These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7476#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1299 fasta sequence [CCGGCAGCTGCGGCAGCGTCTTTCGTGTGTTTATTTTTGTGGTAAAAATATCACATTCTGCACCGTTTTCCGAGTGCAACGTGGTAAGGAAATTCGTTCCTG-AGCTTCGAATGAACCTTCGCACGTAAAAAGTGTTTATAACTAAATAGCTATACCAATCGCCGTACAAGTTTATCGCTTGCCTTTTGACCACAAAATGCCTTTCGCAATCGTGGAGGCACATGAAGCAGGGGATGCTAACAAACAGCTCTACGTTGTGCCGGAAGGATGGCTTTTGGATACGGAACAAACGGAAACGATTCTACTGTGGCCAAGGTGCGATGGTCTACAAATGTACAAACTGTTAACTGACGGTGAAAGTGTGGCCAACACCAAGTGGATAAAGATGAATTGCACAGTGAAAATGATTAATATACCAAACCTATCCGTTGCACATGGGCATATTTCCAAGCTGAAAGGAGAATGCATTGAACCATCGGAAGACACTGCTTCGCAAGTAGTTCAAAAATGTCCAACGCCTAGCCCTTTGGAGGAAGAATGTTCTAACGTGCCTTGCGAAGAAGATATCAGTGAGCAAAAAGCTGAATCATCCTTTTCCAAAATTCACACAAAAACAATGGAAATTGCACCCCGCATCGGTGCGAACAATATCCGAGAAAGATTTCTTCCACTTTCTGCTAAAAGTTAATCAAAAAATCACCCTGCTGGAGGCGTTGGTTCGCAAAATTACCGATAAAGTGGTTTACCTCGAAGCACAGGCGCAAATGCTCCAAAGCCGACTTAATTCTCGAACTGCCCCAAAGCAGCCCATGATAAGCGATGTAGACTTTAAGCAAATCGATTGCTTGCAGAGCCTAGAAAGCTTCAACGAAAAACTACTCGACAAAGAGTATCAGGACAAAATGTACCAATGGCTAAACGCGCAGATTACCGAAGTGAAGAGCGAAAACCGCATGATAGAGGCAATCGATATACTGTTTACCAAGCGGTTCATGACAAAGTGCAGCTGGACGGGGGTAGGGCGGGGCAGCGAGAAGATCGCCATGATGCGTATGGTCAACATTAGCAAGCTGTTTCGGCGCGTCGGCACGACCGCGAGCGTAATCGTGAACCAGCGGATGGTGATGATGTTTTTCATGAAAAAGCTCCGGAACGCCGTCCGCCGGAGTGAGATGAAGCATTTGCGCCGCAGCACTTCG-CATAATGTTCCCTCGCACAAGGCAAAGACCGAAAGTCAATAAAATGATTATCTCCTAGCGTCGCTGCAGGTTGCCTTACTGGTGAAAAAGAGAAAAAAAG] [+] EMBL BM616187 [CCGGCAGCTGCGGCAGCGTCTTTCGTGTGTTTATTTTTGTGGTAAAAATATCACATTCTGCACCGTTTTCCGAGTGCAACGTGGTATGGAAATTCGTTCCTG AGCTTCGAATGAACCTTCGCACGTAAAAAGTGTTTATAACTAAATAGCTATACCAATCGCCGTACAAGTTTATCGCTTGCCTTTTGACCACAAAATGCCTTTCGCAATCGTGGAGGCACATGAAGCAGGGGATGCTAACAAACAGCTCTACGTTGTGCCGGAAGGGTGGCTTTTGGATACGGAACAAACGGAAACGATTCTACTGTGGCCAAGGTGCAATGGTCTACAAATGTACAAACTGTTAACTGACGGTGAAAGTGTGGCCAACACCAAGTGGATAAAGATGAATTGCACAGTGAAAATGATTAATATACCAAACCTATCCGTTGCACATGGGCATATTTCCAAGCTGAAAGGAGAATGCATTGAACCATCGGAAGACACTGCTTCGCAAGTAGTTCAAAAATGTCCAACGCCTAGCCCTTTGGAGGAAGAATGTTCTAACGTGCCTTGCGAAGAAGATATCAGTGAGCAAAAAGCTGAATCATCCTTTTCCAAAATTCACACAAAAACAATGGAAATTGCACCCCGCATCGGTGCGAACAATATCCGAGAAAGATTTCTTCC ] [+] EMBL BM588483 [ ccgcccacGCGTC CG GTGTTTATTTTTGTGGTAAAAATATTGCATTCTGTACCGTTTTCCGAGTGTAACGTAGTTAGGAAATTCGTTCCTA AGCTTCAAATGAACCTCCGCACGTTAAAAGTGTTTATA