These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7492#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1088 fasta sequence [CCGCCCACGCGTCCGACAAAACGATGAAGAGTTCCTTTTGTCTATTAAGCTACTATATTTTATAGACAAAGACGTGTGTATGGATGTATGGTCATATTTCATCTTACGATTGATTAACAGCAGCCTGCATAATGTTTAGAGCAGCAGCTAGACACAAAACGAAGAAGAAATGAAGTAATTACTTAAGGTAATTACTATCAGAGATCAGAAATGTCGCTAGTAAGGTTTGAACAAAATGGCGCGTATACGCAATGTGCAATATTTGGTTCCGTTCATCCTGTTGTTTGTTTGCTTGTTTTTTTTTTTGTTAAATCCACACCAACATTTTCCTTTCCGCGACCTCCATTCTACCTACCTTCCTTTTCACGACCATTGTCTTCGAATAGTGTTTTTGTTGTGCGTTTGAAAAAAGATCGACAGCGATACACACTGCCTGCAAAACATCGGATCGTGCTTTGGGATCGACAGCATCGACAACGAACCACAAAGACCGACACTATCACAGCTCTTGTTCTTCAGTTTGTGATTACGATTAACATCTGCCCCTTGGATACGACACCCTTCCAATAGACTCAATGCAAGGTCTGGAGATTGGAGGAGGCGGTGGTAGCAGCAACGGTGGTGCGATTGGTAACGGCGGCATGGGCGGCCAGCAGCAGCAGTCTGGCGGTGGGCCCGGTTCGGTGGTGATGGGTGGCGGCGGTGCTAGCGGCATGTCCTCGTCCGGCCAGCCAACCTCACCGTACGGTATGGACATGGACGTCGGCGAAATGGAAGCTAGCGAGCTGACGTTTGATCATCTGGACGTGATGCCATCACCGCCGCAGGACAACAACCAGGTTGCCGCCTGGTACGATACCGATCTCTAAAGGGCGGACATACTTTAGCATCGATCAACTTTAGCAGCGGATGTCGCACACACACATCACAATGCAAACATGCAGGTAGAATGTTCGAAAGAACGAAAGAACAGAGGAGGGCTAGGCGATCTGCGATCTAGGTGTAGGGCGCGTCTCTGCAATAACACTTCCATTGCAAACTGGGCTATATTTGGATCATTTTATTTTACTAGTACTAACATTTTTCTT] [+] EMBL BM627358 [CCGCCCACGCGTCCGACAAAACGATGAAGAGTTCCTTTTGTCTATTAAGCTACTATATTTTATAGACAAAGACGTGTGTATGGATGTATGGTCATATTTCATCTTACGATTGATTAACAGCAGCCTGCATAATGTTTAGAGCAGCAGCTAGACACAAAACGAAGAAGAAATGAAGTAATTACTTAAGGTAATTACTATCAGAGATCAGAAATGTCGCTAGTAAGGTTTGAACAAAATGGCGCGTATACGCAATGTGCAATATTTGGTTCCGTTCATCCTGTTGTTTGTTTGCTTGTTTTTTTTTTTGTTAAATCCACACCAACATTTTCCTTTCCGCGACCTCCATTCTACCTACCTTCCTTTTCACGACCATTGTCTTCGAATAGTGTTTTTGTTGTGCGTTTGAAAAAAGATCGACAGCGATACACACTGCCTGCAAAACATCGGATCGTGCTTTGGGATCGACAGCATCGACAACGAACCACAAAGACCGACACTATCACAGCTCTTGTTCTTCAGTTTGTGATTACGATTAACATCTGCCCCTTGGATACGACACCCTTCCAATAGACTCAATGCAAGGTCTGGAGATTGGAGGAGGCGGTGG ] [+] EMBL BM633946 [ ccgGCGATACACACTGCCTGCAAAACATCGGATCGTGCTTTGGGATCGACAGCATCGACAACGAACCACAAAGACCGACACTATCACAGCTCTTGTTCTTCAGTTTGTGATTACGATTAACATCTGCCCCTTGGATACGACACCCTTCCAATAGACTCAATGCAAGGTCTGGAGATTGGAGGAGGCGGTGGTAGCAGCAACGGTGGTGCGATTGGTAACGGCGGCATGGGCGGCCAGCAGCAGCAGTCTGGCGGTGGGCCCGGTTCGGTGGTGATGGGTGGCGGCGGTGCTAGCGGCATGTCCTCGTCCGGCCAGCCAACCTCACCGTACGGTATGGACATGGACGTCGGCGAAATGGAAGCTAGCGAGCTGACGTTTGATCATCTGGACGTGATGCCATCACCGCCGCAGGACAACAACCAGGTTGCCGCCTGGTACGATACCGATCTCTAAAGGGCGGACATACTTTAGCATCGATCAACTTTAGCAGCGGATGTCGCACACACACATCACAATGCAAACATGCAGGTAGAATGTTCGAAAGAACGAAAGAACAGAGGAGGGCTAGGCGATCTGCGATCTAGGTGTAGGGCGCGTCTCTGCAATAACACTTCCATTGCAAACTGGGCTATATTTGGATCATTTTATTTTACTAGTACTAACATTTTTCTT] consensusID : consensus_7492#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 849 fasta sequence [CCGCCCACGCGTCCGAGGGTACGGTCGGTGCACTTCACATTCTCGCCAAGGAGGAGTATAACCGACAGGTCATCCGCTCGCAGAACGTTATTCCGATCTTCGTCCAGTTGCTGTTCTACAACGACATCGAAAACATTCAGCGTGTGGCCGCTGGTGTACTTTGCGAGCTGGCTGTCGACAAGGAGGTGGCCGAAATGATCGAGGCTGAGGGAGCTACTGCACCGCTTACCGAGTTGCTCAACTCGGCAAATGAAGGTGTCGCCACATACGCCGCAGCCGTACTGTTCAAGATGAGCGAGGACAAGTCGATGGATTACAAGAAGCGCTTCTCCAGCGAGCTGACCACCTTGCCCGTGTTTCGCGACGACAGCATGTGGAACAACGGCGAACTCGGTATTGGACCGGACCTGCAGGACATCCTGTCCCCCGAGCAGGCATACGAAGGTCTATACGGACAAGGGCCGGCGAGCGTACACAGCTCGCACGGTGGCCGTGCGTTCCAGCAAGGATACGACACCCTTCCAATAGACTCAATGCAAGGTCTGGAGATTGGAGGAGGCGGTGGTAGCAGCAACGGTGGTGCGACTGGTAACGGCGGCATGGGCGGCCAGCAGCAGCAGTCTGGCGGTGGG-CCCGGTTCGGTGGTGATGGGTGGCGGCGGTGCTAGCGGCATGTCCTCGTCCGGCCAGCCAACCTCACCGTACGGTATGGACATGGACGTCGGCGAAATGGAAGCTAGCGAGCTGACGTTTGATCATCTGGACGTGATGCCATCACCGCCGCAGGACAACACCAGGTTGCCGCCTGGTACGATACCGATCTTTAANGGCGGACATTCTTTACATCGAT] [+] EMBL BM585285 [CCGCCCACGCGTCCGAGGGTACGGTCGGTGCACTTCACATTCTCGCCAAGGAGGAGTATAACCGACAGGTCATCCGCTCGCAGAACGTTATTCCGATCTTCGTCCAGTTGCTGTTCTACAACGACATCGAAAACATTCAGCGTGTGGCCGCTGGTGTACTTTGCGAGCTGGCTGTCGACAAGGAGGTGGCCGAAATGATCGAGGCTGAGGGAGCTACTGCACCGCTTACCGAGTTGCTCAACTCGGCAAATGAAGGTGTCGCCACATACGCCGCAGCCGTACTGTTCAAGATGAGCGAGGACAAGTCGATGGATTACAAGAAGCGCTTCTCCAGCGAGCTGACCACCTTGCCCGTGTTTCGCGACGACAGCATGTGGAACAACGGCGAACTCGGTATTGGACCGGACCTGCAGGACATCCTGTCCCCCGAGCAGGCATACGAAGGTCTATACGGACAAGGGCCGGCGAGCGTACACAGCTCGCACGGTGGCCGTGCGTTCCAGCAAGGATACGACACCCTTCCAATAGACTCAATGCAAGGTCTGGAGATTGGAGGAGGCGGTGGTAGCAGCAACGGTGGTGCGATTGGTAACGGCGGCATGGGCGGCCAGCAGCAGCAGTCTGGCGGTGGGCCCCGGTTCGGTGGTGATGGGTGGCGGCGGTGCT ] [+] EMBL BX620784 [ TATTCCGATCTTCGTCCAGTTGCTGTTCTACAACGACATCGAAAACATTCAGCGTGTGGCCGCTGGTGTACTTTGCGAGCTGGCTGTCGACAAGGAGGTGGCCGAAATGATCGAGGCTGAGGGAGCTACTGCACCGCTTACCGAGTTGCTCAACTCGGCAAATGAAGGTGTCGCCACATACGCCGCAGCCGTACTGTTCAAGATGAGCGAGGACAAGTCGATGGATTACAAGAAGCGCTTCTCCAGCGAGCTGACCACCTTGCCCGTGTTTCGCGACGACAGCATGTGGAACAACGGCGAACTCGGTATTGGACCGGACCTGCAGGACATCCTGTCCCCCGAGCAGGCATACGAAGGTCTATACGGACAAGGGCCGGCGAGCGTACACAGCTCGCACGGTGGCCGTGCGTTCCAGCAAGGATACGACACCCTTCCAATAGACTCAATGCAAGGTCTGGAGATTGGAGGAGGCGGTGGTAGCAGCAACGGTGGTGCGACTGGTAACGGCGGCATGGGCGGCCAGCAGCAGCAGTCTGGCGGTGGG