These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7491#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1639 fasta sequence [CACCAACGATGGCGCCGACCGTGCAAAACGGTGCGAACGGAGCTGATAAGCGTTCCCGTTCGTCAGCAGGAGCGCAGGTCGGAGCTAATTTCCCGGGTGAAATATTGCAACACGCTGCCGGACATTCCGTTCGATCTGAAGTTCATCACGTACCCGTTCGAGAATGACCGCTTCATCCAGTACAATCCGACCTCGCTGGAGCGGAACTATCGCTACGAGGTGCTTACCGAGCACGACCTGGGCGTCACCATCGATCTGATCAACCGGGACCTGTACCAGATCGACCATTCGGCCCAGCTCGATCCGGCCGACGAGAAGCTGCTCGAGGAGACACTGTACATGGACCGGGAGGCACAGATCAAGGCGATCGAGAAAACGTTCGAGGACAACACCAAGCCGATCACGACGCACTACAGCAAGCCGAGCAGACGCGCTTCAACCCGCAGACGATGGAAAAGGTGGAGGCGAAGGTGGGTTTCAACGTGAAGAAGAGTCTGCGCGAGGAGACACTGTACATGGAAGTATCCGTGCGCGCAGGTCATTTTCGATTCGGATCCGGCCCCGAGCGGCAAGAACGTGCCGGCCCAGATCGAGGAGATGTCGCAGGCCATGATTCGGGGCGTGATGGACGAGAGTCGCGAGCAGTTCGTGGCGTACTTCCTGCCGACGGACGATACGCTCGAGAAGCGGCGCCGCGATCTGGTCAACGAAACACTGTACGAGGATGAGGAGGAGTACGAGTACAAGATGGCCCGCGAGTACAACTGGAACGTGAAGAGCAAGGCGTCGAAGGGGTACGAGGAAAACTACTACCTCGTGCTGCGCCCGGACGGTATCTACTACAACGAGCTGGAGACGCGCGTCCGGCTGAGCAAGCGTCGGCAGAAGAACGCTCAGCAGCAGAGCAACACGAAGCTGGTGGTGAAGCATCGCCCGCTCAATGCTTCCGAGCACCGTATGCCAGC-TATCGCGAGCGGCAGCTTGAGCCGGCCGGCGAAGAGGACGACGAAGACATCGAGGAGGAAGAGGAAGAGGAGGACGACGAGGAGGAAGCGCAAGCAAGCCAGACGCAGGCGGGCGAAGGCAAGGGCGGAGATGGTAAGGACGATGAAAAGGCGAAGCGCGAAAGTCGGGATAGAAGTCGTTCGGGCAGCCGGTCGCGGTCCAGATCGCAGGGATCGAA-CGTTCCGGCTCGTCGCGATCCAGATCAAGATCCGGTACCAGATCTCAGTCGAGATCCGTTTCGAGAAGTCGCAGCCGATCAAAGTCGGGCAGCCGTAGCCGCAGCCGCAGCGGTTCGGGTAGTCGCAGTCGCAGCGGATCTAGAAGTCGTTCGCCAACTCGCAGCCGCAGTCGCAGCGTTTCTCGCTCACGTTCCCGATCTGGATCGCAGCGCGGATCGGCATCCCGTTCGCGATCTCGTTCCCGGTCCGGGTCTCGGTCCCGCTCCCGGTCTCGCTCGCGTTCGGGCTCGCGTTCGGGCTCCCGTTCGGCATCTGGATCACGCAGCGTTCCGGCACTCCCGACGCAGGTTCGCGCAGTGGATCGGCCAGCCGTTCGGGCAGTGAATCGGAATAAGTTCTACGCGAAAGCGCAAGCCCTTTTTATATTTCTATGCAATACAATAAACAACACTTCG] [+] EMBL CNS08OTH [CACCAACGATGGCGCCGACCGTGCAAAACGGTGCGAACGGAGCTGATAAGCGTTCCCGTTCGTCAGCAGGAGCGCAGGTCGGAGCTAATTTCCCGGGTGAAATATTGCAACACGCTGCCGGACATTCCGTTCGATCTGAAGTTCATCACGTACCCGTTCGAGAATGACCGCTTCATCCAGTACAATCCGACCTCGCTGGAGCGGAACTATCGCTACGAGGTGCTTACCGAGCACGACCTGGGCGTCACCATCGATCTGATCAACCGGGACCTGTACCAGATCGACCATTCGGCCCAGCTCGATCCGGCCGACGAGAAGCTGCTCGAGGAGACACTGTACATGGACCGGGAGGCACAGATCAAGGCGATCGAGAAAACGTTCGAGGACAACACCAAGCCGATCACGACGCACTACAGCAAGCCGAGCAGACGCGCTTCAACCCGCAGACGATGGAAAAGGTGGAGGCGAAGGTGGGTTTCAACGTGAAGAAGAGTCTGCGCGAGGAGACACTGTACATGGAAGTATCCGTGCGCGCAGGTCATTTTCGATTCGGATCCGGCCCCGAGCGGCAAGAACGTGCCGGCCCAGATCGAGGAGATGTCGCAGGCCATGATTCGGGGCGTGATGGACGAGAGTCGCGAGCAGTTCGTGGCGTACTTCCTGCCGACGGACGATACGCTCGAGAAGCGGCGCCGCGATCTGGTCAACGAAACACTGTACGAGGATGAGGAGGAGTACGAGTACAAGATGGCCCGCGAGTACAACTGGAACGTGAAGAGCAAGGCGTCGAAGGGGTACGAGGAAAACTACTACCTCGTGCTGCGCCCGGACGGTATCTACTACAACGAGCTGGAGACGCGCGTTCGGCTGAGCAAGCGTCGGCAGAAG ] [-] EMBL CNS09REH [ CGCCCGGACGGTATCTACTACAACGAGCTGGAGACGCGCGTCCGGCTGAGCAAGCGTCGGCAGAAGAACGCTCAGCAGCAGAGCAACACGAAGCTGGTGGTGAAGCATCGCCCGCTCAATGCTTCCGAGCACCGTATGCCAGC TATCGCGAGCGGCAGCTTGAGCCGGCCGGCGAAGAGGACGACGAAGACATCGAGGAGGAAGAGGAAGAGGAGGACGACGAGGAGGAAGCGCAAGCAAGCCAGACGCAGGCGGGCGAAGGCAAGGGCGGAGATGGTAAGGACGATGAAAAGGCGAAGCGCGAAAGTCGGGATAGAAGTCGTTCGGGCAGCCGGTCGCGGTCCAGATCGCAGGGATCGAA CGTTCCGGCTCGTCGCGATCCAGATCAAGATCCGGTACCAGATCTCAGTCGAGATCCGTTTCGAGAAGTCGCAGCCGATCAAAGTCGGGCAGCCGTAGCCGCAGCCGCAGCGGTTCGGGTAGTCGCAGTCGCAGCGGATCTAGAAGTCGTTCGCCAACTCGCAGCCGCAGTCGCAGCGTTTCTCGCTCACGTTCCCGATCTGGATCGCAGCGCGGATCGGCATCCCGTTCGCGATCTCGTTCCCGGTCCGGGTCTCGGTCCCGCTCCCGGTCTCGCTCGCGTTCGGGCTCGCGTTCGGGCTCCCGTTCGGCATCTGGATC ] [-] EMBL CNS08OTI [ aaACGCGCGTCCGGCTGAGCAAGCGTCGGCAGAAGAACGCTCAGCAGCAGAGCAACACGAAGCTGGTGGTGAAGCATCGCCCGCTCAATGCTTCCGAGCACCGTATG CAGCGTATCGCGAGCGGCAGCTTGAGCCGGCCGGCGAAGAGGACGACGAAGACATCGAGGAGGAAGAGGAAGAGGAGGACGACGAGGAGGAAGCGCAAGCAAGCCAGACGCAGGCGGGCGAAGGCAAGGGCGGAGATGGTAAGGACGATGAAAAGGCGAAGCGCGAAAGTCGGGATAGAAGTCGTTCGGGCAGCCGGTCGCGGTCCAGATCGCAGGGATCGAA CGTTCCGGCTCGTCGCGATCCAGATCAAGATCCGGTACCAGATCTCAGTCGAGATCCGTTTCGAGAAGTCGCAGCCGATCAAAGTCGGGCAGCCGTAGCCGCAGCCGCAGCGGTTCGGGTAGTCGCAGTCGCAGCGGATCTAGAAGTCGTTCGCCAACTCGCAGCCGCAGTCGCAGCGTTTCTCGCTCACGTTCCCGATCTGGATCGCAGCGCGGATCGGCATCCCGTTCGCGATCTCGTTCCCGGTCCGGGTCTCGGTCCCGCTCCCGGTCTCGCTCGCGTTCGGGCTCGCGTTCGGGCTCCCGTTCGGCATCTGGATCACGCAGCGTTCCGGCACTCCCGACGCAGGTTCGCGCAGTGGATCGGCCAGCCGTTCGGGCAGTGAATCGGAATAAGTTCTACGCGAAAGCGCAAGCCCTTTTTATATTTCTATGCAATACAATAAACAACACTTCG] [-] EMBL CNS09H40 [ AGGCGAAGCGCGAAAGTCGGGATAGAAGTCGTTCGGGCAGCCGGTCGCGGTCCAGATCGCAGGGATCGAACCGTTCCGGCTCGTCGCGATCCAGATCAAGATCCGGTACCAGATCTCAGTCGAGATCCGTTTCGAGAAGTCGCAGCCGATCAAAGTCGGGCAGCCGTAGCCGCAGCCGCAGCGGTTCGGGTAGTCGCAGTCGCAGCGGATCTAGAAGTCGTTCGCCAACTCGCAGCCGCAGTCGCAGCGTTTCTCGCTCACGTTCCCGATCTGGATCGCAGCGCGGATCGGCATCCCGTTCGCGATCTCGTTCCCGGTCCGGGTCTCGGTCCCGCTCCCGGTCTCGCTCGCGTTCGGGCTCGCGTTCGGGCTCCCGTTCGGCATCTG ] consensusID : consensus_7491#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 688 fasta sequence [CCGCAGCGGTCCACAATAACAGCGCGGAGCAAAGTGCGATAAGTTTTGTTACAATTACCAAATAATTGCCACCAACGATGGCGCCGACCGTGCAAAACGGTGCGAACGGAGCTGATAAGCGTCCCGTTCGTCAGCAGGAGCGCAGGTCGGAGCTAATTTCCCGGGTGAAATACTGCAACACGCTGCCGGACATTCCGTTCGATCTGAAGTTCATCACGTACCCGTTCGAGAATGACCGCTTCATCCAGTACAATCCGACCTCGCTGGAGCGGAACTATCGCTACGAGGTGCTTACCGAGCACGACCTGGGCGTCACCATCGATCTGATCAACCGGGACCTGTACCAGATCGACCATTCGGCCCAGCTCGATCCGGCCGACGAGAAGCTGCTCGAGGAGGACATTCACACGCCGCAGGACTCGATGCGCAGCAGCCGCCATGCGAAGAGCGTGTCCTGGTTGCGGAAGTCGGAGTACATCTCGACCGAGCAGACGCGCTTCAACCCGCAGACGATGGAAAAGGTGGAGGCGAAGGTGGGTTTCAACGTGAAGAAGAGTCTGCGCGAGGAGACACTGTACATGGACCGGGAGGCACAGATCAAGGCGATCGAGAAAACGTTCGAGGACAACACCAAGCCGATCACGACGCACTACAGCAAGCCGGGCGTGACGCCGGTCGAGATCATGCC] [+] EMBL BM632852 [CCGCAGCGGTCCACAATAACAGCGCGGAGCAAAGTGCGATAAGTTTTGTTACAATTACCAAATAATTGCCACCAACGATGGCGCCGACCGTGCAAAACGGTGCGAACGGAGCTGATAAGCGTCCCGTTCGTCAGCAGGAGCGCAGGTCGGAGCTAATTTCCCGGGTGAAATACTGCAACACGCTGCCGGACATTCCGTTCGATCTGAAGTTCATCACGTACCCGTTCGAGAATGACCGCTTCATCCAGTACAATCCGACCTCGCTGGAGCGGAACTATCGCTACGAGGTGCTTACCGAGCACGACCTGGGCGTCACCATCGATCTGATCAACCGGGACCTGTACCAGATCGACCATTCGGCCCAGCTCGATCCGGCCGACGAGAAGCTGCTCGAGGAGGACATTCACACGCCGCAGGACTCGATGCGCAGCAGCCGCCATGCGAAGAGCGTGTCCTGGTTGCGGAAGTCGGAGTACATCTCGACCGAGCAGACGCGCTTCAACCCGCAGACGATGGAAAAGGTGGAGGCGAAGGTGGGTTTCAACGTGAAGAAGAGTCTGCGCGAGGAGACACTGTACATGGACCGGGAGGCACAGATCAAGGCGATCGAGAAAACGTTCGAGGACAACACCAAGCCGATCACGACGCACTACAGCAAGCCGGGCGTGACGCCGGTCGAGATCATGCC] [+] EMBL CNS09H3Z [ TGATAAGCTTCCCGTTCGTCAGCAGGAGCGCAGGTCGGAGCTAATTTCCCGGGTGAAATATTGCAACACGCTGCCGGACATTCCGTTCGATCTGAAGTTCATCACGTACCCGTTCGAGAATGACCGCTTCATCCAGTACAATCCGACCTCGCTGGAGCGGAACTATCGCTACGAGGTGCTTACCGAGCACGACCTGGGCGTCACCATCGATCTGATCAACCGGGACCTGTACCAGATCGACCATTCGGCCCAGCTCGATCCGGCCGACGAGAAGCTGCTCGAGGAGGACATTCACACGCCGCA GACTCGATGCGCA CAGCCGCCATGCGAAGAGCGTGTCCTGGTTGCGGAAGTCGGAGTACATCTCGACCGAGCAGACGCGCTTCAACCCGCAGACGAT ] [+] EMBL CNS09REG [ TTCATCCAGTACAATCCGACCTCGCTGGAGCGGAACTATCGCTACGAGGTGCTTACCGAGCACGACCTGGGCGTCACCATCGATCTGATCAACCGGGACCTGTACCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7491#0 ------------------------------------------------------------ consensus_7491#1 CCGCAGCGGTCCACAATAACAGCGCGGAGCAAAGTGCGATAAGTTTTGTTACAATTACCA 60 consensus_7491#0 ---------CACCAACGATGGCGCCGACCGTGCAAAACGGTGCGAACGGAGCTGATAAGC 51 consensus_7491#1 AATAATTGCCACCAACGATGGCGCCGACCGTGCAAAACGGTGCGAACGGAGCTGATAAGC 120 *************************************************** consensus_7491#0 GTTCCCGTTCGTCAGCAGGAGCGCAGGTCGGAGCTAATTTCCCGGGTGAAATATTGCAAC 111 