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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7473#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1391 fasta sequence
[CCGCGGACGCGTGGGTTGGAGGAGTGCTCCCCACCATGAAGCTAGAAATGGAACAACAACAGCAGCAGCAACAACAGATGCAGGCCGCCGTACTGCCAACCGGTGCGCTGGCACAGCAGCAACTCCTACAGCTTCAACAGCAGCAGCAGCAGCAGCAGCAGGGTCTGCTACAGCCCGCCGCTGCCGGTATGGGACAAGCGCAAGCACCGGCTGCTATGTTGATTGCCGACGTTCCGGCCTCCCCATCGACGCCCGTAGCAGTGGCGGCTGCGGCAGCCGCTGCCGCTGCCGCTGCAGCAAATTCCGAGGAAGCGTCCTCCATCCTACGTTGGACGGTAAACGATGTGGGCGAGTTTATTCGGGGACTGCCCGGCTGTGCGGATTATGCGGAAGATTTCGTCAACCAGGAGATCGATGGTCAGGCTTTGTTGCTGCTGAAGGAGAACCATCTCGTCAGCACGATGGATATGAAGCTCGGCCCGGCACTGAAAATTGTGGCGCGAGTAAATCTCATGAAGGCGACGGTCGCTCCCGCGGACGGACAACAGCAAGCTGCACCGTAAGCTCGCTGCTGTGCTGTGGGTGGGCAATGTAAATATAGCTGTAGGGTAACTGTTTAAGCATCTGTTTACAAGCTAACGTTAGGCAACAATATTGGATTGTAGAGGAATGATAAGTGGAAGCGAAAGATTGAATTCTATTTGCTATCCGAGCGCGCTCGAAAAACGGGCGATCGGGAAACAAAACAAACAATTAATTTATTTTATCCATCGTCACTTGAGGCAGTTGTTAAGTTGTAAGAATTATAATTTTCTCCCGATTATTGCTTCTTGTCTACGGTGTAGGTAGAACTGATTAGTCTATCTTACGTCCAGTGTACACAAGGGATTTGTAGAAAAGGAGCAGTTTGTACTGAAATGAGTAGCATTTGATGTGACAATTTAAAGTAGAATGATATCGCTTGAAGTGGTGGCTAAGCGCATGGAGTAAATGCAGATTTCTCTCAGTAAACTGATTTTCAAAGAAACTCGCACCATTGCTCGAGTATGAATGTACATAGGTAGGTCTTAGGAAGCTTAACTAAGCATTTACAGTATCATCTATCGCCTAAGATAGAGACCATCGGCTTAAAGTTCGTTTACAAACAAATATGCAAAAAACAGGAGGCAAATCGATCCAACAAACAAATCTTCTACATTTAAAAAATGACCAATTCTGAAAAAATGCGCTAAAGAAACAAACAATGGAATACACAAAGTTAATGAACGTAATTACTTTCTAAGGAATAAACTTACTTTTTAGCTATAAAAGGCTAGGCGAGTAGTATCACTATAAGAAGGTTGCACGTGGTACAACGTGCAAGTAGTATACAACATGAATCATAAAGGTGT]
[+] EMBL BM603195 [CCGCGGACGCGTGGGTTGGAGGAGTGCTCCCCACCATGAAGCTAGAAATGGAACAACAACAGCAGCAGCAACAACAGATGCAGGCCGCCGTACTGCCAACCGGTGCGCTGGCACAGCAGCAACTCCTACAGCTTCAACAGCAGCAGCAGCAGCAGCAGCAGGGTCTGCTACAGCCCGCCGCTGCCGGTATGGGACAAGCGCAAGCACCGGCTGCTATGTTGATTGCCGACGTTCCGGCCTCCCCATCGACGCCCGTAGCAGTGGCGGCTGCGGCAGCCGCTGCCGCTGCCGCTGCAGCAAATTCCGAGGAAGCGTCCTCCATCCTACGTTGGACGGTAAACGATGTGGGCGAGTTTATTCGGGGACTGCCCGGCTGTGCGGATTATGCGGAAGATTTCGTCAACCAGGAGATCGATGGTCAGGCTTTGTTGCTGCTGAAGGAGAACCATCTCGTCAGCACGATGGATATGAAGCTCGGCCCGGCACTGAAAATTGTGGCGCGAGTAAATCTCATGAAGGCGACGGTCGCTCCCGCGGACGGACAACAGCAAGCTGCACCGTAAGCTCGCTGCTGTGCTGTGGGTGGGCAATGTAAATATAGCTGTAGGGTAACTGTTTAAGCATCTGTTTACAAGCTAACGTTAGGCAACAATATTGGATTGTAGAGGAA ]
