These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7501#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1280 fasta sequence [GAGGCAAGAATCGGCACGATGGAGTCACTGTGTCCGTATGTGTGTGTGTGTGTGTCTCTGGTTTGTATCTCAACTAGAAGTGTATTAAGTTTTTCTCCTTGCAGTAGAAGAACATTGCGTTGCTCGAGCAGCCAATTGAATACAAGCATTTAAATAATATAGAGCAG-CCTAGGAAGAACGAGGGAAGTTTAGGTAAGCACAAGACGACCACTGCATGGAAATGGATGCCAAAAACAAATGAAGAATT-GAATT-TGAATGGATCGTACAAGGAAGGGCAGAAGCGGATAGGAA-ACACGA-AATATAGTTAAATGAGAAA-AGAATTGGCGAATTTGAGATTGAAAAAAACGAAGAAATGCGTAGCGAGGACTAGAAAGGTTAGTTTCGGTT-TTCCATTATTACTACGCGATATTT-GTCAGTAGCAACTGTAGCT-AAATGTGAACTTTAT-TACGTGTTGCAACCAACAACGTTCGTGCAACGCATGT-TT-TAA-AAAG-GT-TCATCGTGTGTACATTTCGATTGACATTTTTAAAAACAAAACAATTCGAGTCATCTCCTACAGCTTTTA-AAAAGGCT-AATTTGAGTCTCAGTTTGCATAATACACACTGCATACATATCTGTATAAACATAACTGTTTCTTCAAAACGGCAAAATGCTCGGTAATCACAGCTCAATTAAGCGAAGCCGTTACAAACGATGATCGATGATCGGTATGATGTATTTTCGAAGATTAATTAATTATTGCGTTGGAAAATGGGTTGAAATTAGTAAGCTCTACGTAAAACGAATGAAAAGAGAATTGTTCATAATTGAACAGCGGGAAAGAGAAAATAAGAGACATGGAGTAATGGACTACCGGAGGAGTAATCAAATGATCTTTTGACGGATTAGAATAGACTGTGGAAGGTC-ACC-AAAAGGTAAAGTGATATCAAAT-ACACTTAGATAGCGAAATCAAGCCTGAAAGGGAGAGAGTGAGGTAGAGAGAAAAGAAAAAGTAGTGAGAGTAAGAAAATGTTTCGATGTAATACTCCAGCACGGATGACATTATTCAATCTACCATGATTAACATTCTCCCTGGGCTGTTTGTTCTTCAACACCTATCTGTGCGCTAGTTTGCAGCAAGTTAAGGTGTGGTGATTAGCAAATAGAGTAGAGAGAGCATTTGGGAAAGCATTGGAGAGAAGGAAAACCCCCCCTGTAACCATGGTTGGTGCGCGTGCGGTGTGGTGATGCACGCTCATCGTAAAGACATGTAGAATTTGTGTTACTATTTTCACGTCCTGAAG] [+] EMBL BX469860 [GAGGCAAGAATCGGCACGATGGAGTCACTGTGTCCGTATGTGTGTGTGTGTGTGTCTCTGGTTTGTATCTCAACTAGAAGTGTATTAAGTTTTTCTCCTTGCAGTAGAAGAACATTGCGTTGCTCGAGCAGCCAATTGAATACAAGCATTTAAATAATATAGAGCAG CCTAGGAAGAACGAGGGAAGTTTAGGTAAGCACAAGACGACCACTGCATGGAAATGGATGCCAAAAACAAATGAAGAATT GAATT TGAATGGATCGTACAAGGAAGGGCAGAAGCGGATAGGAA ACACGA AATATAGTTAAATGAGAAA AGAATTGGCGAATTTGAGATTGAAAAAAACGAAGAAATGCGTAGCGAGGACTAGAAAGGTTAGTTTCGGTT TTCCATTATTACTACGCGATATTT GTCAGTAGCAACTGTAGCT AAATGTGAACTTTAT TACGTGTTGCAACCAACAACGTTCGTGCAACGCATGT TT TAA AAAG GT TCATCGTGTGTACATTTCGATTGACATTTTTAAAAACAAAACAATTCGAGTCATCTCCTACAGCTTTTANAAAGGGCTAAATTTGAGTCTCAGTTTGCATAATACACACTGCATACNTATCTGTAT ] [+] EMBL BX619401 [ gcatnnaAAATAATATAGAGCAGACCTAGGAAGAACGAGGGAAGTTTAGGTAAGCACAAGACGACCACTGCATGGAAATGGATGCCAAAAACAAATGAAGAATTNGAATTCTGAATGGATCGTACAAGGAAGGGCAGAAGCGGATAGGAAGACACGATAATATAGTTAAATGAGAAATAGAATTGGCGAATTTGAGATTGAAAAAAACGAAGAAATGCGTAGCGAGGACTAAAAAGGTTAGTTTCGGTTNNTCCATTATTACTACGCGATATTTNGTCAGTAGCAACTGTAGCTAAAATGTGAACTCTATATACGTGTGGCAACCAACAACGTACGTGCAACGCATGTGTT