|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7478#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1541 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGTTTCAATACTTTTTGTGTACTTTTTTTCTAACTGTTGTCTTTCTCTCTCTCTCTCAAACCCATCCCGCACACACATACACACCATCCCTAGTGTTCTGAATTGTTTGTATGTTTTTTTTTCTCTCTCACTGTCTCGGGTCTTCTCTATGCTAATGTCCATATGCTCTCATTCCTTACCAGGATGAAAACTACATTTCTATCCACAGCAAAGATAAAAGGAAATGCAAACACATTTTTATGTTTTTTTTAAAGATATATATCATATTTAATCATAAAGTGTGGCATATTTCCATCTTTTTATCATGGTTTTGTTTCATGATAGAATTTTCCACGTTTTCATTTACGCATGAAGCAAAGCATATATATTTAAAAAATAAACGAAAACACAACACTACTATCTTACACTTACACGCCCTATCTACTCATAATTACATGCACCCAACCCAACCTCTGCAACAAGTACACTCCTTCACACGTACATATACGTATACGCATACAATTACATATATATACACACACATGCATACACACGAACACACGAACGATTGCGTTAATAGTAGGTAAATAACATATTACAAAGCTAATATGTTGTCGATTTTATGTGTTATTACTAGTGAACTGAGGCTTCACCCACACAGCTGATGGGTGGGTACGGCCAGTGGGTCGCCGTACCGTCGATTGTCGTTTTAGTTCACTTTCACTGATGAAAGAAAACAGTAAACGTTCTCCCCCAGACACACACACACACACAAACACACACGTAGACAGCAAACACTTGACCCGAAATACGATCGACCGAACCAACGTTTACGTCTTGGACACGCCGAAAGAACACTCGATTGTCTCTTTGTGTGTTGTGTCCGTTTTCCGCCACAGCATCGCAAAGGTTCACGGGCATTCGTTTCTATCACACTCCCCTTTAGCCGCGCTAAGTATGCCTCATAAAAGCAGATAATCGATGGCATAGCAAAGAGAGTACGTAGCAAGAGATTTTGAAACAAATAAACAGCTATATGGTAAAGTTAATCAAAAGTATGACTGACATATAGGCCCGCCCCTCCCTGTGTGGCACTCATATCTCGTTACTCTGTGTTACGCCTAATGTATTAACTAAACAAAACAAAATCATAAAGCATAAGGGCATATGTAAGCTAACGTGCGCTGCTGACGATTGCGTACCGGTTGCGCAAACCACACATACACATTGGAAATGCGCACAGTGCGAACGCAAACATTCGAAACAATAGCTAATAATGTATGCACAGAGCATCACCCCGCGTGTCCGCCCAGGCAAAAGGCAGGCAGAGGGCGGCAATATCTGTAAACAGCAGTTTTGATCGATTGTGTGCGAAGTGAGAGGAGGGCGGCGGTGGCGAAATGAGTGTAAATGTAAGCGAATCGATTCTCGATGTAACGCGCAGACTTATTACTAAAGTAGAGTAAAGAGGGAGATTATGCAAGCATAAATCAAATCCGTAAATAAGTGTGNTAAACATTATAATTCGAAAATAAAA]
[+] EMBL BM610129 [CCGCCCACGCGTCCGCCCACGCGTCCGTTTCAATACTTTTTGTGTACTTTTTTTCTAACTGTTGTCTTTCTCTCTCTCTCTCAAACCCATCCCGCACACACATACACACCATCCCTAGTGTTCTGAATTGTTTGTATGTTTTTTTTTCTCTCTCACTGTCTCGGGTCTTCTCTATGCTAATGTCCATATGCTCTCATTCCTTACCAGGATGAAAACTACATTTCTATCCACAGCAAAGATAAAAGGAAATGCAAACACATTTTTATGTTTTTTTTAAAGATATATATCATATTTAATCATAAAGTGTGGCATATTTCCATCTTTTTATCATGGTTTTGTTTCATGATAGAATTTTCCACGTTTTCATTTACGCATGAAGCAAAGCATATATATTT ]
[+] EMBL BX622172 [ ATGATAGAATTTTCCACGTTTTCATTTACGCATGAAGCAAAGCATATATATTTAAAAAATAAACGAAAACACAACACTACTATCTTACACTTACACGCCCTATCTACTCATAATTACATGCACCCAACCCAACCTCTGCAACAAGTACACTCCTTCACACGTACATATACGTATACGCATACAATTACATATATATACACACACATGCATACACACGAACACACGAACGATTGCGTTAATAGTAGGTAAATAACATATTACAAAGCTAATATGTTGTCGATTTTATGTGTTATTACTAGTGAACTGAGGCTTCACCCACACAGCTGATGGGTGGGTACGGCCAGTGGGTCGCCGTACCGTCGATTGTCGTTTTAGTTCACTTTCACTGATGAAAGAAAACAGTAAACGTTCTCCCCCAGACACACACACACACACAAACACACACGTAGACAGCAAACACTTGACCCGAAATACGATCGACCGAACCAACGTTTACGTCTTGGACACGCCGAAAGAACACTCGATTGTCTCTTTGTGTGTTGTGTCCGTTTTCCGCCACAGCATCGCAAAGGTTCACGGGCATTCGTTTCTATCACACTCCCCTTTAGCCGCGCTAAGTATGCCTCATAAAAGCAGATAATCGATGGCATAGCAAAGAGAGTACGTAGCAAGAGATTTTGAAACAAATAAACAGCTATATGGTAAAGTTAATCAAAAGTATGACTGACATATAG ]