GAATAGCTATACCAATCGGTGTATAAGTTTATCGCCTGTCTTTTGACCACAAAATGCCTTTCGCAATCGTGGAGGCACATGATGCGGGAGATGCTAACAAACAGCTCTACGTTGTGCCGGAAGGATGGCTTTTGGATACGGAACAGACGGAAACGATTCTACTGTGGCCAAGGTGCGATGGTCTAGAAATGTACAAACTGTTAACCGACAGTGAAAGTGTGGCCAACACCAAGTGGATAAAGATGAATTGCACAGTGAAAATGATTAATATACCAAACCTATCCGTTGCACATGGGCATGTTTCCAAGCTGAAAGGAGAATGCATTGAACCTTCGGAAGACACTGCTTCGCAAGTAGTTCAAAAATGTCCAACGCCTATCCCCTTGGAGGAAGAATGCTCTAACGTGCCTTGCGAAGAAGATATCAGTGAGCAAAAAGCTGAATCATCCTTTTCCAAAACTCACACAAAAACAATGGAAATTGCA CCCGCATCGGTGCGAACAATATCCGAGAAAGATTTCTTCAACTTTCTGCTAAAAGTTAATCAAAAAATCATCCTG ] [+] EMBL BX626362 [ acGGAAATTCG AATGAACCTTCGAATGAACCTTCGCNCGTANAAAGTGTTTATAACTAAATAGCTATACCAATCGCCGTACAAGTTTATCGCTTGCCTTTTGACCACAAAATGCCTTTCGCAATCGTGGAGGCACATGAAGCAGGGGATGCTAACAAACAGCTCTACGTTGTGCCGGAAGGATGGCTTTTGGATACGGAACAAACGGAAACGATTCTACTGTGGCCAAGGCGCGANGGTCTACAAATG ] [+] EMBL BX609132 [ ATCCGAGAAAGATTTCTTCCACTTTCTGCTAAAAGTTAATCAAAAAATCACCCTGCTGGAGGCGTTGGTTCGCAAAATTACCGATAAAGTGGTTTACCTCGAAGCACAGGCGCAAATGCTCCAAAGCCGACTTAATTCTCGAACTGCCCCAAAGCAGCCCATGATAAGCGATGTAGACTTTAAGCAAATCGATTGCTTGCAGAGCCTAGAAAGCTTCAACGAAAAACTACTCGACAAAGAGTATCAGGACAAAATGTACCAATGGCTAAACGCGCAGATTACCGAAGTGAAGAGCGAAAACCGCATGATAGAGGCAATCGATATACTGTTTACCAAGCGGTTCATGACAAAGTGCAGCTGGACGGGGGTAGGGCGGGGCAGCGAGAAGATCGCCATGATGCGTATGGTCAACATTAGCAAGCTGTTTCGGCGCGTCGGCACGACCGCGAGCGTAATCGTGAACCAGCGGATGGTGATGATGTTTTTCATGAAAAAGCTCCGGAACGCCGTCCGCCGGAGTGAGATGAAGCATTTGCGCCGCAGCACTTCG CATAATGTTCCCTCGCACAAGGCAAAGACCGAAAGTCAATAAAATGATTATCTCCTAGCGTCGCTGCAGGTTGCCTTA ] [+] EMBL BX610410 [ ATCCGAGAAAGATTTCTTCCACTTTCTGCTAAAAGTTAATCAAAAAATCACCCTGCTGGAGGCGTTGGTTCGCAAAATTACCGATAAAGTGGTTTACCTCGAAGCACAGGCGCAAATGCTCCAAAGCCGACTTAATTCTCGAACTGCCCCAAAGCAGCCCATGATAAGCGATGTAGACTTTAAGCAAATCGATTGCTTGCAGAGCCTAGAAAGCTTCAACGAAAAACTACTCGACAAAGAGTATCAGGACAAAATGTACCAATGGCTAAACGCGCAGATTACCGAAGTGAAGAGCGAAAACCGCATGATAGAGGCAATCGATATACTGTTTACCAAGCGGTTCATGACAAAGTGCAGCTGGACGGGGGTAGGGCGGGGCAGCGAGAAGATCGCCATGATGCGTATGGTCAACATTAGCAAGCTGTTTCGGCGCGTCGGCACGACCGCGAGCGTAATCGTGAACCA ] [-] EMBL AGA280583 [ aGCAGCACTTCGCCCTCATGTTCCCTCGCACAAGGCAAAGACCGAAATTCAATAAAATGATTATCTCCTAGCGTCGTTGCAGGTTGCCTTGCTGGTGAAAAAGAGAAAAAAAG] consensusID : consensus_7476#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGAGAGTATCAGGACAAAATGTACCAATGGCTAAACGCGCAGATTACCGAAGTGAAGAGCGAAAACCGCATGATAGAGGCAATCGATATACTGTTTACCAAGCGGTTCATGACAGAAGATCGCCATGATGCGTATGGTCAACATTAGCAAGCTGTTTCGGCGCGTCGGCACGACCGCGAGCGTAATCGTGAACCAGCGGATGGTGATGATGTTTTTCATGAAAAAGCTCCGGAACGCCGTCCGCCGGAGTGAGATGAAGCATTTGCGCCGCAGCACTTCGCATAATGTTCCCTCGCACAAGGCAAAGACCGAAAGTCAATAAAATGATTATCTCCTAGCGTCGCTGCAGGTTGCCTTACTGTTAGTTT] [+] EMBL BM607209 [CCGCGGACGCGTGGGCGGACGCGTGGGAGAGTATCAGGACAAAATGTACCAATGGCTAAACGCGCAGATTACCGAAGTGAAGAGCGAAAACCGCATGATAGAGGCAATCGATATACTGTTTACCAAGCGGTTCATGACAGAAGATCGCCATGATGCGTATGGTCAACATTAGCAAGCTGTTTCGGCGCGTCGGCACGACCGCGAGCGTAATCGTGAACCAGCGGATGGTGATGATGTTTTTCATGAAAAAGCTCCGGAACGCCGTCCGCCGGAGTGAGATGAAGCATTTGCGCCGCAGCACTTCGCATAATGTTCCCTCGCACAAGGCAAAGACCGAAAGTCAATAAAATGATTATCTCCTAGCGTCGCTGCAGGTTGCCTTACTGTTAGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7476#0 CCGGCAGCTGCGGCAGCGTCTTTCGTGTGTTTATTTTTGTGGTAAAAATATCACATTCTG 60 consensus_7476#1 ------------------------------------------------------------ consensus_7476#0 CACCGTTTTCCGAGTGCAACGTGGTAAGGAAATTCGTTCCTGAGCTTCGAATGAACCTTC 120 consensus_7476#1 ------------------------------------------------------------ consensus_7476#0 GCACGTAAAAAGTGTTTATAACTAAATAGCTATACCAATCGCCGTACAAGTTTATCGCTT 180 consensus_7476#1 ------------------------------------------------------------ consensus_7476#0 GCCTTTTGACCACAAAATGCCTTTCGCAATCGTGGAGGCACATGAAGCAGGGGATGCTAA 240 consensus_7476#1 ------------------------------------------------------------ consensus_7476#0 CAAACAGCTCTACGTTGTGCCGGAAGGATGGCTTTTGGATACGGAACAAACGGAAACGAT 300 consensus_7476#1 ------------------------------------------------------------ consensus_7476#0 TCTACTGTGGCCAAGGTGCGATGGTCTACAAATGTACAAACTGTTAACTGACGGTGAAAG 360 consensus_7476#1 ------------------------------------------------------------ consensus_7476#0 TGTGGCCAACACCAAGTGGATAAAGATGAATTGCACAGTGAAAATGATTAATATACCAAA 420 consensus_7476#1 ------------------------------------------------------------ consensus_7476#0 CCTATCCGTTGCACATGGGCATATTTCCAAGCTGAAAGGAGAATGCATTGAACCATCGGA 480 consensus_7476#1 ------------------------------------------------------------ consensus_7476#0 AGACACTGCTTCGCAAGTAGTTCAAAAATGTCCAACGCCTAGCCCTTTGGAGGAAGAATG 540 consensus_7476#1 ------------------------------------------------------------ consensus_7476#0 TTCTAACGTGCCTTGCGAAGAAGATATCAGTGAGCAAAAAGCTGAATCATCCTTTTCCAA 600 consensus_7476#1 ------------------------------------------------------------ consensus_7476#0 