These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7495#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1308 fasta sequence [TACGCGGCTTTTACAGATGCAACGACAGCCCGGATTACGCTGAATACGATCCGATTTGTGGTGTTGGTTTGTTTCCTGTTGCCATTTTTCTTCGCCAGTTATGCAACGGTTGCGCTCTCCCGTCAGCTGTGGCTGATTATCTTGTGCTGGCGCTATCCTTGGTTGAAGCGAACCAATGTACATGGGATCAAAAGCTTCGTCGATCGGACCCGCAATCCTGAGGTGCTGTGTGTGCTAATGGAGATGGAAGGTGAAATTGATGTTGTACAGCTGCGGGATGAATTTTTGCACCACATTCGCGATTGCAGCAGCAGCCATATGCGGCTATGCCTGCCGCAATTTATTTTACCCTTTATGTCTTGCTGGAACAAGTATCCGTGGCTGAAGGGAACCAGCAGTGCCGACGAACACATAGTATTGGCCCCAGCCATACAGCGAGGACGTCCAATAAAAGAACTGATGTGTTTGTTAAACATCGCTACCACAACTGCCGGCAGCGAAAGCTTGAAAGATCCGTTGATAACAAATGCTAAACCCGCTGCTCTTCACTGGCAAATCGTTTGCATTCCGGTAATTGGTGAATCGGCCCCGGACTGCAACGACCGTTGCGTCACCTCGCACTATCTGTTGTATGCGATCGATCTACAGCTTTTGAATGAGACAGAGAAACGCAACCTAAGCTACATCCCCTTTAACGGATACCTCGAACGAGGCGAACAACCAATGGTTGACAATGTACTGGCGAAACCTTACTACATTCCGCGCCTGTGGAACTATATTTTCTCGACCATACATTACCGCTGGAACGAGTTTGTCTACCAACACGATCCACTCGAATCGCCGGACATAGACCGCAAGCAGTACACAGGAATGGGTCAACTACTGTCTGCGCTGTTCATTTCCATCGTGTACGTTTGCGGAGACTTTGTGTGCTCTTTTCGGTCCATCAAAGGAAGTCCTTTGGATAAAATAGATTATCTTCAACGGTTGATTGAACG-CGAGATCGACAAGCGCAATCTTACGATACGAACGATTTGGGACACATTTCGGCAGTCCATCGAACCGGTCAATTTGGCGAAAGAGGTTACGTTTTTTATCTGGAAAACTATCGCCACGATCACGCTCATGGTCCCGTGGTACGGATGGAAGGAAACGGAAGCGTTGTTATTGTACCTTTCGAAAGGGACGATCAATAGTGATACGATGGTAGGATTCATCGTTGAATGCACTCCCATATGCTACGGCGTATTGCTCGAGTGTTGGCGCATGCTGTGGCTCCTGGTGGAGGTCACGCTACAACTCAATGAA] [+] EMBL CNS093GR [TACGCGGCTTTTACAGATGCAACGACAGCCCGGATTACGCTGAATACGATCCGATTTGTGGTGTTGGTTTGTTTCCTGTTGCCATTTTTCTTCGCCAGTTATGCAACGGTTGCGCTCTCCCGTCAGCTGTGGCTGATTATCTTGTGCTGGCGCTATCCTTGGTTGAAGCGAACCAATGTACATGGGATCAAAAGCTTCGTCGATCGGACCCGCAATCCTGAGGTGCTGTGTGTGCTAATGGAGATGGAAGGTGAAATTGATGTTGTACAGCTGCGGGATGAATTTTTGCACCACATTCGCGATTGCAGCAGCAGCCATATGCGGCTATGCCTGCCGCAATTTATTTTACCCTTTATGTCTTGCTGGAACAAGTATCCGTGGCTGAAGGGAACCAGCAGTGCCGACGAACACATAGTATTGGCCCCAGCCATACAGCGAGGACGTCCAATAAAAGAACTGATGTGTTTGTTAAACATCGCTACCACAACTGCCGGCAGCGAAAGCTTGAAAGATCCGTTGATAACAAATGCTAAACCCGCTGCTCTTCACTGGCAAATCGTTTGCATTCCGGTAATTGGTGAATCGGCCCCGGACTGCAACGACCGTTGCGTCACCTCGCACTATCTGTTGTATGCGATCGATCTACAGCTTTTGAATGAGACAGAGAAACGCAACCTAAGCTACATCCCCTTTAACGGATACCTCGAACGAGGCGAACAACCAATGGTTGACAATGTACTGGCGAAACCTTACTACATTCCGCGCCTGTGGAACTATATTTTCTCGA ] [+] EMBL BX622342 [ AGATCCGTTGATAACAAATGCTAAACCCGCTGCTCTTCACTGGCAAATCGTTTGCATTCCGGTAATTGGTGAATCGGCCCCGGACTGCAACGACCGTTGCGTCACCTCGCACTATCTGTTGTATGCGATCGATCTACAGCTTTTGAATGAGACAGAGAAACGCAACCTAAGCTACATCCCCTTTAACGGATACCTCGAACGAGGCGAACAACCAATGGTTGACAATGTACTGGCGAAACCTTACTACATTCCGCGCCTGTGGAACTATATTTTCTCGACCATACATTACCGCTGGAACGAGTTTGTCTACCAACACGATCCACTCGAATCGCCGGACATAGACCGCAAGCAGTACACAGGAATGGGTCAACTACTGTCTGCGCTGTTCATTTCCATCGTGTACGTTTGCGGAGACTTTGTGTGCTCTTTTCGGTCCATCAAAGGAAGTCCTTTGGATAAAATAGATTATCTTCAACGGTTGATTGAACG CGAGATCGACAAGCGCAATCTTACGATACGAACGATTTGGGACACATTTCGGCAGTCCATCGAACCGGTCAATTTGGCGAAAGAGGTTACGTTTTTTATCTGGAAAACTATCGCCACGATCACGCTCATGGTCCCGTGGTACGGATGGAAGGAAACGGAAGCGTTGTTATTGTACCTTTCGAAAGGGACGATCAATAGTGATACGATGGTAGGATTCATCGTTGAATGCACTCCCATATGCTACGGCGTATTGCTCGAGTGTTGGCGCATGCTGTGGCTCCTGGTGGAGGTCACGCTACAACTCAATGAA] [+] EMBL BX626434 [ CCGGACTGCAACGACCGTTGCGTCACCTCGCACTATCTGTTGTATGCGATCGATCTACAGCTTTTGAATGAGACAGAGAAACGCAACCTAAGCTACATCCCCTTTAACGGATACCTCGAACGAGGCGAACAACCAATGGTTGACAATGTACTGGCGAAACCTTACTACATTCCGCGCCTGTGGAACTATATTTTCTCGACCATACATTACCGCTGGAACGAGTTTGTCTACCAACACGATCCACTCNAATCGCCGGACATAGACCGCAAGCAGTACACAGGAATGGGTCAACTACTGTCTGCGCTGTTCATTTCCATCGTGTACGTTTGCGGAGACTTTGTGTGCTCTTTTCGGTCCATCAAAGGAAGTCCTTTGGATAAAATAGATTATCTTCAACGGTTGATTGAACGCCGAGATCGACAAGCGCAATCTTACGATACGAACGATTTGGGACACATTTCGGCAGTCCATCGAACCGGTNAATTT ] [-] EMBL CNS09QGN [ GATTTGGGACACATTTCGGCAGTCCATCGAACCGGTCAATTTGGCGAAAGAGGTTACGTTTTTTTTCTGGAAAACTATCGCCACGATCACGCTCATGGTCCCGTGGTACGGATGGAAGGAAACGGAAGCGTTGTTATTGTACCTTTCGAAAGGGACGATCAATAGTGATACGATGGTAGGATTCATCGTTGAATGCACTCCCATATGCTACGGCGTATTGCTCGAGTGTTGGCGC ] consensusID : consensus_7495#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 707 fasta sequence [CCGCGTACGATGAGCAACCAGATTGTAGCAAGCATCTGCTTCGTGTGCTGATCGTTCGAGGGACACACCTTCAGCCACCGATTTACACCATGTGGACAGATGCAACGACAGCCCGGATTACGCTGAATACGATCCGATTTGTGGTGTTGGTCTGTTTCCTGTTGCCATTTTTCTTCGCCAGTTATGCAACGGTTGCGCTCTCCCGTCAGCTGTGGCTGATTATCTTGTGCTGGCGCTATCCTTGGTTGAAGCGAACCAATGTACATGGGATCAAAAGCTTCGTCGATCGGACCCGCAATCCTGAGGTGCTGTGTGTGCTAATGGAGATGGAAGGTGAAATTGATGTTGTACAGCTGCGGGATGAATTTTTACACCACATTCGCGATTGCAGCAGCAGCCATATGC-GGCTATGCCTGCCGCAATTTATTTTACCCTTTATGTCTTGCTGGAACAAGTATCCGTGGCTGAAGGGAACCAGCAGTGCCGACGAACACATAGTATTGGCCCCAGCCATACAGCGAGGACGTCCAATAAAAGAACTGATGTGTTTGTTAAACATCGCTACCACAACTGCCGGCAGCGCAAGCTT-GAAAGATCCG-TTGATAACAAATGCTAAACCCGCTGCTCTTCACTGGCAAATCGTTTGCATTCCGGTAATTGGTGAATCGGCCCCGGACTGCAACGACCGTTGCGTCACCTCGCACTAT] [+] EMBL