[+] EMBL BM650078 [ ccgCACAACACTACTATCTTACACTTACACGCCCTATCTACTCATAATTACATGCACCCAACCCAACCTCTGCAACAAGTACACTCCTTCACACGTACATATACGTATACGCATACAATTACATATATATACACACACATGCATACACACGAACACACGAACGATTGAGTTAATAGTAGGTAAATAACATATTACAAAGCTAATATGTTGTCGATTTTATGTGTTATTACTAGTGAACTGAGGCTTCACCCACACAGCTGATGGGTGGGTACGGCCAGTGGGTCGCCGTACCGTCGATTGTCGTTTTAGTTCACTTTCACTGATGAAAGAAAACAGTAAACGTTCTCCCCCAGACACACACACACACACAAACACACACGTAGACAGCAAACACTTGACCCGAAATACGATCGACCGAACCAACGTTTACGTCTTGGACACGCCGAAAGAACACTCGATTGTCTCTTTGTGTGTTGTGTCCGTTTTCCGCCACAGCATCGCAAAGGTTCACGGGCATTCGTTTCTATCACACTCCCCTTTAGCCGCGCTAAGTATGCCTCATAAAAGCAGATAATCGATGGCATAGCAAAGAGAGTACGTAGCAAGAGATTTTGAAACAAATAAACAGCTATATGGTAAAGTTAATCAAAAGTA ]
[+] EMBL BM623391 [ ccgGGTAAATAACATATTACAAAGCTAATATGTTGTCGATTTTATGTGTTATTACTAGTGAACTGAGGCTTCACCCACACAGCTGATGGGTGGGTACGGCCAGTGGGTCGCCGTACCGTCGATTGTCGTTTTAGTTCACTTTCACTGATGAAAGAAAACAGTAAACGTTCTCCCCCAG ACACACACACACAAACACACACATAGACAGCAAACACTTGACCCGAAATACGATCGACCGAACCAACGTTTACGTCTTGGACACGCCGAAAGAACACTCGATTGTCTCTTTGTGTGTTGTGTCCGTTTTCCGCCACAGCATCGCAAAGGTTCACGGGCATTCGTTTCTATCACACTCCCCTTTAGCCGCGCTAAGTATGCCTCATAAAAGCAGATAATCGATGGCATAGCAAAGAGAGTACGTAGCAAGAGATTTTGAAACAAATAAACAGCTATATGGTAAAGTTAATCAAAAGTATGACTGACATATAGGCCCGCCCCTCCCTGTGTGGCACTCATATCTCGTTACTCTGTGTTACGCCTAATGTATTAACTAAACAAAACAAAATCATAAAGCATAAGGGCATATGTAAGCTAACGTGCGCTGCTGACGATTGCGTACCGGTTGCGCAAACCACACATACACATTGGAAATGCGCACAGTGCGAACGC ]
[+] EMBL BX622921 [ CGAACCAACGTTTACGTCTTGGACACGCCGAAAGAACACTCGATTGTCTCTTTGTGTGTTGTGTCCGTTTTCCGCCACAGCATCGCAAAGGTTCACGGGCATTCGTTTCTATCACACTCCCCTTTAGCCGCGCTAAGTATGCCTCATAAAAGCAGATAATCGATGGCATAGCAAAGAGAGTACGTAGCAAGAGATTTTGAAACAAATAAACAGCTATATGGTAAAGTTAATCAAAAGTATGACTGACATATAGGCCCGCCCCTCCCTGTGTGGCACTCATATCTCGTTACTCTGTGTTACGCCTAATGTATTAACTAAACAAAACAAAATCATAAAGCATAAGGGCATATGTAAGCTAACGCGCGCTGCTGACGATTGCGAACCGGTTGCGCAAACCACACATACACATTGGAAATGCGCACAGTGCGAACGCAAACATTCGAAACAATAGCTAATAATGTATGCACAGAGCATCACCCCGCGTGTCCGCCCAGGCAAAAGGCAGGCAGAGGGCGGCAATATCTGTAAACAGCAGTTTTGATCGATTGTGTGCGAAGTGAGAGGAGGGCGGCGGTGGCGAAATGAGTGTAAATGTAAGCGAATCGATTCTCGATGTAACGCGCAGACTTATTACTAAAGTAGAGTAAAGAGGGAGATTATGCAAGCATAAATCAAATCCGTAAATAAGTGTGNTAAACATTATAATTCGAAAATAAAA]
[-] EMBL BX614547 [ ACATTGGAAATGCGCACAGTGCGAACGCAAACATTCGAAACAATAGCTAATAATGTATGCACAGAGCATCTCCCCGCGTGTCCGCCCTGGC ]
consensusID : consensus_7478#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence
[CCGTGCTCTCATTCCTTACCAGGATGAAAACTACTTTTCTATCCACAAAAAAGATAAAAGGAAATGCAAACACATTTTTATGTTTTTTTTTAAAGATATATATCATATTTAATCATAAAGTGTGGCATATTTCCATCTTTTTATCATGGTTTTGTTTCATGATAGAATTTTCCACGTTTTCATTTACGCATGAAGCAAATTATATATTTAAAAAATAAACGAAAACACAACACTACTATCTTTTTTTACACGCCCTATCTACTCATAATTACATGCACCCATTTTTTTCTCCGCCCCCAGCACAGTGGGGGGGACGTACATATACGTATACGCATACAATTACATATATATACACACACACATATACACACGAACACACGAACGATTGCGTTAATAGTAGGTAAATAACATATATACAAAGCTAATATGTTGTCGATTTTATGTGTTATTACTAGTGAACTGAGGCTTCACCCACAC]
