These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7473#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1391 fasta sequence [CCGCGGACGCGTGGGTTGGAGGAGTGCTCCCCACCATGAAGCTAGAAATGGAACAACAACAGCAGCAGCAACAACAGATGCAGGCCGCCGTACTGCCAACCGGTGCGCTGGCACAGCAGCAACTCCTACAGCTTCAACAGCAGCAGCAGCAGCAGCAGCAGGGTCTGCTACAGCCCGCCGCTGCCGGTATGGGACAAGCGCAAGCACCGGCTGCTATGTTGATTGCCGACGTTCCGGCCTCCCCATCGACGCCCGTAGCAGTGGCGGCTGCGGCAGCCGCTGCCGCTGCCGCTGCAGCAAATTCCGAGGAAGCGTCCTCCATCCTACGTTGGACGGTAAACGATGTGGGCGAGTTTATTCGGGGACTGCCCGGCTGTGCGGATTATGCGGAAGATTTCGTCAACCAGGAGATCGATGGTCAGGCTTTGTTGCTGCTGAAGGAGAACCATCTCGTCAGCACGATGGATATGAAGCTCGGCCCGGCACTGAAAATTGTGGCGCGAGTAAATCTCATGAAGGCGACGGTCGCTCCCGCGGACGGACAACAGCAAGCTGCACCGTAAGCTCGCTGCTGTGCTGTGGGTGGGCAATGTAAATATAGCTGTAGGGTAACTGTTTAAGCATCTGTTTACAAGCTAACGTTAGGCAACAATATTGGATTGTAGAGGAATGATAAGTGGAAGCGAAAGATTGAATTCTATTTGCTATCCGAGCGCGCTCGAAAAACGGGCGATCGGGAAACAAAACAAACAATTAATTTATTTTATCCATCGTCACTTGAGGCAGTTGTTAAGTTGTAAGAATTATAATTTTCTCCCGATTATTGCTTCTTGTCTACGGTGTAGGTAGAACTGATTAGTCTATCTTACGTCCAGTGTACACAAGGGATTTGTAGAAAAGGAGCAGTTTGTACTGAAATGAGTAGCATTTGATGTGACAATTTAAAGTAGAATGATATCGCTTGAAGTGGTGGCTAAGCGCATGGAGTAAATGCAGATTTCTCTCAGTAAACTGATTTTCAAAGAAACTCGCACCATTGCTCGAGTATGAATGTACATAGGTAGGTCTTAGGAAGCTTAACTAAGCATTTACAGTATCATCTATCGCCTAAGATAGAGACCATCGGCTTAAAGTTCGTTTACAAACAAATATGCAAAAAACAGGAGGCAAATCGATCCAACAAACAAATCTTCTACATTTAAAAAATGACCAATTCTGAAAAAATGCGCTAAAGAAACAAACAATGGAATACACAAAGTTAATGAACGTAATTACTTTCTAAGGAATAAACTTACTTTTTAGCTATAAAAGGCTAGGCGAGTAGTATCACTATAAGAAGGTTGCACGTGGTACAACGTGCAAGTAGTATACAACATGAATCATAAAGGTGT] [+] EMBL BM603195 [CCGCGGACGCGTGGGTTGGAGGAGTGCTCCCCACCATGAAGCTAGAAATGGAACAACAACAGCAGCAGCAACAACAGATGCAGGCCGCCGTACTGCCAACCGGTGCGCTGGCACAGCAGCAACTCCTACAGCTTCAACAGCAGCAGCAGCAGCAGCAGCAGGGTCTGCTACAGCCCGCCGCTGCCGGTATGGGACAAGCGCAAGCACCGGCTGCTATGTTGATTGCCGACGTTCCGGCCTCCCCATCGACGCCCGTAGCAGTGGCGGCTGCGGCAGCCGCTGCCGCTGCCGCTGCAGCAAATTCCGAGGAAGCGTCCTCCATCCTACGTTGGACGGTAAACGATGTGGGCGAGTTTATTCGGGGACTGCCCGGCTGTGCGGATTATGCGGAAGATTTCGTCAACCAGGAGATCGATGGTCAGGCTTTGTTGCTGCTGAAGGAGAACCATCTCGTCAGCACGATGGATATGAAGCTCGGCCCGGCACTGAAAATTGTGGCGCGAGTAAATCTCATGAAGGCGACGGTCGCTCCCGCGGACGGACAACAGCAAGCTGCACCGTAAGCTCGCTGCTGTGCTGTGGGTGGGCAATGTAAATATAGCTGTAGGGTAACTGTTTAAGCATCTGTTTACAAGCTAACGTTAGGCAACAATATTGGATTGTAGAGGAA ] [+] EMBL BX604356 [ CTGCCGCTGCCGCTGCAGCAAATTCCGAGGAAGCGTCCTCCATCCTACGTTGGACGGTAAACGATGTGGGCGAGTTTATTCGGGGACTGCCCGGCTGTGCGGATTATGCGGAAGATTTCGTCAACCAGGAGATCGACGGTCAGGCTTTGTTGCTGCTGAAGGAGAACCATCTCGTCAGCACGATGGATATGAAGCTCGGCCCAGCACTGAAAATTGTGGCGCGAGTAAATCTCATGAAGGCGACGGTCGCTCCCGCGGACGGACAACAGCAAGCTGCACCGTAAGCTCGCTGCTGTGCTGTGGGTGGGCAATGTAAATATAGCTGTAGGGTAACTGTTTAAGCATCTGTTTACAAGCTAACGTTAGGCAACAATATTGGATTGTAGAGGAATGATAAGTGGAAGCGAAAGATTGAATTCTATTTGCTATCCGAGCGCGCTCGAAAAACGGGCGATCGGGAAACAAAACAAACAATTAATTTATTTTATCCATCGTCACTTGAGGCAGTTGTTAAGTTGTAAGAATTATAATTTTCTCCCGATTATTGCTTCTTGTCTACGGTGTAGGTAGAACTGATTAGTCTATCTTACGTCCAGTGTACACAAGGGATTTGTAGAAAAGGAGCAGTTTGTACTGAAATGAGTAGCATTTGATGTGACAATTTTAAGTAGAATGATATCGCCTGAAGT ] [+] EMBL BM623932 [ ccgACGATGGATATGAAGCTCGGCCCGGCACTGAAAATTGTGGCGCGAGTAAATCTCATGAAGGCGACGGTCGCTCCCGCGGACGGACAACAGCAAGCTGCACCGTAAGCTCGCTGCTGTACTGTGGATGGGCAATGTAAATATAGCTGTAGGGTAACTGTTTAAGCATCTGTTTACAAGCTAACGTTAGGCAACAATATTGGATTGTAGAGGAATGATAAGTGGAAGCGAAAGATTGAATTCTATTTGCTATCCGAGCGCGCTCGAGAAACGGGCGATCGGGAAACAAAACAAACAATTAATTTATTTTATCCATCGTCACTTGAGGCAGTTGTTAAGTTGTAAGAATTATAATTTTCTCCCGATTATTGCTTCTTGTCTACGGTGTAGGTAGAACTGATTAGTCTATCTTTCGTCCAGTGTACACAAGGGATTTGTAGAAAAGGAGCAGTTTGTACTGAAATGAGTAGCATTTGATGTGACAATTTAAGGTAGAATGATATCGCTTGAAGTGGTGGCTAAGCGCATGGAGTAAATGCAGATTTCTCTCAGCAAACTGATTTTCAAAGAAACTCGCACCATTGCTCGAGTATGAATGTACATAGGTAGGTCTTAGAAAGCTTAACTAAGCATTTACAGTACCATCTATCGCCTAAGATAGAAACCATCGGCTTAAAGTTCGTTTACAAACAAATATGCAAAAAACAGGAGGCGAATCGATCt ] [+] EMBL BX611388 [ GCGATCGGGAAACAAAACAAACAATTAATTTATTTTATCCATCGTCACTTGAGGCAGTTGTTAAGTTGTAAGAATTATAATTTTCTCCCGATTATTGCTTCTTGTCTACGGTGTAGGTAGAACTGATTAGTCTATCTTACGTCCAGTGTACACAAGGGATTTGTAGAAAAGGAGCAGTTTGTACTGAAATGAGTAGCATTTGATGTGACAATTTAAAGTAGAATGATATCGCTTGAAGTGGTGGCTAAGCGCATGGAGTAAATGCAGATTTCTCTCAGTAAACTGATTTTCAAAGAAACTCGCACCATTGCTCGAGTATGAATGTACATAGGTAGGTCTTAGGAAGCTTAACTAAGCATTTACAGTATCATCTATCGCCTAAGATAGAGACCATCGGCTTAAAGTTCGTTTACAAACAAATATGCAAAAAACAGGAGGCAAATCGATCCAACAAACAAATCTTCTACATTTAAAAAATGACCAATTCTGAAAAAATGCGCTAAAGAAACAAACAATGGAATACACAAAGTTAATGAACGTAATTACTTTCTAAGGAATAAACTTACTTTTTAGCTATAAAAGGCTAGGCGAGTAGTATCACTATAAGAAGGTTGCACGTGGTACAACGTGCAAGTAGTATACAACATGAATCATAAAGGTGT] [+] EMBL