BM593330 [CCGCGTACGATGAGCAACCAGATTGTAGCAAGCATCTGCTTCGTGTGCTGATCGTTCGAGGGACACACCTTCAGCCACCGATTTACACCATGTGGACAGATGCAACGACAGCCCGGATTACGCTGAATACGATCCGATTTGTGGTGTTGGTCTGTTTCCTGTTGCCATTTTTCTTCGCCAGTTATGCAACGGTTGCGCTCTCCCGTCAGCTGTGGCTGATTATCTTGTGCTGGCGCTATCCTTGGTTGAAGCGAACCAATGTACATGGGATCAAAAGCTTCGTCGATCGGACCCGCAATCCTGAGGTGCTGTGTGTGCTAATGGAGATGGAAGGTGAAATTGATGTTGTACAGCTGCGGGATGAATTTTTACACCACATTCGCGATTGCAGCAGCAGCCATATGC GGCTATGCCTGCCGCAATTTATTTTACCCTTTATGTCTTGCTGGAACAAGTATCCGTGGCTGAAGGGAACCAGCAGTGCCGACGAACACATAGTATTGGCCCCAGCCATACAGCGAGGACGTCCAATAAAAGAACTGATGTGTTTGTTAAACATCGCTACCACAACTGCCGGCAGCGCAAGCTT GAAAGATCCG TTGATAACAAATGCTAAACCCGCTGCTCTTCACTGGCAAATCGTTTGCATTCCGG ] [+] EMBL CNS09QGM [ ATCTGCTTCGTGTGCTGATCGTTCGAGGGACACACCTTCAGCCAACGATTTACACCATGTGGACAGATGCAACGACAGCCCGGATTACGCTGAATACGATCCGATTTGTGGTGTTGGTTTGTTTCCTGTTGCCATTTTTCTTCGCCAGTTATGCAACGGTTGCGCTCTCCCGTCAGCTGTGGCTGATTATCTTGTGCTGGCGCTATCCTTGGTTGAAGCGAACCAATGTACATGGGATCAAAAGCTTCGTCGATCGGACCCGCAATCCTGAGGTGCTGTGTGTGCTAATGGAGATGGAAGGTGAAATTGATGTTGTACAGCTGCGGGATGAATTTTTGCACCACATTCGCGATTGCAGCAGCAGCCATATGCGGGCTATGCCTGCCGCAATTTATTTTACCCTTTATGTCTTGCTGGAACAAGTATCCGTGGCTGAAGGGAACCAGCAGTGCCGACGAACACATAGTATTGGCCCCAGCCATACAGCGAGGACGTCCAATAAAAGAACTGATGTGTTTGTTAAACATCGCTACCACAACTGCCGGCAGCGAAAGCTTGGAAAGATCCGTTTGATAACAAATGCTAAACCCGCTGCTCTTCACTGGCAAATC ] [+] EMBL BX602046 [ TGTGCTGATCGTTCGAGGGACACACCTTCAGCCACCGATTTACACCATGTGGACAGATGCAACGACAGCCCGGATTACGCTGAACACGATCCGATTTGTGGTGTTGGTCTGTTTCCTGTTGCCATTTTTCTTCGCCAGTTATGCAACGGTTGCGCTCTCCCGTCAGCTGTGGCTGATTATCTTGTGCTGGCGCTATCCTTGGTTGAAGCGAACCAATGTACATGGGATCAAAAGCTTCGTCGATCGGACCCGCAATCCTGAGGTGCTGTGTGTGCTAATGGAGATGGAAGGTGAAATTGATGTTGTACAGCTGCGGGATGAATTTTTACACCACATTCGCGATTGCAGCAGCAGCCATATGC GGCTATGCCTGCCGCAATTTATTTTACCCTTTATGTCTTGCTGGAACAAGTATCCGTGGCTGAAGGGAACCAGCAGTGCCGACGAACACATAGTATTGGCCCCAGCCATACAGCGAGGACGTCCAATAAAAGAACTGATGTGTTTGTTAAACATCGCTACCACAACTGCCGGCAGCGCAAGCTT GAAAGATCCG TTGATAACAAATGCTAAACCCGCTGCTCTTCACTGGCAAATCGTTTGCATTCCGGTAATTGGTGAATCGGCCCCGGACTGCAACGACCGTTGCGTCACCTCGCACTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7495#0 ------------------------------------------------------------ consensus_7495#1 CCGCGTACGATGAGCAACCAGATTGTAGCAAGCATCTGCTTCGTGTGCTGATCGTTCGAG 60 consensus_7495#0 -----------------------TACGCGGCTTTTACAGATGCAACGACAGCCCGGATTA 37 consensus_7495#1 GGACACACCTTCAGCCACCGATTTACACCATGTGGACAGATGCAACGACAGCCCGGATTA 120 *** * * ************************* consensus_7495#0 CGCTGAATACGATCCGATTTGTGGTGTTGGTTTGTTTCCTGTTGCCATTTTTCTTCGCCA 97 consensus_7495#1 CGCTGAATACGATCCGATTTGTGGTGTTGGTCTGTTTCCTGTTGCCATTTTTCTTCGCCA 180 ******************************* **************************** consensus_7495#0 GTTATGCAACGGTTGCGCTCTCCCGTCAGCTGTGGCTGATTATCTTGTGCTGGCGCTATC 157 consensus_7495#1 GTTATGCAACGGTTGCGCTCTCCCGTCAGCTGTGGCTGATTATCTTGTGCTGGCGCTATC 240 ************************************************************ consensus_7495#0 CTTGGTTGAAGCGAACCAATGTACATGGGATCAAAAGCTTCGTCGATCGGACCCGCAATC 217 consensus_7495#1 CTTGGTTGAAGCGAACCAATGTACATGGGATCAAAAGCTTCGTCGATCGGACCCGCAATC 300 ************************************************************ consensus_7495#0 CTGAGGTGCTGTGTGTGCTAATGGAGATGGAAGGTGAAATTGATGTTGTACAGCTGCGGG 277 consensus_7495#1 CTGAGGTGCTGTGTGTGCTAATGGAGATGGAAGGTGAAATTGATGTTGTACAGCTGCGGG 360 ************************************************************ consensus_7495#0 ATGAATTTTTGCACCACATTCGCGATTGCAGCAGCAGCCATATGCGGCTATGCCTGCCGC 337 consensus_7495#1 ATGAATTTTTACACCACATTCGCGATTGCAGCAGCAGCCATATGCGGCTATGCCTGCCGC 420 ********** ************************************************* consensus_7495#0 AATTTATTTTACCCTTTATGTCTTGCTGGAACAAGTATCCGTGGCTGAAGGGAACCAGCA 397 consensus_7495#1 AATTTATTTTACCCTTTATGTCTTGCTGGAACAAGTATCCGTGGCTGAAGGGAACCAGCA 480 ************************************************************ consensus_7495#0 GTGCCGACGAACACATAGTATTGGCCCCAGCCATACAGCGAGGACGTCCAATAAAAGAAC 457 consensus_7495#1 GTGCCGACGAACACATAGTATTGGCCCCAGCCATACAGCGAGGACGTCCAATAAAAGAAC 540 ************************************************************ consensus_7495#0 TGATGTGTTTGTTAAACATCGCTACCACAACTGCCGGCAGCGAAAGCTTGAAAGATCCGT 517 consensus_7495#1 TGATGTGTTTGTTAAACATCGCTACCACAACTGCCGGCAGCGCAAGCTTGAAAGATCCGT 600 ****************************************** ***************** consensus_7495#0 TGATAACAAATGCTAAACCCGCTGCTCTTCACTGGCAAATCGTTTGCATTCCGGTAATTG 