|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7476#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1299 fasta sequence
[CCGGCAGCTGCGGCAGCGTCTTTCGTGTGTTTATTTTTGTGGTAAAAATATCACATTCTGCACCGTTTTCCGAGTGCAACGTGGTAAGGAAATTCGTTCCTG-AGCTTCGAATGAACCTTCGCACGTAAAAAGTGTTTATAACTAAATAGCTATACCAATCGCCGTACAAGTTTATCGCTTGCCTTTTGACCACAAAATGCCTTTCGCAATCGTGGAGGCACATGAAGCAGGGGATGCTAACAAACAGCTCTACGTTGTGCCGGAAGGATGGCTTTTGGATACGGAACAAACGGAAACGATTCTACTGTGGCCAAGGTGCGATGGTCTACAAATGTACAAACTGTTAACTGACGGTGAAAGTGTGGCCAACACCAAGTGGATAAAGATGAATTGCACAGTGAAAATGATTAATATACCAAACCTATCCGTTGCACATGGGCATATTTCCAAGCTGAAAGGAGAATGCATTGAACCATCGGAAGACACTGCTTCGCAAGTAGTTCAAAAATGTCCAACGCCTAGCCCTTTGGAGGAAGAATGTTCTAACGTGCCTTGCGAAGAAGATATCAGTGAGCAAAAAGCTGAATCATCCTTTTCCAAAATTCACACAAAAACAATGGAAATTGCACCCCGCATCGGTGCGAACAATATCCGAGAAAGATTTCTTCCACTTTCTGCTAAAAGTTAATCAAAAAATCACCCTGCTGGAGGCGTTGGTTCGCAAAATTACCGATAAAGTGGTTTACCTCGAAGCACAGGCGCAAATGCTCCAAAGCCGACTTAATTCTCGAACTGCCCCAAAGCAGCCCATGATAAGCGATGTAGACTTTAAGCAAATCGATTGCTTGCAGAGCCTAGAAAGCTTCAACGAAAAACTACTCGACAAAGAGTATCAGGACAAAATGTACCAATGGCTAAACGCGCAGATTACCGAAGTGAAGAGCGAAAACCGCATGATAGAGGCAATCGATATACTGTTTACCAAGCGGTTCATGACAAAGTGCAGCTGGACGGGGGTAGGGCGGGGCAGCGAGAAGATCGCCATGATGCGTATGGTCAACATTAGCAAGCTGTTTCGGCGCGTCGGCACGACCGCGAGCGTAATCGTGAACCAGCGGATGGTGATGATGTTTTTCATGAAAAAGCTCCGGAACGCCGTCCGCCGGAGTGAGATGAAGCATTTGCGCCGCAGCACTTCG-CATAATGTTCCCTCGCACAAGGCAAAGACCGAAAGTCAATAAAATGATTATCTCCTAGCGTCGCTGCAGGTTGCCTTACTGGTGAAAAAGAGAAAAAAAG]
[+] EMBL BM616187 [CCGGCAGCTGCGGCAGCGTCTTTCGTGTGTTTATTTTTGTGGTAAAAATATCACATTCTGCACCGTTTTCCGAGTGCAACGTGGTATGGAAATTCGTTCCTG AGCTTCGAATGAACCTTCGCACGTAAAAAGTGTTTATAACTAAATAGCTATACCAATCGCCGTACAAGTTTATCGCTTGCCTTTTGACCACAAAATGCCTTTCGCAATCGTGGAGGCACATGAAGCAGGGGATGCTAACAAACAGCTCTACGTTGTGCCGGAAGGGTGGCTTTTGGATACGGAACAAACGGAAACGATTCTACTGTGGCCAAGGTGCAATGGTCTACAAATGTACAAACTGTTAACTGACGGTGAAAGTGTGGCCAACACCAAGTGGATAAAGATGAATTGCACAGTGAAAATGATTAATATACCAAACCTATCCGTTGCACATGGGCATATTTCCAAGCTGAAAGGAGAATGCATTGAACCATCGGAAGACACTGCTTCGCAAGTAGTTCAAAAATGTCCAACGCCTAGCCCTTTGGAGGAAGAATGTTCTAACGTGCCTTGCGAAGAAGATATCAGTGAGCAAAAAGCTGAATCATCCTTTTCCAAAATTCACACAAAAACAATGGAAATTGCACCCCGCATCGGTGCGAACAATATCCGAGAAAGATTTCTTCC ]