[+] EMBL BX604356 [ CTGCCGCTGCCGCTGCAGCAAATTCCGAGGAAGCGTCCTCCATCCTACGTTGGACGGTAAACGATGTGGGCGAGTTTATTCGGGGACTGCCCGGCTGTGCGGATTATGCGGAAGATTTCGTCAACCAGGAGATCGACGGTCAGGCTTTGTTGCTGCTGAAGGAGAACCATCTCGTCAGCACGATGGATATGAAGCTCGGCCCAGCACTGAAAATTGTGGCGCGAGTAAATCTCATGAAGGCGACGGTCGCTCCCGCGGACGGACAACAGCAAGCTGCACCGTAAGCTCGCTGCTGTGCTGTGGGTGGGCAATGTAAATATAGCTGTAGGGTAACTGTTTAAGCATCTGTTTACAAGCTAACGTTAGGCAACAATATTGGATTGTAGAGGAATGATAAGTGGAAGCGAAAGATTGAATTCTATTTGCTATCCGAGCGCGCTCGAAAAACGGGCGATCGGGAAACAAAACAAACAATTAATTTATTTTATCCATCGTCACTTGAGGCAGTTGTTAAGTTGTAAGAATTATAATTTTCTCCCGATTATTGCTTCTTGTCTACGGTGTAGGTAGAACTGATTAGTCTATCTTACGTCCAGTGTACACAAGGGATTTGTAGAAAAGGAGCAGTTTGTACTGAAATGAGTAGCATTTGATGTGACAATTTTAAGTAGAATGATATCGCCTGAAGT ]
[+] EMBL BM623932 [ ccgACGATGGATATGAAGCTCGGCCCGGCACTGAAAATTGTGGCGCGAGTAAATCTCATGAAGGCGACGGTCGCTCCCGCGGACGGACAACAGCAAGCTGCACCGTAAGCTCGCTGCTGTACTGTGGATGGGCAATGTAAATATAGCTGTAGGGTAACTGTTTAAGCATCTGTTTACAAGCTAACGTTAGGCAACAATATTGGATTGTAGAGGAATGATAAGTGGAAGCGAAAGATTGAATTCTATTTGCTATCCGAGCGCGCTCGAGAAACGGGCGATCGGGAAACAAAACAAACAATTAATTTATTTTATCCATCGTCACTTGAGGCAGTTGTTAAGTTGTAAGAATTATAATTTTCTCCCGATTATTGCTTCTTGTCTACGGTGTAGGTAGAACTGATTAGTCTATCTTTCGTCCAGTGTACACAAGGGATTTGTAGAAAAGGAGCAGTTTGTACTGAAATGAGTAGCATTTGATGTGACAATTTAAGGTAGAATGATATCGCTTGAAGTGGTGGCTAAGCGCATGGAGTAAATGCAGATTTCTCTCAGCAAACTGATTTTCAAAGAAACTCGCACCATTGCTCGAGTATGAATGTACATAGGTAGGTCTTAGAAAGCTTAACTAAGCATTTACAGTACCATCTATCGCCTAAGATAGAAACCATCGGCTTAAAGTTCGTTTACAAACAAATATGCAAAAAACAGGAGGCGAATCGATCt ]
[+] EMBL BX611388 [ GCGATCGGGAAACAAAACAAACAATTAATTTATTTTATCCATCGTCACTTGAGGCAGTTGTTAAGTTGTAAGAATTATAATTTTCTCCCGATTATTGCTTCTTGTCTACGGTGTAGGTAGAACTGATTAGTCTATCTTACGTCCAGTGTACACAAGGGATTTGTAGAAAAGGAGCAGTTTGTACTGAAATGAGTAGCATTTGATGTGACAATTTAAAGTAGAATGATATCGCTTGAAGTGGTGGCTAAGCGCATGGAGTAAATGCAGATTTCTCTCAGTAAACTGATTTTCAAAGAAACTCGCACCATTGCTCGAGTATGAATGTACATAGGTAGGTCTTAGGAAGCTTAACTAAGCATTTACAGTATCATCTATCGCCTAAGATAGAGACCATCGGCTTAAAGTTCGTTTACAAACAAATATGCAAAAAACAGGAGGCAAATCGATCCAACAAACAAATCTTCTACATTTAAAAAATGACCAATTCTGAAAAAATGCGCTAAAGAAACAAACAATGGAATACACAAAGTTAATGAACGTAATTACTTTCTAAGGAATAAACTTACTTTTTAGCTATAAAAGGCTAGGCGAGTAGTATCACTATAAGAAGGTTGCACGTGGTACAACGTGCAAGTAGTATACAACATGAATCATAAAGGTGT]