BX610631 [ CGATTATTGCTTCTTGTCTACGGTGTAGGTAGAACTGATTAGTCTATCTTACGTCCAGTGTACACAAGGGATTTGTAGAAAAGGAGCAGTTTGTACTGAAATGAGTAGCATTTGATGTGACAATTTAAAGTAGAATGATATCGCTTGAAGTGGTGGCTAAGCGCATGGAGTAAATGCAGATTTCTCTCAGTAAACTGATTTTCAAAGAAACTCGCACCATTGCTCGAGTATGAATGTACATAGGTAGGTCTTAGGAAGCTTAACTAAGCATTTACAGTATCATCTATCGCCTAAGATAGAGACCATCGGCTTAAAGTTCGTTTACAAACAAATATGCAAAAAACAGGAGGCAAATCGATCCAACAAACAAATCTTCTACATTTAAAAAATGACCAATTCTGAAAAAATGCGCTAAAGAAACAAACAATGGAATACACAAAGTTAATGAACGTAATTACTTTCTAAGGAATAAACTTACTTTTTAGCTATAAAAGGCTAGGCGAGTAGTATCACTATAAGAAGGTTGCACGTGGTACAACGTGCAAGTAGTATA ] [+] EMBL BX610632 [ GGATTTGTAGAAAAGGAGCAGTTTGTACTGAAAGGAGTAGCATGTGATGTGACAATTTAAAGTAGAAGGATATCGCTTGAAGTGGTGGCTAAGCGCATGGAGAAAATGCAGATTTCTCGCAGTAAACTGATTTGCAAAGAAACTCGCACCATGGCTCGAGTATGAATGTACATAGGTAGGTCTTAGGAAGCTTAACTAAGCAGTGACAGGAGCATCTATCGCCTAAGAAAG ] consensusID : consensus_7473#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence [CAAGATCCCGCACGAGTGNAGCTCTCGCCATCAATCAAACCAGCGACATGGGCAATTGTGAGGTATGCGGCAAGGCGGAAATGCGCAACAAGATGAAGCGGAAACGATTCTGCAGTGCGGCTTGTGCGCGCTCCGCTAAGCAAGGCTCGCCGGATCAGGTATCGTCGCCGGTGCAGAATGGAACGGCCGGTGCTCCTGGAAGCATGATGCTTCCGCCCAGTAGCAATGGTATGGCCCCACCAACCCCAACCGCACCGATGACAACGGCAATGGACACTTCAGTTGTCGGTTCCATCAACGGTATGATCGGTGTCGCCACCAACCCGGCCGGTGGTGTTGTAGTGCAAGGAGTGGATCCTACGCTTGGCACTCTTCCGCTCGGTCCGTTGGCCGCCTCACCGATGCTGGCACCGGCCGTTGGAGGAGTGCTCCCCACCATGAAGCTAGAAATGGAACAAGAACA] [+] EMBL BX466273 [CAAGATCCCGCACGAGTGNAGCTCTCGCCATCAATCAAACCAGCGACATGGGCAATTGTGAGGTATGCGGCAAGGCGGAAATGCGCAACAAGATGAAGCGGAAACGATTCTGCAGTGCGGCTTGTGCGCGCTCCGCTAAGCAAGGCTCGCCGGATCAGGTATCGTCGCCGGTGCAGAATGGAACGGCCGGTGCTCCTGGAAGCATGATGCTTCCGCCCAGTAGCAATGGTATGGCCCCACCAACCCCAACCGCACCGATGACAACGGCAATGGACACTTCAGTTGTCGGTTCCATCAACGGTATGATCGGTGTCGCCACCAACCCGGCCGGTGGTGTTGTAGTGCAAGGAGTGGATCCTACGCTTGGCACTCTTCCGCTCGGTCCGTTGGCCGCCTCACCGATGCTGGCACCGGCCGTTGGAGGAGTGCTCCCCACCATGAAGCTAGAAATGGAACAAGAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7473#0 