[+] EMBL BM638799 [CCGTGCTCTCATTCCTTACCAGGATGAAAACTACTTTTCTATCCACAAAAAAGATAAAAGGAAATGCAAACACATTTTTATGTTTTTTTTTAAAGATATATATCATATTTAATCATAAAGTGTGGCATATTTCCATCTTTTTATCATGGTTTTGTTTCATGATAGAATTTTCCACGTTTTCATTTACGCATGAAGCAAATTATATATTTAAAAAATAAACGAAAACACAACACTACTATCTTTTTTTACACGCCCTATCTACTCATAATTACATGCACCCATTTTTTTCTCCGCCCCCAGCACAGTGGGGGGGACGTACATATACGTATACGCATACAATTACATATATATACACACACACATATACACACGAACACACGAACGATTGCGTTAATAGTAGGTAAATAACATATATACAAAGCTAATATGTTGTCGATTTTATGTGTTATTACTAGTGAACTGAGGCTTCACCCACAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7478#0 CCGCCCACGCGTCCGCCCACGCGTCCGTTTCAATACTTTTTGTGTACTTTTTTTCTAACT 60
consensus_7478#1 ------------------------------------------------------------
consensus_7478#0 GTTGTCTTTCTCTCTCTCTCTCAAACCCATCCCGCACACACATACACACCATCCCTAGTG 120
consensus_7478#1 ------------------------------------------------------------
consensus_7478#0 TTCTGAATTGTTTGTATGTTTTTTTTTCTCTCTCACTGTCTCGGGTCTTCTCTATGCTAA 180
consensus_7478#1 ------------------------------------------------------------
consensus_7478#0 TGTCCATATGCTCTCATTCCTTACCAGGATGAAAACTACATTTCTATCCACAGCAAAGAT 240
consensus_7478#1 -----CCGTGCTCTCATTCCTTACCAGGATGAAAACTACTTTTCTATCCACAAAAAAGAT 55
******************************* ************ ******
consensus_7478#0 AAAAGGAAATGCAAACACATTTTTATGTTTTTTTT-AAAGATATATATCATATTTAATCA 299
consensus_7478#1 AAAAGGAAATGCAAACACATTTTTATGTTTTTTTTTAAAGATATATATCATATTTAATCA 115
*********************************** ************************
consensus_7478#0 TAAAGTGTGGCATATTTCCATCTTTTTATCATGGTTTTGTTTCATGATAGAATTTTCCAC 359
consensus_7478#1 TAAAGTGTGGCATATTTCCATCTTTTTATCATGGTTTTGTTTCATGATAGAATTTTCCAC 175
************************************************************
consensus_7478#0 GTTTTCATTTACGCATGAAGCAAAGCATATATATTTAAAAAATAAACGAAAACACAACAC 419
consensus_7478#1 GTTTTCATTTACGCATGAAGCAAA--TTATATATTTAAAAAATAAACGAAAACACAACAC 233
************************ *********************************
consensus_7478#0 TACTATCTTACACTTACACGCCCTATCTACTCATAATTACATGCACCCAACCCAACCTCT 479
consensus_7478#1 TACTATCTTTT-TTTACACGCCCTATCTACTCATAATTACATGCACCCATTTTTTTCTCC 292
********* ************************************ ***
consensus_7478#0 GCAACAAGTACACTCCTTCACACGTACATATACGTATACGCATACAATTACATATATATA 539
consensus_7478#1 GCCCCCAGCACAGTGGGGGGGACGTACATATACGTATACGCATACAATTACATATATATA 352
** * ** *** * ***************************************
consensus_7478#0 CACACACATGCATACACACGAACACACGAACGATTGCGTTAATAGTAGGTAAATAACATA 599
consensus_7478#1 CACACACACATATACACACGAACACACGAACGATTGCGTTAATAGTAGGTAAATAACATA 412