[+] EMBL BM588483 [ ccgcccacGCGTC CG GTGTTTATTTTTGTGGTAAAAATATTGCATTCTGTACCGTTTTCCGAGTGTAACGTAGTTAGGAAATTCGTTCCTA AGCTTCAAATGAACCTCCGCACGTTAAAAGTGTTTATA GAATAGCTATACCAATCGGTGTATAAGTTTATCGCCTGTCTTTTGACCACAAAATGCCTTTCGCAATCGTGGAGGCACATGATGCGGGAGATGCTAACAAACAGCTCTACGTTGTGCCGGAAGGATGGCTTTTGGATACGGAACAGACGGAAACGATTCTACTGTGGCCAAGGTGCGATGGTCTAGAAATGTACAAACTGTTAACCGACAGTGAAAGTGTGGCCAACACCAAGTGGATAAAGATGAATTGCACAGTGAAAATGATTAATATACCAAACCTATCCGTTGCACATGGGCATGTTTCCAAGCTGAAAGGAGAATGCATTGAACCTTCGGAAGACACTGCTTCGCAAGTAGTTCAAAAATGTCCAACGCCTATCCCCTTGGAGGAAGAATGCTCTAACGTGCCTTGCGAAGAAGATATCAGTGAGCAAAAAGCTGAATCATCCTTTTCCAAAACTCACACAAAAACAATGGAAATTGCA CCCGCATCGGTGCGAACAATATCCGAGAAAGATTTCTTCAACTTTCTGCTAAAAGTTAATCAAAAAATCATCCTG ]
[+] EMBL BX626362 [ acGGAAATTCG AATGAACCTTCGAATGAACCTTCGCNCGTANAAAGTGTTTATAACTAAATAGCTATACCAATCGCCGTACAAGTTTATCGCTTGCCTTTTGACCACAAAATGCCTTTCGCAATCGTGGAGGCACATGAAGCAGGGGATGCTAACAAACAGCTCTACGTTGTGCCGGAAGGATGGCTTTTGGATACGGAACAAACGGAAACGATTCTACTGTGGCCAAGGCGCGANGGTCTACAAATG ]
[+] EMBL BX609132 [ ATCCGAGAAAGATTTCTTCCACTTTCTGCTAAAAGTTAATCAAAAAATCACCCTGCTGGAGGCGTTGGTTCGCAAAATTACCGATAAAGTGGTTTACCTCGAAGCACAGGCGCAAATGCTCCAAAGCCGACTTAATTCTCGAACTGCCCCAAAGCAGCCCATGATAAGCGATGTAGACTTTAAGCAAATCGATTGCTTGCAGAGCCTAGAAAGCTTCAACGAAAAACTACTCGACAAAGAGTATCAGGACAAAATGTACCAATGGCTAAACGCGCAGATTACCGAAGTGAAGAGCGAAAACCGCATGATAGAGGCAATCGATATACTGTTTACCAAGCGGTTCATGACAAAGTGCAGCTGGACGGGGGTAGGGCGGGGCAGCGAGAAGATCGCCATGATGCGTATGGTCAACATTAGCAAGCTGTTTCGGCGCGTCGGCACGACCGCGAGCGTAATCGTGAACCAGCGGATGGTGATGATGTTTTTCATGAAAAAGCTCCGGAACGCCGTCCGCCGGAGTGAGATGAAGCATTTGCGCCGCAGCACTTCG CATAATGTTCCCTCGCACAAGGCAAAGACCGAAAGTCAATAAAATGATTATCTCCTAGCGTCGCTGCAGGTTGCCTTA ]
[+] EMBL BX610410 [ ATCCGAGAAAGATTTCTTCCACTTTCTGCTAAAAGTTAATCAAAAAATCACCCTGCTGGAGGCGTTGGTTCGCAAAATTACCGATAAAGTGGTTTACCTCGAAGCACAGGCGCAAATGCTCCAAAGCCGACTTAATTCTCGAACTGCCCCAAAGCAGCCCATGATAAGCGATGTAGACTTTAAGCAAATCGATTGCTTGCAGAGCCTAGAAAGCTTCAACGAAAAACTACTCGACAAAGAGTATCAGGACAAAATGTACCAATGGCTAAACGCGCAGATTACCGAAGTGAAGAGCGAAAACCGCATGATAGAGGCAATCGATATACTGTTTACCAAGCGGTTCATGACAAAGTGCAGCTGGACGGGGGTAGGGCGGGGCAGCGAGAAGATCGCCATGATGCGTATGGTCAACATTAGCAAGCTGTTTCGGCGCGTCGGCACGACCGCGAGCGTAATCGTGAACCA ]
[-] EMBL AGA280583 [ aGCAGCACTTCGCCCTCATGTTCCCTCGCACAAGGCAAAGACCGAAATTCAATAAAATGATTATCTCCTAGCGTCGTTGCAGGTTGCCTTGCTGGTGAAAAAGAGAAAAAAAG]
consensusID : consensus_7476#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGAGAGTATCAGGACAAAATGTACCAATGGCTAAACGCGCAGATTACCGAAGTGAAGAGCGAAAACCGCATGATAGAGGCAATCGATATACTGTTTACCAAGCGGTTCATGACAGAAGATCGCCATGATGCGTATGGTCAACATTAGCAAGCTGTTTCGGCGCGTCGGCACGACCGCGAGCGTAATCGTGAACCAGCGGATGGTGATGATGTTTTTCATGAAAAAGCTCCGGAACGCCGTCCGCCGGAGTGAGATGAAGCATTTGCGCCGCAGCACTTCGCATAATGTTCCCTCGCACAAGGCAAAGACCGAAAGTCAATAAAATGATTATCTCCTAGCGTCGCTGCAGGTTGCCTTACTGTTAGTTT]
