCTTCATTAA-CCCTCTAACATTACATCAAGTAAAACCCAATGCTAAGATTATATCGTAAACCGTAATAAAACCTAAACCTACAAAAGAGAAATTAAAAAAAAAAAAAAAAA] [+] EMBL CNS08Q2X [GCTACACCTACCGTGCGATATAACTGGTCTTGACCTTCACCTCTCAACATGCCGGAGTTGACTGAAATTACGGAAAGTGCGGCCGCCGCCTCCAGCGGAACCACAGAAGCCAAGCTGGAAGATGCCCTCAGTGACACAGAGACCGAGGATTCTATCCCGGATCTGGAAGATGCAGGTGCCGCTGCAACGACACAGCTGTCCGCCGGTGAAATCCCGGATATCTCGAAAGCGAAACAGTCGCGCGGCGAGAAGAAGGCCCGCAAGATCATGTCCAAGCTCGGACTGAAGCCGGTCCAGGGCGTCAACCGGGTAACGATCCGGAAGTCCAAGAACATCCTGTTCGTGATAAACAACCCGGACGTGTACAAGAACCCGCACAGCGACACCTACATCATCTTCGGCGAGGCCAAGATCGAGGATCTCACCCAGCAGGCGCAGGTGGCGGCGGCGGAGAAGTTCAAGGCGCCGGAAGCGACACCGGCCGCCGGCGAGGCGTCGAGCTCGACGAACGT GTAGACCCCGATCGCCGAGGAGGACGAGGAGGAGGTGGACGATACCGGCATCGACGACAAGGACATCGATCTGGTCATGTCCCAGGCGAACGTGAAA GTGGCAAAGGCCATCCGCGCGCTCAAGAACAATGAAAACGACATCGTGAGCACACGTGCGTGGAAAATACGTTACAACGGACACATTACATCCCCCACTTCTTCGTGCGCGCTTGTGTCGCCTGTTGCAGGGCGTTTCTGGATTTTGGAAGGAAACTAATCTGGTGTCCTGGAAAAGATGTCGATTGCAACAGGCACAAGGGTGAAGCGAATGTGCGTGTATGTGTGTGTGCGCAA CGCGAAAGAGACTGCCTTTTTTGGCGC AGGCGTTTTGCGTGCGCATCCTCGTTCGCGTGTTTGATATTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCGGCTGCACCTTCATTAA CCCTCTAACATTACATCAAG ] [-] EMBL CNS08Q2Y [ aaACCTACATCATTTTCGGCGAGGCCAAGATCGAGGTTTTCACCCAGCAGGCGCAGGTGGCGGCGGCGGAGAAGTTCAAGGCGCCGGAAGCGACACCGGCCGCCGGCGAGGCGTCGAGCTCGACGAACGTCGT GACCCCGATCGCCGAGGAGGACGAGGAGGAGGTGGACGATACCGGCATCGACGACAAGGACATCGATCTGGTCATGTCCCAGGCGAACGTGAAACGT GCAAAGGCCATCCGCGCGCTCAAGAACAATGAAAACGACATCGTGGGCAAACGTGCGTGGAAAATACGTTACAACGGACACATTACATCCCCCACTTCTTCGTGCGCGCTTTTTTCCCCTGTTGCAGGGCGTTTCTGGATTTTGGAAGGAAACTAATCTGGTGTCCTGG AAAGATGTCGATTGCAACAGGCACAAGGGTGAAGCGAATGTGCGTGTATGTGTGTGTGCGCAAGCGCGAAAGAAACTGCCTTTTTTGGCGCAAGGCGTTTTGCGTGCGCATCCTCGTTCGCGTGTTTGATATTGTTGTTGTTGCTGCTGCTGCTGCTGCTGC GCTGCACCTTCATTAACCCCTCTAACATTACATCAAGTAAAACCCAATGCTAAGATTATATCGTAAACCGTAATAAAACCTAAACCTACAAAAGAGAAATTAAAAAAAAAAAAAAAAA] consensusID : consensus_7466#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 151 fasta sequence [GGGTGGTATGTGTATTTTGTGTGTGAGGTGGTGAGGATGCAACAAAGCAGGGCATGGGAAACAGAAAAAAGCAGTAGGCGGGTTCTGCTGGTCACCACGCTCTAAAACTATTCGCGTACGTTCAATATGCTGCTGCACCGCATCATCACCA] [+] EMBL CNS09Q60 [GGGTGGTATGTGTATTTTGTGTGTGAGGTGGTGAGGATGCAACAAAGCAGGGCATGGGAAACAGAAAAAAGCAGTAGGCGGGTTCTGCTGGTCACCACGCTCTAAAACTATTCGCGTACGTTCAATATGCTGCTGCACCGCATCATCACCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7466#0 TCACACACGGAAGCAAAGCTACAACAAAAATAAGGTACGTGAATGGAAGAGCCAGCAAAC 60 consensus_7466#2 ------------------------------------------------------------ consensus_7466#1 ---------------------------------------------------GCTACACCT 9 consensus_7466#0 