CCCGGTTCGGTGGTGATGGGTGGCGGCGGTGCTAGCGGCATGTCCTCGTCCGGCCAGCCAACCTCACCGTACGGTATGGACATGGACGTCGGCGAAATGGAAGCTAGCGAGCTGACGTTTGATCATCTGGACGTGATGCCATCACCGCCGCAGGACAACACCAGGTTGCCGCCTGGTACGATACCGATCTTTAANGGCGGACATTCTTTACATCGAT] [+] EMBL AGA280532 [ TTTGCGAGCTGGCTGTCGACAAGGAGGTGGCCGAAATGATCGAGGCTGAGGGAGCTACTGCACCGCTTACCGAGTTGCTCAACTCGGCAAATGAAGGTGTCGCCACATACGCCGCAGCCGTACTGTTCAAGATGAGCGAGGACAAGTCGATGGATTACAAGAAGCGCTTCTCCAGCGAGCTGACCACCTTGCCCGTGTTTCGCGACGACAGCATGTGGAACAACGGCGAACTCGGTATTGGACCGGACCTGCAGGACATCCTGTCCCCCGAGCAGGCATACGAAGGTCTATACGGACAAGGGCCGGCGAGCGTACACAGCTCGCACGGTGGCCGTGCGTTCCAGCAAGGATACGACACCCTTCCAATAGACTCAATGCAAGGTCTGGA ] [-] EMBL AGA282233 [ GCCGTACTGTTCAAGATGAGCGAGGACAAGTCGATGGATTACAAGAAGCGCTTCTCCAGCGAGCTGACCACCTTGCCCGTGTTTCGCGACGACAGCATGTGGAACAACGGCGAACTCGGTATTGGACCGGACCTGCAGGACATCCTGTCCCCCGAGCAGGCATACGAAGGTCTATACGGACAAGGGCCGGCGAGCGTACACAGCTCGCACGGTGGCCGTGCGTTCCAGCAAGGATACGACACCCTTCCAATAGACTCAATGCAAGGTCTGGAGATTGGAGGAGGCGGTGGTAGCAGCAACGGTGGTGCGACTGGTAACGGCGGCATGGGCGGCCAGCAGCAGCAGTCTGGCGGTGGG CCCGGTTCGGTGGTGATGGGTGGCGGCGGTGCTAGCGGCATGTC ] consensusID : consensus_7492#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence [AGATCGCCNCGAGGTTNGACAGGCCGGCGAGCGTACACAGCTCGCACGGTGGCCGTGCGTTCCAGCAAGGATACGACACCCTTCCAATAGACTCAATGCAAGGTCTGGAGATTGGAGGAGGCGGTGGTAGCAGCAACGGTGGTGCGACTGGTAACGGCGGCATGGGCGGCCAGCAGCAGCAGTCTGGCGGTGGGCCCGGTTCGGTGGTGATGGGTGGCGGCGGTGCTAGCGGCATGTCCTCGTCCGGCCAGCCAACCTCACCGTACGGTATGGACATGGACGTCGGCGAAATGGAAGCTAGCGAGCTGACGTTTGATCATCTGGACGTGATGCCATCACCGCCGCAGGACAACAACCAGGTTGCCGCCTGGTACGATACCGATCTTTAAAGGGCGGACATTCTTTAGCATCGATCAACTTTAGCAGCG] [+] EMBL AL932595 [AGATCGCCNCGAGGTTNGACAGGCCGGCGAGCGTACACAGCTCGCACGGTGGCCGTGCGTTCCAGCAAGGATACGACACCCTTCCAATAGACTCAATGCAAGGTCTGGAGATTGGAGGAGGCGGTGGTAGCAGCAACGGTGGTGCGACTGGTAACGGCGGCATGGGCGGCCAGCAGCAGCAGTCTGGCGGTGGGCCCGGTTCGGTGGTGATGGGTGGCGGCGGTGCTAGCGGCATGTCCTCGTCCGGCCAGCCAACCTCACCGTACGGTATGGACATGGACGTCGGCGAAATGGAAGCTAGCGAGCTGACGTTTGATCATCTGGACGTGATGCCATCACCGCCGCAGGACAACAACCAGGTTGCCGCCTGGTACGATACCGATCTTTAAAGGGCGGACATTCTTTAGCATCGATCAACTTTAGCAGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7492#1 CCGCCCACGCGTCCGAGGGTACGGTCGGTGCACTTCACATTCTCGCCAAGGAGGAGTATA 60 consensus_7492#2 ------------------------------------------------------------ consensus_7492#0 CCGCCCACGCGTCCGACAAAACGAT-GAAGAGTTCCTTTTGTCTATTAAGCT--ACTATA 57 