[+] EMBL BX610631 [ CGATTATTGCTTCTTGTCTACGGTGTAGGTAGAACTGATTAGTCTATCTTACGTCCAGTGTACACAAGGGATTTGTAGAAAAGGAGCAGTTTGTACTGAAATGAGTAGCATTTGATGTGACAATTTAAAGTAGAATGATATCGCTTGAAGTGGTGGCTAAGCGCATGGAGTAAATGCAGATTTCTCTCAGTAAACTGATTTTCAAAGAAACTCGCACCATTGCTCGAGTATGAATGTACATAGGTAGGTCTTAGGAAGCTTAACTAAGCATTTACAGTATCATCTATCGCCTAAGATAGAGACCATCGGCTTAAAGTTCGTTTACAAACAAATATGCAAAAAACAGGAGGCAAATCGATCCAACAAACAAATCTTCTACATTTAAAAAATGACCAATTCTGAAAAAATGCGCTAAAGAAACAAACAATGGAATACACAAAGTTAATGAACGTAATTACTTTCTAAGGAATAAACTTACTTTTTAGCTATAAAAGGCTAGGCGAGTAGTATCACTATAAGAAGGTTGCACGTGGTACAACGTGCAAGTAGTATA ]
[+] EMBL BX610632 [ GGATTTGTAGAAAAGGAGCAGTTTGTACTGAAAGGAGTAGCATGTGATGTGACAATTTAAAGTAGAAGGATATCGCTTGAAGTGGTGGCTAAGCGCATGGAGAAAATGCAGATTTCTCGCAGTAAACTGATTTGCAAAGAAACTCGCACCATGGCTCGAGTATGAATGTACATAGGTAGGTCTTAGGAAGCTTAACTAAGCAGTGACAGGAGCATCTATCGCCTAAGAAAG ]
consensusID : consensus_7473#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence
[CAAGATCCCGCACGAGTGNAGCTCTCGCCATCAATCAAACCAGCGACATGGGCAATTGTGAGGTATGCGGCAAGGCGGAAATGCGCAACAAGATGAAGCGGAAACGATTCTGCAGTGCGGCTTGTGCGCGCTCCGCTAAGCAAGGCTCGCCGGATCAGGTATCGTCGCCGGTGCAGAATGGAACGGCCGGTGCTCCTGGAAGCATGATGCTTCCGCCCAGTAGCAATGGTATGGCCCCACCAACCCCAACCGCACCGATGACAACGGCAATGGACACTTCAGTTGTCGGTTCCATCAACGGTATGATCGGTGTCGCCACCAACCCGGCCGGTGGTGTTGTAGTGCAAGGAGTGGATCCTACGCTTGGCACTCTTCCGCTCGGTCCGTTGGCCGCCTCACCGATGCTGGCACCGGCCGTTGGAGGAGTGCTCCCCACCATGAAGCTAGAAATGGAACAAGAACA]
[+] EMBL BX466273 [CAAGATCCCGCACGAGTGNAGCTCTCGCCATCAATCAAACCAGCGACATGGGCAATTGTGAGGTATGCGGCAAGGCGGAAATGCGCAACAAGATGAAGCGGAAACGATTCTGCAGTGCGGCTTGTGCGCGCTCCGCTAAGCAAGGCTCGCCGGATCAGGTATCGTCGCCGGTGCAGAATGGAACGGCCGGTGCTCCTGGAAGCATGATGCTTCCGCCCAGTAGCAATGGTATGGCCCCACCAACCCCAACCGCACCGATGACAACGGCAATGGACACTTCAGTTGTCGGTTCCATCAACGGTATGATCGGTGTCGCCACCAACCCGGCCGGTGGTGTTGTAGTGCAAGGAGTGGATCCTACGCTTGGCACTCTTCCGCTCGGTCCGTTGGCCGCCTCACCGATGCTGGCACCGGCCGTTGGAGGAGTGCTCCCCACCATGAAGCTAGAAATGGAACAAGAACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7473#0 CCGCGGACGCGTGGGTTGGAGGAGTGCTCCCCACCA-TGAAGCTAGAAATG-GAACAACA 58