CCGCGGACGCGTGGGTTGGAGGAGTGCTCCCCACCA-TGAAGCTAGAAATG-GAACAACA 58 consensus_7473#1 ---CAAGATCCCGCACGAGTGNAGCTCTCGCCATCAATCAAACCAGCGACATGGGCAATT 57 * * * * * ** *** *** ** * ** * ** * * *** consensus_7473#0 ACAGCAGCAGCAACAACAGATGCAGGCCGCCGTACTGCCAACCGGTG-CGCTGGCACAGC 117 consensus_7473#1 GTGAGGTATGCGGCAA-GGCGGAAATGCGCAACAAGATGAAGCGGAAACGATTCTGCAGT 116 ** *** * * * *** * ** *** ** * *** consensus_7473#0 AGCAACTCCTACAGCTTCAACAGCAGCAGCAGCAGCAGCAGCAGGGTCTGCTAC-AGCCC 176 consensus_7473#1 -GCGGCTTGTGCGCGCTCCGCTA-AGCAAGGCTCGCCGGATCAGGTATCGTCGCCGGTGC 174 ** ** * * ** * **** ** * * **** * * * * consensus_7473#0 GCCGCTGCCGGTATGGGACAAGCGCAAGCACCGGCTGCTATGTTGATTGCCGACGTTCCG 236 consensus_7473#1 AGAATGGAACGGCCGGTGCTCCTGGAAGCAT-GATGCTTCCGCCCAGTAGCAATGGTATG 233 * * ** * * ***** * * * * * * * * * * consensus_7473#0 GCCTCCCCATCGACGCCCGTAGCAGTGGCGGCTGCGGCAGCCGCTGCCGCTGCCGCTGCA 296 consensus_7473#1 GCCCCACCAACCCCAACCGCACCGATGACAACGGCAATGGACACTTCAGTTGTCGGTTCC 293 *** * *** * * *** * * ** * * ** * * ** * * ** ** * * consensus_7473#0 GCAAATTCCGAGGAAGCGTCCTCCATCCTACGTTGGACGGTAAACGATGTGGGCGAGTTT 356 consensus_7473#1 ATCAA--CGGTATGATCGGTGTCGCCACCAACCCGGCCGGTGG-TGTTGTAG-------T 343 ** * * * ** ** * * ** **** * *** * * consensus_7473#0 ATTCGGGGACTGCCCGGCTGTGCGGATTATGCGGAAGATTTCGTCAACCAGGAGATCGAT 416 consensus_7473#1 GCAAGGAGTGGATCCTACGCTTGGCACTCTTCCGCTCGGTCCGTTGGCCGCCTCACCGAT 403 ** * ** * * * * * * * * * *** ** * **** consensus_7473#0 GGTCAGGCTTTGTTGCTGCTGAAGGAGAACCATCTCGTCAGCACGATGGATATGAAGCTC 476 consensus_7473#1 G--CTGGCACCG--GCCGTTGGAGGAGTGCT-CCCCACCATGAAGCTAGAAATGGAACAA 458 * * *** * ** * ** ***** * * * ** * * * ** *** * * consensus_7473#0 GGCCCGGCACTGAAAATTGTGGCGCGAGTAAATCTCATGAAGGCGACGGTCGCTCCCGCG 536 consensus_7473#1 GAACA------------------------------------------------------- 463 * * consensus_7473#0 GACGGACAACAGCAAGCTGCACCGTAAGCTCGCTGCTGTGCTGTGGGTGGGCAATGTAAA 596 consensus_7473#1 ------------------------------------------------------------ consensus_7473#0 TATAGCTGTAGGGTAACTGTTTAAGCATCTGTTTACAAGCTAACGTTAGGCAACAATATT 656 consensus_7473#1 ------------------------------------------------------------ consensus_7473#0 GGATTGTAGAGGAATGATAAGTGGAAGCGAAAGATTGAATTCTATTTGCTATCCGAGCGC 716 consensus_7473#1 ------------------------------------------------------------ consensus_7473#0 GCTCGAAAAACGGGCGATCGGGAAACAAAACAAACAATTAATTTATTTTATCCATCGTCA 776 consensus_7473#1 ------------------------------------------------------------ consensus_7473#0 CTTGAGGCAGTTGTTAAGTTGTAAGAATTATAATTTTCTCCCGATTATTGCTTCTTGTCT 836 consensus_7473#1 ------------------------------------------------------------ consensus_7473#0 ACGGTGTAGGTAGAACTGATTAGTCTATCTTACGTCCAGTGTACACAAGGGATTTGTAGA 896 consensus_7473#1 ------------------------------------------------------------ consensus_7473#0 AAAGGAGCAGTTTGTACTGAAATGAGTAGCATTTGATGTGACAATTTAAAGTAGAATGAT 956 consensus_7473#1 ------------------------------------------------------------ consensus_7473#0 ATCGCTTGAAGTGGTGGCTAAGCGCATGGAGTAAATGCAGATTTCTCTCAGTAAACTGAT 1016 consensus_7473#1 ------------------------------------------------------------ consensus_7473#0 TTTCAAAGAAACTCGCACCATTGCTCGAGTATGAATGTACATAGGTAGGTCTTAGGAAGC 1076 consensus_7473#1 ------------------------------------------------------------ consensus_7473#0 TTAACTAAGCATTTACAGTATCATCTATCGCCTAAGATAGAGACCATCGGCTTAAAGTTC 1136 consensus_7473#1 ------------------------------------------------------------ consensus_7473#0 GTTTACAAACAAATATGCAAAAAACAGGAGGCAAATCGATCCAACAAACAAATCTTCTAC 1196 consensus_7473#1 ------------------------------------------------------------ consensus_7473#0 ATTTAAAAAATGACCAATTCTGAAAAAATGCGCTAAAGAAACAAACAATGGAATACACAA 1256 consensus_7473#1 ------------------------------------------------------------ consensus_7473#0 AGTTAATGAACGTAATTACTTTCTAAGGAATAAACTTACTTTTTAGCTATAAAAGGCTAG 1316 consensus_7473#1 ------------------------------------------------------------ consensus_7473#0 GCGAGTAGTATCACTATAAGAAGGTTGCACGTGGTACAACGTGCAAGTAGTATACAACAT 1376 consensus_7473#1 ------------------------------------------------------------ consensus_7473#0 GAATCATAAAGGTGT 1391 consensus_7473#1 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||