consensus_7492#1 ACCGACAGGTCATC-CGCTCGCA-GAACGTTATTCCGATCTTCGTCCAGTTGCTGTTCTA 118 consensus_7492#2 ------------------------------------------------------------ consensus_7492#0 TTTTATAGACAAAGACGTGTGTATGGATGTATGGTCATATTTCATCTTACGATTGATTAA 117 consensus_7492#1 CAACGACATCGAAAACATTCAGCGTGTGGCCGCTGGTGTACTTTGCGAGCTGGCTGTCGA 178 consensus_7492#2 ------------------------------------------------------------ consensus_7492#0 CAGCAGCCTGCATAATGTTTAGAGCA--GCAGCTAG-ACACAAAACGAAGAAGAAAT--- 171 consensus_7492#1 CAAGGAGGTGGCCGAAATGATCGAGGCTGAGGGAGCTACTGCACCGCTTACCGAGTT-GC 237 consensus_7492#2 ------------------------------------------------------------ consensus_7492#0 GAAGTAATTACTTAAGGTAATT-ACTATCAGAGATCAGAAATGTCGCTAGTAAGGTTTGA 230 consensus_7492#1 TCAACTCGGCAAATGAAGGTGTCGCCACATAC---GCCGCAGCCGTACTGTTCAAGATGA 294 consensus_7492#2 ------------------------------------------------------------ consensus_7492#0 ACAAAATGGCGCGTATACGCAATGTGCAATATTTGGTTCCGTTCATCCTGTTGTTTGTTT 290 consensus_7492#1 GCGAGGACAAGTC---GATGGATTACAAGAAGCGCTTCTC---CAGCGAGCTGA---CCA 345 consensus_7492#2 ------------------------------------------------------------ consensus_7492#0 GCTTGTTTTTTTTTTTGTTAAATCCACACCAACATTTTCCTTTCCGCGACCTCCATTCTA 350 consensus_7492#1 CCTTGCCCGTGTTTCGCGACGACAGCATGTGGAACAACG--------GCGAACTCGGTAT 397 consensus_7492#2 ------------------------------------------------------------ consensus_7492#0 CCTACCTTCCTTTTCACGACCATTGTCT-TCGAATAGTGTTTTTGTTGTGCGTTTGAAAA 409 consensus_7492#1 TGGACCGGACCTGCAGGACATCCTGTCCCCCGAGCA---------GGCATACGAAGGTCT 448 consensus_7492#2 ---------------------------------------------------AGATCGCCN 9 consensus_7492#0 AAGATCGA--CAGCGATACACACTGCCTGCAAAACATCGGATCGTGCTTTGGGATCGACA 467 ** * * consensus_7492#1 ATACGGACAA-GGGCCGGCGAGCGTA-------CACAGCTCGCACGGT---GGCCGTGCG 497 consensus_7492#2 CGAGGTTNGACAGGCCGGCGAGCGTA-------CACAGCTCGCACGGT---GGCCGTGCG 59 consensus_7492#0 GCATCGACAACGAACCACAAAGACCGACACTATCACAGCTCTTGTTCTTCAGTTTGTGAT 527 * * ** ** ******** * * *** consensus_7492#1 TTCCAGCAA------------GGATACGACACCCTTCCAATAGACTCAATGCAAGGTCTG 545 consensus_7492#2 TTCCAGCAA------------GGATACGACACCCTTCCAATAGACTCAATGCAAGGTCTG 107 consensus_7492#0 TACGATTAACATCTGCCCCTTGGATACGACACCCTTCCAATAGACTCAATGCAAGGTCTG 587 * * * ** *************************************** consensus_7492#1 GAGATTGGAGGAGGCGGTGGTAGCAGCAACGGTGGTGCGACTGGTAACGGCGGCATGGGC 605 