577 consensus_7495#1 TGATAACAAATGCTAAACCCGCTGCTCTTCACTGGCAAATCGTTTGCATTCCGGTAATTG 660 ************************************************************ consensus_7495#0 GTGAATCGGCCCCGGACTGCAACGACCGTTGCGTCACCTCGCACTATCTGTTGTATGCGA 637 consensus_7495#1 GTGAATCGGCCCCGGACTGCAACGACCGTTGCGTCACCTCGCACTAT------------- 707 *********************************************** consensus_7495#0 TCGATCTACAGCTTTTGAATGAGACAGAGAAACGCAACCTAAGCTACATCCCCTTTAACG 697 consensus_7495#1 ------------------------------------------------------------ consensus_7495#0 GATACCTCGAACGAGGCGAACAACCAATGGTTGACAATGTACTGGCGAAACCTTACTACA 757 consensus_7495#1 ------------------------------------------------------------ consensus_7495#0 TTCCGCGCCTGTGGAACTATATTTTCTCGACCATACATTACCGCTGGAACGAGTTTGTCT 817 consensus_7495#1 ------------------------------------------------------------ consensus_7495#0 ACCAACACGATCCACTCGAATCGCCGGACATAGACCGCAAGCAGTACACAGGAATGGGTC 877 consensus_7495#1 ------------------------------------------------------------ consensus_7495#0 AACTACTGTCTGCGCTGTTCATTTCCATCGTGTACGTTTGCGGAGACTTTGTGTGCTCTT 937 consensus_7495#1 ------------------------------------------------------------ consensus_7495#0 TTCGGTCCATCAAAGGAAGTCCTTTGGATAAAATAGATTATCTTCAACGGTTGATTGAAC 997 consensus_7495#1 ------------------------------------------------------------ consensus_7495#0 GCGAGATCGACAAGCGCAATCTTACGATACGAACGATTTGGGACACATTTCGGCAGTCCA 1057 consensus_7495#1 ------------------------------------------------------------ consensus_7495#0 TCGAACCGGTCAATTTGGCGAAAGAGGTTACGTTTTTTATCTGGAAAACTATCGCCACGA 1117 consensus_7495#1 ------------------------------------------------------------ consensus_7495#0 TCACGCTCATGGTCCCGTGGTACGGATGGAAGGAAACGGAAGCGTTGTTATTGTACCTTT 1177 consensus_7495#1 ------------------------------------------------------------ consensus_7495#0 CGAAAGGGACGATCAATAGTGATACGATGGTAGGATTCATCGTTGAATGCACTCCCATAT 1237 consensus_7495#1 ------------------------------------------------------------ consensus_7495#0 GCTACGGCGTATTGCTCGAGTGTTGGCGCATGCTGTGGCTCCTGGTGGAGGTCACGCTAC 1297 consensus_7495#1 ------------------------------------------------------------ consensus_7495#0 AACTCAATGAA 1308 consensus_7495#1 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||