******** *************************************************
consensus_7478#0 T-TACAAAGCTAATATGTTGTCGATTTTATGTGTTATTACTAGTGAACTGAGGCTTCACC 658
consensus_7478#1 TATACAAAGCTAATATGTTGTCGATTTTATGTGTTATTACTAGTGAACTGAGGCTTCACC 472
* **********************************************************
consensus_7478#0 CACACAGCTGATGGGTGGGTACGGCCAGTGGGTCGCCGTACCGTCGATTGTCGTTTTAGT 718
consensus_7478#1 CACAC------------------------------------------------------- 477
*****
consensus_7478#0 TCACTTTCACTGATGAAAGAAAACAGTAAACGTTCTCCCCCAGACACACACACACACACA 778
consensus_7478#1 ------------------------------------------------------------
consensus_7478#0 AACACACACGTAGACAGCAAACACTTGACCCGAAATACGATCGACCGAACCAACGTTTAC 838
consensus_7478#1 ------------------------------------------------------------
consensus_7478#0 GTCTTGGACACGCCGAAAGAACACTCGATTGTCTCTTTGTGTGTTGTGTCCGTTTTCCGC 898
consensus_7478#1 ------------------------------------------------------------
consensus_7478#0 CACAGCATCGCAAAGGTTCACGGGCATTCGTTTCTATCACACTCCCCTTTAGCCGCGCTA 958
consensus_7478#1 ------------------------------------------------------------
consensus_7478#0 AGTATGCCTCATAAAAGCAGATAATCGATGGCATAGCAAAGAGAGTACGTAGCAAGAGAT 1018
consensus_7478#1 ------------------------------------------------------------
consensus_7478#0 TTTGAAACAAATAAACAGCTATATGGTAAAGTTAATCAAAAGTATGACTGACATATAGGC 1078
consensus_7478#1 ------------------------------------------------------------
consensus_7478#0 CCGCCCCTCCCTGTGTGGCACTCATATCTCGTTACTCTGTGTTACGCCTAATGTATTAAC 1138
consensus_7478#1 ------------------------------------------------------------
consensus_7478#0 TAAACAAAACAAAATCATAAAGCATAAGGGCATATGTAAGCTAACGTGCGCTGCTGACGA 1198
consensus_7478#1 ------------------------------------------------------------
consensus_7478#0 TTGCGTACCGGTTGCGCAAACCACACATACACATTGGAAATGCGCACAGTGCGAACGCAA 1258
consensus_7478#1 ------------------------------------------------------------
consensus_7478#0 ACATTCGAAACAATAGCTAATAATGTATGCACAGAGCATCACCCCGCGTGTCCGCCCAGG 1318
consensus_7478#1 ------------------------------------------------------------
consensus_7478#0 CAAAAGGCAGGCAGAGGGCGGCAATATCTGTAAACAGCAGTTTTGATCGATTGTGTGCGA 1378
consensus_7478#1 ------------------------------------------------------------
consensus_7478#0 AGTGAGAGGAGGGCGGCGGTGGCGAAATGAGTGTAAATGTAAGCGAATCGATTCTCGATG 1438
consensus_7478#1 ------------------------------------------------------------
consensus_7478#0 TAACGCGCAGACTTATTACTAAAGTAGAGTAAAGAGGGAGATTATGCAAGCATAAATCAA 1498
consensus_7478#1 ------------------------------------------------------------
consensus_7478#0 ATCCGTAAATAAGTGTGNTAAACATTATAATTCGAAAATAAAA 1541
consensus_7478#1 -------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||