consensus_7492#2 GAGATTGGAGGAGGCGGTGGTAGCAGCAACGGTGGTGCGACTGGTAACGGCGGCATGGGC 167 consensus_7492#0 GAGATTGGAGGAGGCGGTGGTAGCAGCAACGGTGGTGCGATTGGTAACGGCGGCATGGGC 647 **************************************** ******************* consensus_7492#1 GGCCAGCAGCAGCAGTCTGGCGGTGGGCCCGGTTCGGTGGTGATGGGTGGCGGCGGTGCT 665 consensus_7492#2 GGCCAGCAGCAGCAGTCTGGCGGTGGGCCCGGTTCGGTGGTGATGGGTGGCGGCGGTGCT 227 consensus_7492#0 GGCCAGCAGCAGCAGTCTGGCGGTGGGCCCGGTTCGGTGGTGATGGGTGGCGGCGGTGCT 707 ************************************************************ consensus_7492#1 AGCGGCATGTCCTCGTCCGGCCAGCCAACCTCACCGTACGGTATGGACATGGACGTCGGC 725 consensus_7492#2 AGCGGCATGTCCTCGTCCGGCCAGCCAACCTCACCGTACGGTATGGACATGGACGTCGGC 287 consensus_7492#0 AGCGGCATGTCCTCGTCCGGCCAGCCAACCTCACCGTACGGTATGGACATGGACGTCGGC 767 ************************************************************ consensus_7492#1 GAAATGGAAGCTAGCGAGCTGACGTTTGATCATCTGGACGTGATGCCATCACCGCCGCAG 785 consensus_7492#2 GAAATGGAAGCTAGCGAGCTGACGTTTGATCATCTGGACGTGATGCCATCACCGCCGCAG 347 consensus_7492#0 GAAATGGAAGCTAGCGAGCTGACGTTTGATCATCTGGACGTGATGCCATCACCGCCGCAG 827 ************************************************************ consensus_7492#1 GACAACA-CCAGGTTGCCGCCTGGTACGATACCGATCTTTAANGG-CGGACATTCTTTA- 842 consensus_7492#2 GACAACAACCAGGTTGCCGCCTGGTACGATACCGATCTTTAAAGGGCGGACATTCTTTAG 407 consensus_7492#0 GACAACAACCAGGTTGCCGCCTGGTACGATACCGATCTCTAAAGGGCGGACATACTTTAG 887 ******* ****************************** *** ** ******* ***** consensus_7492#1 CATCGAT----------------------------------------------------- 849 consensus_7492#2 CATCGATCAACTTTAGCAGCG--------------------------------------- 428 consensus_7492#0 CATCGATCAACTTTAGCAGCGGATGTCGCACACACACATCACAATGCAAACATGCAGGTA 947 ******* consensus_7492#1 ------------------------------------------------------------ consensus_7492#2 ------------------------------------------------------------ consensus_7492#0 GAATGTTCGAAAGAACGAAAGAACAGAGGAGGGCTAGGCGATCTGCGATCTAGGTGTAGG 1007 consensus_7492#1 ------------------------------------------------------------ consensus_7492#2 ------------------------------------------------------------ consensus_7492#0 GCGCGTCTCTGCAATAACACTTCCATTGCAAACTGGGCTATATTTGGATCATTTTATTTT 1067 consensus_7492#1 --------------------- consensus_7492#2 --------------------- consensus_7492#0 ACTAGTACTAACATTTTTCTT 1088 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||