AATTCACACAAAAACAATGGAAATTGCACCCCGCATCGGTGCGAACAATATCCGAGAAAG 660 consensus_7476#1 ------------------------------------------------------------ consensus_7476#0 ATTTCTTCCACTTTCTGCTAAAAGTTAATCAAAAAATCACCCTGCTGGAGGCGTTGGTTC 720 consensus_7476#1 ------------------------------------------------------------ consensus_7476#0 GCAAAATTACCGATAAAGTGGTTTACCTCGAAGCACAGGCGCAAATGCTCCAAAGCCGAC 780 consensus_7476#1 ------------------------------------------------------------ consensus_7476#0 TTAATTCTCGAACTGCCCCAAAGCAGCCCATGATAAGCGATGTAGACTTTAAGCAAATCG 840 consensus_7476#1 ------------------------------------------------------------ consensus_7476#0 ATTGCTTGCAGAGCCTAGAAAGCTTCAACGAAAAACTACTCGACAAAGAGTATCAGGACA 900 consensus_7476#1 -------------CCGCGGACGCGTGGGCGGA------CGCGTGGGAGAGTATCAGGACA 41 ** * * ** * ** * * ** ************** consensus_7476#0 AAATGTACCAATGGCTAAACGCGCAGATTACCGAAGTGAAGAGCGAAAACCGCATGATAG 960 consensus_7476#1 AAATGTACCAATGGCTAAACGCGCAGATTACCGAAGTGAAGAGCGAAAACCGCATGATAG 101 ************************************************************ consensus_7476#0 AGGCAATCGATATACTGTTTACCAAGCGGTTCATGACAAAGTGCAGCTGGACGGGGGTAG 1020 consensus_7476#1 AGGCAATCGATATACTGTTTACCAAGCGGTTCATGACA---------------------- 139 ************************************** consensus_7476#0 GGCGGGGCAGCGAGAAGATCGCCATGATGCGTATGGTCAACATTAGCAAGCTGTTTCGGC 1080 consensus_7476#1 -------------GAAGATCGCCATGATGCGTATGGTCAACATTAGCAAGCTGTTTCGGC 186 *********************************************** consensus_7476#0 GCGTCGGCACGACCGCGAGCGTAATCGTGAACCAGCGGATGGTGATGATGTTTTTCATGA 1140 consensus_7476#1 GCGTCGGCACGACCGCGAGCGTAATCGTGAACCAGCGGATGGTGATGATGTTTTTCATGA 246 ************************************************************ consensus_7476#0 AAAAGCTCCGGAACGCCGTCCGCCGGAGTGAGATGAAGCATTTGCGCCGCAGCACTTCGC 1200 consensus_7476#1 AAAAGCTCCGGAACGCCGTCCGCCGGAGTGAGATGAAGCATTTGCGCCGCAGCACTTCGC 306 ************************************************************ consensus_7476#0 ATAATGTTCCCTCGCACAAGGCAAAGACCGAAAGTCAATAAAATGATTATCTCCTAGCGT 1260 consensus_7476#1 ATAATGTTCCCTCGCACAAGGCAAAGACCGAAAGTCAATAAAATGATTATCTCCTAGCGT 366 ************************************************************ consensus_7476#0 CGCTGCAGGTTGCCTTACTGGTGAAAAAGAGAAAAAAAG 1299 consensus_7476#1 CGCTGCAGGTTGCCTTACTGTTAGTTT------------ 393 ******************** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||