[+] EMBL BM607209 [CCGCGGACGCGTGGGCGGACGCGTGGGAGAGTATCAGGACAAAATGTACCAATGGCTAAACGCGCAGATTACCGAAGTGAAGAGCGAAAACCGCATGATAGAGGCAATCGATATACTGTTTACCAAGCGGTTCATGACAGAAGATCGCCATGATGCGTATGGTCAACATTAGCAAGCTGTTTCGGCGCGTCGGCACGACCGCGAGCGTAATCGTGAACCAGCGGATGGTGATGATGTTTTTCATGAAAAAGCTCCGGAACGCCGTCCGCCGGAGTGAGATGAAGCATTTGCGCCGCAGCACTTCGCATAATGTTCCCTCGCACAAGGCAAAGACCGAAAGTCAATAAAATGATTATCTCCTAGCGTCGCTGCAGGTTGCCTTACTGTTAGTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7476#0 CCGGCAGCTGCGGCAGCGTCTTTCGTGTGTTTATTTTTGTGGTAAAAATATCACATTCTG 60
consensus_7476#1 ------------------------------------------------------------
consensus_7476#0 CACCGTTTTCCGAGTGCAACGTGGTAAGGAAATTCGTTCCTGAGCTTCGAATGAACCTTC 120
consensus_7476#1 ------------------------------------------------------------
consensus_7476#0 GCACGTAAAAAGTGTTTATAACTAAATAGCTATACCAATCGCCGTACAAGTTTATCGCTT 180
consensus_7476#1 ------------------------------------------------------------
consensus_7476#0 GCCTTTTGACCACAAAATGCCTTTCGCAATCGTGGAGGCACATGAAGCAGGGGATGCTAA 240
consensus_7476#1 ------------------------------------------------------------
consensus_7476#0 CAAACAGCTCTACGTTGTGCCGGAAGGATGGCTTTTGGATACGGAACAAACGGAAACGAT 300
consensus_7476#1 ------------------------------------------------------------
consensus_7476#0 TCTACTGTGGCCAAGGTGCGATGGTCTACAAATGTACAAACTGTTAACTGACGGTGAAAG 360
consensus_7476#1 ------------------------------------------------------------
consensus_7476#0 TGTGGCCAACACCAAGTGGATAAAGATGAATTGCACAGTGAAAATGATTAATATACCAAA 420
consensus_7476#1 ------------------------------------------------------------
consensus_7476#0 CCTATCCGTTGCACATGGGCATATTTCCAAGCTGAAAGGAGAATGCATTGAACCATCGGA 480
consensus_7476#1 ------------------------------------------------------------
consensus_7476#0 AGACACTGCTTCGCAAGTAGTTCAAAAATGTCCAACGCCTAGCCCTTTGGAGGAAGAATG 540
consensus_7476#1 ------------------------------------------------------------
consensus_7476#0 TTCTAACGTGCCTTGCGAAGAAGATATCAGTGAGCAAAAAGCTGAATCATCCTTTTCCAA 600
consensus_7476#1 ------------------------------------------------------------
consensus_7476#0 AATTCACACAAAAACAATGGAAATTGCACCCCGCATCGGTGCGAACAATATCCGAGAAAG 660