TAANAAAGCGTNTCATCG ] [+] EMBL BX621240 [ TATAGAGCAG CCTAGGAAGAACGAGGGAAGTTTAGGTAAGCACAAGACGACCACTGCATGGAAATGGATGCCAAAAACAAATGAAGAATT GAATT TGAATGGATCGTACAAGGAAGGGCAGAAGCGGATAGGAA ACACGA AATATAGTTAAATGAGAAA AGAATTGGCGAATTTGAGATTGAAAAAAACGAAGAAATGCGTAGCGAGGACTAGAAAGGTTAGTTTCGGTT TTCCATTATTACTACGCGATATTT GTCAGTAGCAACTGTAGCT AAATGTGAACTTTAT TACGTGTTGCAACCAACAACGTTCGTGCAACGCATGT TT TAA AAAG GT TCATCGTGTGTACATTTCGATTGACATTTTTAAAAACAAAACAATTCGAGTCATCTCCTACAGCTTTTA AAAAGGCT AATTTGAGTCTCAGTTTGCATAATACACACTGCATACATATCTGTATAAACATAACTGTTTCTTCAAAACGGCAAAATGCTCGGTAATCACAGCTCAATTAAGCGAAGCCGTTACAAACGATGATCGATGATCGGTATGATGTATTTTCGAAGATTAATTAATTATTGCGTTGGAAAATGGGTTGAAATTAGTAAGCTCTACGTAAAACGAATGAAAAGAGAATTGTTCATAATTGAACAGCGGGAAAGAGAAAATAAGAGACATGGAGTAATGGACTACCGGAGGAGTAATCAAATGATCTTTTGACGGATTAGAATA ] [+] EMBL BX617756 [ GAGGGAAGTTTAGGTAAGCACAAGACGACCACTGCATGGAAATGGATGCCAAAAACAAATGAAGAATT GAATT TGAATGGATCGTACAAGGAAGGGCAGAAGCGGATAGGAA ACACGA AATATAGTTAAATGAGAAA AGAATTGGTGAATTTGAGATTG AAAAATCGAAGCAAT GTAGCGAAGACAAGAAAGGTTAGTTTCGGTT TTCCATTATTACTACGCGATATTT GTCAGTAGCAACTGTAGCT AAATGTGAACTTTAT TACGTGTTGCAACCAACAACGTTCGTGCAACGCATGT TT TAA AAAG GT TCATCGTGTGTACATTTCGATTGACATTTTTAAAAACAAAACAATTCGAGTCATCTCCTACAGCTTTTA AAAAGGCT AATTTGAGTCTCAGTTTGCATAATACACACTGCATACATATCTGTATAAACAAAAATGTTTCTTCATGACGGCAAAATGCTCGGTAATCACAGCTCAATTAAGCGAAGCCGTTACAAACGATGATCGATGATCGGTTTGATGTATTTTCGAAGATTAATTAATTATTGCGTTGGAAAATGGGTTGAAATTAGTAAGCTCTACGTAAAACGAATGAAAAGAGAATTGTTCATAATTGAACAGCGGGAAAGAGAAAATAAGAGACATGGAGTAATGGACTACCGGAGGAGTATTC AATGATCTTTTGACGGATTAGAATAGACTGTGGAAGGTC ACC AAAAGGTAAAGTGATATCAAAT ACACTTAGATAGCGAAATCAAGCCTGAAAGGGAGAGAGTGAGG ] [+] EMBL BX626521 [ TGT TTCCNA AAAG GT TCATCGTGTGTACATTTCGATTGACATTTTTAAAAACAAAACAATTCGAGTCATCTCCTACAGCTTTTA AAAAGGCT AATTTGAGTCTCAGTTTGCATAATACACACTGCATACATATCTGTATAAACATAACTGTTTCTTCAAAACGGCAAAATGCTCGGTAATCACAGCTCAATTAAGCGAAGCCGTTACAAACGATGATCGATGATCGGTATGATGTATTTTCGAAGATTAATTAATTATTGCGTTGGAAAATGGGTTGAAATTAGTAAGCTCTACGTAAAACGAATGAAAAGAGAATTGTTCATAATTGAACAGCGGGAAAGAGAAAATAAGAGACATGGAGTAATGGACTACCGGAGGAGTAATCAAATGATCTTTTGACGGATTAGAATAGA ] [+] EMBL BX617195 [ CGTAAAACGAATGAAAAGAGAATTGTTCATAATTGAACAGCGGGAAAGAGAAAATAAGAGACATGGAGTAATGGACTACCGGAGGAGTATTCAAATGATCTTTTGACGGATTAGAATAGACTGTGGAAGGTCAACCAAAAAGGTAAAGTGATATCAAATCACACTTAGATAGCGAAATCAGGCGTGAGAGGGAGAGAGTGAGGTAGAGAGAAAAGAAAAAGTAGTGAGAGTAAGAAAATGTTTCGATGTAATACTCCAGCACGGATGACATTATTCAATCTACCATGATTAACATTCTCCCTGGGCTGTTTGTTCTTCAACACCTATCTGTGCGCTAGTTTGCAGCAAGTTAAGGTGTGGTGATTAGCAAATAGAGTAGAGAGAGCATTTGGGAAAGCATTGGAGAGAAGGAAAACCCCCCCTGTAACCATGGTTGGTGCGCGTGCGGTGTGGTGATGCACGCTCATCGTAAAGACATGTAGAATTTGTGTTACTATTTTCACGTCCTGAAG] consensusID : consensus_7501#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 252 fasta sequence [TCTCGATGTATTTTCAAAGATTAATTAATTTTTGCATTGGAAAATGGGTTGAAATTAGTAAGCTCGGCGAAAACGAGTGAAAAGAGAATTATTCATAATTGAAAAGCGGGAAAGAGAAAATAAGATACATGGAGTAATGGACTACGGGAGAAGTAATCAAATGATCTTTTGACGGATTAGAATAGACTGTGGAAGGTCAAACAAAAAGGTAAAGTGATATCAAATCACACTTAGATAGTGCAATCGGGCGTG] [+] EMBL BM620480 [TCTCGATGTATTTTCAAAGATTAATTAATTTTTGCATTGGAAAATGGGTTGAAATTAGTAAGCTCGGCGAAAACGAGTGAAAAGAGAATTATTCATAATTGAAAAGCGGGAAAGAGAAAATAAGATACATGGAGTAATGGACTACGGGAGAAGTAATCAAATGATCTTTTGACGGATTAGAATAGACTGTGGAAGGTCAAACAAAAAGGTAAAGTGATATCAAATCACACTTAGATAGTGCAATCGGGCGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7501#0 GAGGCAAGAATCGGCACGATGGAGTCACTGTGTCCGTATGTGTGTGTGTGTGTGTCTCTG 60 consensus_7501#1 ------------------------------------------------------------ consensus_7501#0 GTTTGTATCTCAACTAGAAGTGTATTAAGTTTTTCTCCTTGCAGTAGAAGAACATTGCGT 120 consensus_7501#1 ------------------------------------------------------------ consensus_7501#0 TGCTCGAGCAGCCAATTGAATACAAGCATTTAAATAATATAGAGCAGCCTAGGAAGAACG 180 consensus_7501#1 ------------------------------------------------------------ consensus_7501#0 AGGGAAGTTTAGGTAAGCACAAGACGACCACTGCATGGAAATGGATGCCAAAAACAAATG 240 consensus_7501#1 ------------------------------------------------------------ consensus_7501#0 AAGAATTGAATTTGAATGGATCGTACAAGGAAGGGCAGAAGCGGATAGGAAACACGAAAT 300 consensus_7501#1 ------------------------------------------------------------ consensus_7501#0 ATAGTTAAATGAGAAAAGAATTGGCGAATTTGAGATTGAAAAAAACGAAGAAATGCGTAG 360 consensus_7501#1 ------------------------------------------------------------ consensus_7501#0 CGAGGACTAGAAAGGTTAGTTTCGGTTTTCCATTATTACTACGCGATATTTGTCAGTAGC 420 consensus_7501#1 ------------------------------------------------------------ consensus_7501#0 AACTGTAGCTAAATGTGAACTTTATTACGTGTTGCAACCAACAACGTTCGTGCAACGCAT 480 consensus_7501#1 ------------------------------------------------------------ consensus_7501#0 GTTTTAAAAAGGTTCATCGTGTGTACATTTCGATTGACATTTTTAAAAACAAAACAATTC 540 consensus_7501#1 ------------------------------------------------------------ consensus_7501#0 GAGTCATCTCCTACAGCTTTTAAAAAGGCTAATTTGAGTCTCAGTTTGCATAATACACAC 600 consensus_7501#1 ------------------------------------------------------------ consensus_7501#0 TGCATACATATCTGTATAAACATAACTGTTTCTTCAAAACGGCAAAATGCTCGGTAATCA 660 consensus_7501#1 ------------------------------------------------------------ consensus_7501#0 CAGCTCAATTAAGCGAAGCCGTTACAAACGATGATCGATGATCGGTATGATGTATTTTCG 720 consensus_7501#1 --------------------------------------------TCTCGATGTATTTTCA 16 *********** consensus_7501#0 AAGATTAATTAATTATTGCGTTGGAAAATGGGTTGAAATTAGTAAGCTCTACGTAAAACG 780 consensus_7501#1 AAGATTAATTAATTTTTGCATTGGAAAATGGGTTGAAATTAGTAAGCTCGGCG-AAAACG 75 ************** **** ***************************** ** ****** consensus_7501#0 AATGAAAAGAGAATTGTTCATAATTGAACAGCGGGAAAGAGAAAATAAGAGACATGGAGT 840 consensus_7501#1 AGTGAAAAGAGAATTATTCATAATTGAAAAGCGGGAAAGAGAAAATAAGATACATGGAGT 135 * ************* ************ ********************* ********* consensus_7501#0 AATGGACTACCGGAGGAGTAATCAAATGATCTTTTGACGGATTAGAATAGACTGTGGAAG 900 consensus_7501#1 AATGGACTACGGGAGAAGTAATCAAATGATCTTTTGACGGATTAGAATAGACTGTGGAAG 195 ********** **** ******************************************** consensus_7501#0 GTCA--CCAAAAGGTAAAGTGATATCAAAT-ACACTTAGATAGCGAAATCAAGCCTGAAA 957 consensus_7501#1 GTCAAACAAAAAGGTAAAGTGATATCAAATCACACTTAGATAGTGCAATCGGGCGTG--- 252 **** * ********************** ************ * **** ** ** consensus_7501#0 GGGAGAGAGTGAGGTAGAGAGAAAAGAAAAAGTAGTGAGAGTAAGAAAATGTTTCGATGT 1017 consensus_7501#1 ------------------------------------------------------------ consensus_7501#0 AATACTCCAGCACGGATGACATTATTCAATCTACCATGATTAACATTCTCCCTGGGCTGT 1077 consensus_7501#1 ------------------------------------------------------------ consensus_7501#0 TTGTTCTTCAACACCTATCTGTGCGCTAGTTTGCAGCAAGTTAAGGTGTGGTGATTAGCA 1137 consensus_7501#1 ------------------------------------------------------------ consensus_7501#0 AATAGAGTAGAGAGAGCATTTGGGAAAGCATTGGAGAGAAGGAAAACCCCCCCTGTAACC 1197 consensus_7501#1 ------------------------------------------------------------ consensus_7501#0 ATGGTTGGTGCGCGTGCGGTGTGGTGATGCACGCTCATCGTAAAGACATGTAGAATTTGT 1257 consensus_7501#1 ------------------------------------------------------------ consensus_7501#0 GTTACTATTTTCACGTCCTGAAG 1280 consensus_7501#1 ----------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||