consensus_7473#1 ---CAAGATCCCGCACGAGTGNAGCTCTCGCCATCAATCAAACCAGCGACATGGGCAATT 57
* * * * * ** *** *** ** * ** * ** * * ***
consensus_7473#0 ACAGCAGCAGCAACAACAGATGCAGGCCGCCGTACTGCCAACCGGTG-CGCTGGCACAGC 117
consensus_7473#1 GTGAGGTATGCGGCAA-GGCGGAAATGCGCAACAAGATGAAGCGGAAACGATTCTGCAGT 116
** *** * * * *** * ** *** ** * ***
consensus_7473#0 AGCAACTCCTACAGCTTCAACAGCAGCAGCAGCAGCAGCAGCAGGGTCTGCTAC-AGCCC 176
consensus_7473#1 -GCGGCTTGTGCGCGCTCCGCTA-AGCAAGGCTCGCCGGATCAGGTATCGTCGCCGGTGC 174
** ** * * ** * **** ** * * **** * * * *
consensus_7473#0 GCCGCTGCCGGTATGGGACAAGCGCAAGCACCGGCTGCTATGTTGATTGCCGACGTTCCG 236
consensus_7473#1 AGAATGGAACGGCCGGTGCTCCTGGAAGCAT-GATGCTTCCGCCCAGTAGCAATGGTATG 233
* * ** * * ***** * * * * * * * * * *
consensus_7473#0 GCCTCCCCATCGACGCCCGTAGCAGTGGCGGCTGCGGCAGCCGCTGCCGCTGCCGCTGCA 296
consensus_7473#1 GCCCCACCAACCCCAACCGCACCGATGACAACGGCAATGGACACTTCAGTTGTCGGTTCC 293
*** * *** * * *** * * ** * * ** * * ** * * ** ** * *
consensus_7473#0 GCAAATTCCGAGGAAGCGTCCTCCATCCTACGTTGGACGGTAAACGATGTGGGCGAGTTT 356
consensus_7473#1 ATCAA--CGGTATGATCGGTGTCGCCACCAACCCGGCCGGTGG-TGTTGTAG-------T 343
** * * * ** ** * * ** **** * *** * *
consensus_7473#0 ATTCGGGGACTGCCCGGCTGTGCGGATTATGCGGAAGATTTCGTCAACCAGGAGATCGAT 416
consensus_7473#1 GCAAGGAGTGGATCCTACGCTTGGCACTCTTCCGCTCGGTCCGTTGGCCGCCTCACCGAT 403
** * ** * * * * * * * * * *** ** * ****
consensus_7473#0 GGTCAGGCTTTGTTGCTGCTGAAGGAGAACCATCTCGTCAGCACGATGGATATGAAGCTC 476
consensus_7473#1 G--CTGGCACCG--GCCGTTGGAGGAGTGCT-CCCCACCATGAAGCTAGAAATGGAACAA 458
* * *** * ** * ** ***** * * * ** * * * ** *** * *
consensus_7473#0 GGCCCGGCACTGAAAATTGTGGCGCGAGTAAATCTCATGAAGGCGACGGTCGCTCCCGCG 536
consensus_7473#1 GAACA------------------------------------------------------- 463
* *
consensus_7473#0 GACGGACAACAGCAAGCTGCACCGTAAGCTCGCTGCTGTGCTGTGGGTGGGCAATGTAAA 596
consensus_7473#1 ------------------------------------------------------------
consensus_7473#0 TATAGCTGTAGGGTAACTGTTTAAGCATCTGTTTACAAGCTAACGTTAGGCAACAATATT 656