consensus_7491#1 GT-CCCGTTCGTCAGCAGGAGCGCAGGTCGGAGCTAATTTCCCGGGTGAAATACTGCAAC 179 ** ************************************************** ****** consensus_7491#0 ACGCTGCCGGACATTCCGTTCGATCTGAAGTTCATCACGTACCCGTTCGAGAATGACCGC 171 consensus_7491#1 ACGCTGCCGGACATTCCGTTCGATCTGAAGTTCATCACGTACCCGTTCGAGAATGACCGC 239 ************************************************************ consensus_7491#0 TTCATCCAGTACAATCCGACCTCGCTGGAGCGGAACTATCGCTACGAGGTGCTTACCGAG 231 consensus_7491#1 TTCATCCAGTACAATCCGACCTCGCTGGAGCGGAACTATCGCTACGAGGTGCTTACCGAG 299 ************************************************************ consensus_7491#0 CACGACCTGGGCGTCACCATCGATCTGATCAACCGGGACCTGTACCAGATCGACCATTCG 291 consensus_7491#1 CACGACCTGGGCGTCACCATCGATCTGATCAACCGGGACCTGTACCAGATCGACCATTCG 359 ************************************************************ consensus_7491#0 GCCCAGCTCGATCCGGCCGACGAGAAGCTGCTCGAGGAGACACTGTACATGGACCGGGAG 351 consensus_7491#1 GCCCAGCTCGATCCGGCCGACGAGAAGCTGCTCGAGGAGGACATTCACACG--CCGCAGG 417 *************************************** * *** * *** * consensus_7491#0 GCACAGATCAAGGCGATCGAGAAAACGTTCGAGGACAACA-CCAAGCCGATCACGACGCA 410 consensus_7491#1 ACTCGATGCGCAGCAGCCGC-----CATGCGAAGAGCGTGTCCTGGTTGCGGAAGTCGGA 472 * * * ** ** * * *** ** ** * * * * ** * consensus_7491#0 CTACAGCAAG-CCGAGCAGACGCGCTTCAACCCGCAGACGATGGAAAAGGTGGAGGCGAA 469 consensus_7491#1 GTACATCTCGACCGAGCAGACGCGCTTCAACCCGCAGACGATGGAAAAGGTGGAGGCGAA 532 **** * * ************************************************* consensus_7491#0 GGTGGGTTTCAACGTGAAGAAGAGTCTGCGCGAGGAGACACTGTACATGGAAGTATCCGT 529 consensus_7491#1 GGTGGGTTTCAACGTGAAGAAGAGTCTGCGCGAGGAGACACTGTACATGG----ACCGGG 588 ************************************************** * * * consensus_7491#0 GCGCGCAGGTCATTTTCGATTCGGATCCGGCCCCGAGCGGCAAGAACGTGCCGGCCCAGA 589 consensus_7491#1 AGGCACAGATCAAGG-CGATCGAGAAAACGTTC-GAG-GACAACACCAAGCCGATCACGA 645 ** *** *** **** ** * * *** * *** * * **** * ** consensus_7491#0 TCGAGGAGATGTCGCAGGCCATGATTCGGGGCGTGATGGACGAGAGTCGCGAGCAGTTCG 649 consensus_7491#1 CGCACTACAGCAAGCCGGGCGTGACGCCGGTCGAGATC-ATGCC---------------- 688 * * * ** ** * *** * ** ** *** * * consensus_7491#0 TGGCGTACTTCCTGCCGACGGACGATACGCTCGAGAAGCGGCGCCGCGATCTGGTCAACG 709 consensus_7491#1 ------------------------------------------------------------ consensus_7491#0 AAACACTGTACGAGGATGAGGAGGAGTACGAGTACAAGATGGCCCGCGAGTACAACTGGA 769 consensus_7491#1 ------------------------------------------------------------ consensus_7491#0 ACGTGAAGAGCAAGGCGTCGAAGGGGTACGAGGAAAACTACTACCTCGTGCTGCGCCCGG 829 consensus_7491#1 ------------------------------------------------------------ consensus_7491#0 ACGGTATCTACTACAACGAGCTGGAGACGCGCGTCCGGCTGAGCAAGCGTCGGCAGAAGA 889 consensus_7491#1 ------------------------------------------------------------ consensus_7491#0 ACGCTCAGCAGCAGAGCAACACGAAGCTGGTGGTGAAGCATCGCCCGCTCAATGCTTCCG 949 consensus_7491#1 ------------------------------------------------------------ consensus_7491#0 AGCACCGTATGCCAGCTATCGCGAGCGGCAGCTTGAGCCGGCCGGCGAAGAGGACGACGA 1009 consensus_7491#1 ------------------------------------------------------------ consensus_7491#0 AGACATCGAGGAGGAAGAGGAAGAGGAGGACGACGAGGAGGAAGCGCAAGCAAGCCAGAC 1069 consensus_7491#1 ------------------------------------------------------------ consensus_7491#0 GCAGGCGGGCGAAGGCAAGGGCGGAGATGGTAAGGACGATGAAAAGGCGAAGCGCGAAAG 1129 consensus_7491#1 ------------------------------------------------------------ consensus_7491#0 TCGGGATAGAAGTCGTTCGGGCAGCCGGTCGCGGTCCAGATCGCAGGGATCGAACGTTCC 1189 consensus_7491#1 ------------------------------------------------------------ consensus_7491#0 GGCTCGTCGCGATCCAGATCAAGATCCGGTACCAGATCTCAGTCGAGATCCGTTTCGAGA 1249 consensus_7491#1 ------------------------------------------------------------ consensus_7491#0 AGTCGCAGCCGATCAAAGTCGGGCAGCCGTAGCCGCAGCCGCAGCGGTTCGGGTAGTCGC 1309 consensus_7491#1 ------------------------------------------------------------ consensus_7491#0 AGTCGCAGCGGATCTAGAAGTCGTTCGCCAACTCGCAGCCGCAGTCGCAGCGTTTCTCGC 1369 consensus_7491#1 ------------------------------------------------------------ consensus_7491#0 TCACGTTCCCGATCTGGATCGCAGCGCGGATCGGCATCCCGTTCGCGATCTCGTTCCCGG 1429 consensus_7491#1 ------------------------------------------------------------ consensus_7491#0 TCCGGGTCTCGGTCCCGCTCCCGGTCTCGCTCGCGTTCGGGCTCGCGTTCGGGCTCCCGT 1489 consensus_7491#1 ------------------------------------------------------------ consensus_7491#0 TCGGCATCTGGATCACGCAGCGTTCCGGCACTCCCGACGCAGGTTCGCGCAGTGGATCGG 1549 consensus_7491#1 ------------------------------------------------------------ consensus_7491#0 CCAGCCGTTCGGGCAGTGAATCGGAATAAGTTCTACGCGAAAGCGCAAGCCCTTTTTATA 1609 consensus_7491#1 ------------------------------------------------------------ consensus_7491#0 TTTCTATGCAATACAATAAACAACACTTCG 1639 consensus_7491#1 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||