consensus_7476#1 ------------------------------------------------------------
consensus_7476#0 ATTTCTTCCACTTTCTGCTAAAAGTTAATCAAAAAATCACCCTGCTGGAGGCGTTGGTTC 720
consensus_7476#1 ------------------------------------------------------------
consensus_7476#0 GCAAAATTACCGATAAAGTGGTTTACCTCGAAGCACAGGCGCAAATGCTCCAAAGCCGAC 780
consensus_7476#1 ------------------------------------------------------------
consensus_7476#0 TTAATTCTCGAACTGCCCCAAAGCAGCCCATGATAAGCGATGTAGACTTTAAGCAAATCG 840
consensus_7476#1 ------------------------------------------------------------
consensus_7476#0 ATTGCTTGCAGAGCCTAGAAAGCTTCAACGAAAAACTACTCGACAAAGAGTATCAGGACA 900
consensus_7476#1 -------------CCGCGGACGCGTGGGCGGA------CGCGTGGGAGAGTATCAGGACA 41
** * * ** * ** * * ** **************
consensus_7476#0 AAATGTACCAATGGCTAAACGCGCAGATTACCGAAGTGAAGAGCGAAAACCGCATGATAG 960
consensus_7476#1 AAATGTACCAATGGCTAAACGCGCAGATTACCGAAGTGAAGAGCGAAAACCGCATGATAG 101
************************************************************
consensus_7476#0 AGGCAATCGATATACTGTTTACCAAGCGGTTCATGACAAAGTGCAGCTGGACGGGGGTAG 1020
consensus_7476#1 AGGCAATCGATATACTGTTTACCAAGCGGTTCATGACA---------------------- 139
**************************************
consensus_7476#0 GGCGGGGCAGCGAGAAGATCGCCATGATGCGTATGGTCAACATTAGCAAGCTGTTTCGGC 1080
consensus_7476#1 -------------GAAGATCGCCATGATGCGTATGGTCAACATTAGCAAGCTGTTTCGGC 186
***********************************************
consensus_7476#0 GCGTCGGCACGACCGCGAGCGTAATCGTGAACCAGCGGATGGTGATGATGTTTTTCATGA 1140
consensus_7476#1 GCGTCGGCACGACCGCGAGCGTAATCGTGAACCAGCGGATGGTGATGATGTTTTTCATGA 246
************************************************************
consensus_7476#0 AAAAGCTCCGGAACGCCGTCCGCCGGAGTGAGATGAAGCATTTGCGCCGCAGCACTTCGC 1200
consensus_7476#1 AAAAGCTCCGGAACGCCGTCCGCCGGAGTGAGATGAAGCATTTGCGCCGCAGCACTTCGC 306
************************************************************
consensus_7476#0 ATAATGTTCCCTCGCACAAGGCAAAGACCGAAAGTCAATAAAATGATTATCTCCTAGCGT 1260
consensus_7476#1 ATAATGTTCCCTCGCACAAGGCAAAGACCGAAAGTCAATAAAATGATTATCTCCTAGCGT 366
************************************************************
consensus_7476#0 CGCTGCAGGTTGCCTTACTGGTGAAAAAGAGAAAAAAAG 1299
consensus_7476#1 CGCTGCAGGTTGCCTTACTGTTAGTTT------------ 393
******************** *
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||