GAGTGAAAACACAAGCAAGCAAACAAGCAAACAAACAATAAACTAGATGATGCGAAATGC 120 consensus_7466#2 --------------------------------GGGTGGTATG-TGTATTTTGTGTG-TGA 26 consensus_7466#1 ACCGTGCGATATAACTGGTCTTGACCTTCACCTCTCAACATGCCGGA-GTTGACTG--AA 66 * * ** consensus_7466#0 GAAATTGGACAAACAGAAACACAAGCGATGAAAAACAAAAGAATGCGAGGGATATTGAAG 180 consensus_7466#2 GGTGGTGAGGATGCAACAAAGCAGGGCATGGGAAACAGAAAAAAGCAGTAGGCG----GG 82 consensus_7466#1 ATTACGGAAAGTGCGGCCGCCGCCTCCAGCGGAACCACAGAAGCCAAGCTGGAA--GATG 124 * * * ** ** * * * * consensus_7466#0 CGATGTACGCTGCAGCAGCACAGGCCGGCATGGCGATGGCCGAGCATTTGACAGT-GACA 239 consensus_7466#2 TTCTGCTGGTCACCACGCTCTAAAACTAT-TCGCGTACGTTCAATATGCTGCTGC-ACCG 140 consensus_7466#1 CCCTCAGTGACACAGAGACCGAGGATTCTATCCCGGATCTGGAAGATGCAGGTGCCGCTG 184 * * * * * ** * ** * consensus_7466#0 CAACAACAAAACCCCCAATGAACACAGCACAGCTGGTAGCTAGCGGCCGTAACGTAACCC 299 consensus_7466#2 CATCATCACCA------------------------------------------------- 151 consensus_7466#1 CAACGACACAGCTGTCCGCCGGTGAAATCCCG--GATATCTCGAAAGCGAAACAGTCGCG 242 ** * ** consensus_7466#0 TATCTACAACCGTTACTTTTGAAAGGGCTGTTAAGTTCCATATATCCTTGTTGTGGTGTA 359 consensus_7466#2 ------------------------------------------------------------ consensus_7466#1 CGGCGAGAAG-AAGGCCCGCAAGATCATGTCCAAGCTCGGACTGAAGCCGGTCCAGGGCG 301 consensus_7466#0 ACGCGGTGTTTGCAAATAAGTTAATTGAGCAACAAAAGTGGTATTCATTACCACGTGGTG 419 consensus_7466#2 ------------------------------------------------------------ consensus_7466#1 TCAACCGGGTAACGATCCGGAAGTCCAAGAACATCCTGTTCGTGATAAACAACCCGGACG 361 consensus_7466#0 GTCTGGTTCGGTTGTGAGGCGCAAGGCAGATGTTGTTCATCCACGACGGATGCAGCGAAA 479 consensus_7466#2 ------------------------------------------------------------ consensus_7466#1 TGTACAAGAACCCGCACAGCGACACCTACATCATCTTCGGCGAGGCCAAGATCGAGGATC 421 consensus_7466#0 TGCATGGATTTGGACTAATTTTGATAACTTATTCACTACGAAAATCAACCGAGTGAGGCG 539 consensus_7466#2 ------------------------------------------------------------ consensus_7466#1 TCACCCAGCAGGCGCAGGTGGCGGCGGCGGAGAAGTTCAAGGCGCCGG--AAGCGACACC 479 consensus_7466#0 TGCACGTGTTAGTAGAATTGATGCAACGGAATGCTTGCTTGATAGGACAGTTTAGTGTTT 599 consensus_7466#2 ------------------------------------------------------------ consensus_7466#1 GGCCGCCGGCGAGGCGTCGAGCTCGACGAACGTGTAGACCCCGATCGCCGAGGAGGACGA 539 consensus_7466#0 TACAGGGAGGATTTTTTTTTCTTTTCACAAGCACAACGGTCAGGCCTTAGTACTCGGCGA 659 consensus_7466#2 ------------------------------------------------------------ consensus_7466#1 GGAGGAGGTGGACGATACCGGCATCGACGACAAGGACATCGATCTGGTCATGTCCCAGGC 599 consensus_7466#0 GTACATTTAGTATGGGTCTGTTGTATTTTTGTTACGAAAACAGAATAATGCTCTTCAAAG 719 consensus_7466#2 ------------------------------------------------------------ consensus_7466#1 GAACGTGAAAGTGGCAAAGGCCATCCGCGCGCTCAAGAACAATGAAAACGACATCGTGAG 659 consensus_7466#0 CTCATGT---TATCCATTATGTTA--ACTGATTTATTGACAGTAACAACCGCACACATTC 774 consensus_7466#2 ------------------------------------------------------------ consensus_7466#1 CACACGTGCGTGGAAAATACGTTACAACGGACACATTACATCCCCCACTTCTTCGTGCGC 719 consensus_7466#0 ATATCCGTAAACACACAAACACACAAACACACACCCACACACACACACACACACACACAA 834 consensus_7466#2 ------------------------------------------------------------ consensus_7466#1 GCTTGTGTCGCCTGTTGCAGGGCGTTTCTGGATTTTGGAAGGAAACTAATCTGGTGTCCT 779 consensus_7466#0 ACGCGAACATCGAAAACAAAGAATGAAAACACGGATCTAAATAGTTACGTAAGCATTCCG 894 consensus_7466#2 ------------------------------------------------------------ consensus_7466#1 GGAAAAGATGTCGATTGCAACAGGCACAAGGGTGAAGCGAATGTGCGTGTATGTGTGTGT 839 consensus_7466#0 ACACATACTAACTAATGCTGAATATTTCGATCACAACAATTACCTAGCGAATTGTGCAGT 954 consensus_7466#2 ------------------------------------------------------------ consensus_7466#1 GCGCAACGCGAAAGAGACTGCCTTTTTTGGCGCAGGCGTTTTGCGTGCGCATCCTCGTTC 899 consensus_7466#0 GTGCTGCAGGGAAGCCGCCATTTTCTACCACTGGAGAAATCCTAGGCCAGCTGACACACT 1014 consensus_7466#2 ------------------------------------------------------------ consensus_7466#1 GCGTGTTTGATATTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCGGCTGCACCTTCATTAA 959 consensus_7466#0 CACGAATACACTCAACCACACACACACACACACAGATACACACCATACACACACACACAT 1074 consensus_7466#2 ------------------------------------------------------------ consensus_7466#1 CCCTCTAACATTACATCAAGTAAAACCCAATGCTAAGATTATATCGTAAACCGTAATAAA 1019 consensus_7466#0 ACTCACAGACGCACATCCAGACACGTTGAAGCCATTGGCAGGTGGACTCGGCTCGGCTTG 1134 consensus_7466#2 ------------------------------------------------------------ consensus_7466#1 ACCTAAACCTACAAAAGAGAAATTAAAAAAAAAAAAAAAAA------------------- 1060 consensus_7466#0 TCGAGGGGCGCATGTCACGGACGTGGCTCACGCACGGCACCGGATGACAAACCGGTCGCC 1194 consensus_7466#2 ------------------------------------------------------------ consensus_7466#1 ------------------------------------------------------------ consensus_7466#0 GTGCGCGATGCCGCCCCACGGAGCGAGAGCAGTGATACGGTAGGCAGGGAGGAAACGGGA 1254 consensus_7466#2 ------------------------------------------------------------ consensus_7466#1 ------------------------------------------------------------ consensus_7466#0 GGGAAAGTTGCGGTGGCGGATGAACAAACCACTAAAGAAAACTGAATAACAT 1306 consensus_7466#2 ---------------------------------------------------- consensus_7466#1 ---------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||