consensus_7473#1 ------------------------------------------------------------
consensus_7473#0 GGATTGTAGAGGAATGATAAGTGGAAGCGAAAGATTGAATTCTATTTGCTATCCGAGCGC 716
consensus_7473#1 ------------------------------------------------------------
consensus_7473#0 GCTCGAAAAACGGGCGATCGGGAAACAAAACAAACAATTAATTTATTTTATCCATCGTCA 776
consensus_7473#1 ------------------------------------------------------------
consensus_7473#0 CTTGAGGCAGTTGTTAAGTTGTAAGAATTATAATTTTCTCCCGATTATTGCTTCTTGTCT 836
consensus_7473#1 ------------------------------------------------------------
consensus_7473#0 ACGGTGTAGGTAGAACTGATTAGTCTATCTTACGTCCAGTGTACACAAGGGATTTGTAGA 896
consensus_7473#1 ------------------------------------------------------------
consensus_7473#0 AAAGGAGCAGTTTGTACTGAAATGAGTAGCATTTGATGTGACAATTTAAAGTAGAATGAT 956
consensus_7473#1 ------------------------------------------------------------
consensus_7473#0 ATCGCTTGAAGTGGTGGCTAAGCGCATGGAGTAAATGCAGATTTCTCTCAGTAAACTGAT 1016
consensus_7473#1 ------------------------------------------------------------
consensus_7473#0 TTTCAAAGAAACTCGCACCATTGCTCGAGTATGAATGTACATAGGTAGGTCTTAGGAAGC 1076
consensus_7473#1 ------------------------------------------------------------
consensus_7473#0 TTAACTAAGCATTTACAGTATCATCTATCGCCTAAGATAGAGACCATCGGCTTAAAGTTC 1136
consensus_7473#1 ------------------------------------------------------------
consensus_7473#0 GTTTACAAACAAATATGCAAAAAACAGGAGGCAAATCGATCCAACAAACAAATCTTCTAC 1196
consensus_7473#1 ------------------------------------------------------------
consensus_7473#0 ATTTAAAAAATGACCAATTCTGAAAAAATGCGCTAAAGAAACAAACAATGGAATACACAA 1256
consensus_7473#1 ------------------------------------------------------------
consensus_7473#0 AGTTAATGAACGTAATTACTTTCTAAGGAATAAACTTACTTTTTAGCTATAAAAGGCTAG 1316
consensus_7473#1 ------------------------------------------------------------
consensus_7473#0 GCGAGTAGTATCACTATAAGAAGGTTGCACGTGGTACAACGTGCAAGTAGTATACAACAT 1376
consensus_7473#1 ------------------------------------------------------------
consensus_7473#0 GAATCATAAAGGTGT 1391
consensus_7473#1 ---------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||