These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7503#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 966 fasta sequence [TTTACAAAACAAAAGTGCGGCAGGCTAAAACTCATCTCAATCTCCAGCAAAAATGCCTCTCATCGTAATCACCGGCCTGCCGCGCAGTGGGAAAACAAGCCGCGCCAAAGAGCTGGAAAAATACTTTACCGAGCTGGGTAAAGGGCCGGTGCACATCGTGTCCGAAGCGGACTGCATCGCTCGGTCCGGGTGCGGCGTGAAGGAGAGCTTCACCGACACGGGAAAGGAAAAGCAAATCCGTGCCAGCCTGAAATCGGAAGCGATGAAGCTGCTCACCAAGTCGACGCTGGTCATCATGGACGGAACGAATTACATTAAGGGCTATCGGTACGAAATCTTCTGCATGAGCAAAAACGCCCGTACGACCCAGTGCACGGTACACTGTGCCATGACGGTTGAGCAGCGAAATGCTCGCAGGGAGGAGATTGTATAGAGTTCCTCGAGCGGGGAACTTGATGCGGAAACGTTCGATGCTCTTTGCCAGCGGTACGAGGAACCGCA-GACACGAGCCGCTGGGATCGACCCCTGTTTACCGTGTACGGTGGAGAGGAGATGGAGCTGGCGCGCATCCACAGCGCACTGTACGAACAGGCCCCGCTGCCTCCGAATTTGGCCACGCAAAATATGCCACTGAGTGCGACCAATTTTCTGTTCGAGCTGGACAAAAGTACGCAGACGATCATCGATCAGATAGCGGCGGCAAGGAAAATTGGCCTGGACGGTCCGGTAGAGATACCGCAGGCGGGCATGCGTGCGGAAGTCCCGGCGAACATGAGCGTGGCGCAGCTTAACCGGCATCGACGACAGTTTTTGAACTACGTGAAAATGCACACGAACGTTAGCTCGGATATTAGCAAAATACCGGCCATCTTTGTACAGTTTCTCAACACAAATACAAATGGCGCTTAACGATGAGCGTTTGTTGAAACAACTTAAAAAAAAAAAAAAAAAGGCCACATGTGCCCG] [+] EMBL CNS092ZO [TTTACAAAACAAAAGTGCGGCAGGCTAAAACTCATCTCAATCTCCAGCAAAAATGCCTCTCATCGTAATCACCGGCCTGCCGCGCAGTGGGAAAACAAGCCGCGCCAAAGAGCTGGAAAAATACTTTACCGAGCTGGGTAAAGGGCCGGTGCACATCGTGTCCGAAGCGGACTGCATCGCTCGGTCCGGGTGCGGCGTGAAGGAGAGCTTCACCGACACGGGAAAGGAAAAGCAAATCCGTGCCAGCCTGAAATCGGAAGCGATGAAGCTGCTCACCAAGTCGACGCTGGTCATCATGGACGGAACGAATTACATTAAGGGCTATCGGTACGAAATCTTCTGCATGAGCAAAAACGCCCGTACGACCCAGTGCACGGTACACTGTGCCATGACGGTTGAGCAGCGAAATGCTCGCAGGGAGGAGATTGTATAGAGTTCCTCGAGCGGGGAACTTGATGCGGAAACGTTCGATGCTCTTTGCCAGCGGTACGAGGAACCGCA GACACGAGCCGCTGGGATCGACCCCTGTTTACCGTGTACGGTGGAGAGGAGATGGAGCTGGCGCGCATCCACAGCGCACTGTACGAACAGGCCCCGCTGCCTCCGAATTTGGCCACGCAAAATATGCCACTGAGTGCGACCAATTTTCTGTTCGAGCTGGACAAAAGTACGCAGACGATCATCGATCAGATAGCGGCGGCAAGGAAAATTGGCCTGGACGGTCCGGTAGAGATACCGCAGCGGGGCATGCGTGCGGAAGTCCCGGCGAACATGAGCGTGGCGCACTTTAACCGGCATCGACGACAGTTTTTGAACTACGTGAAAATGCACACGAACGTTAGCTCGGATATTAGCAAAATACCGGCCATCTTTGTACAGTTTCTCAACACAAATACAAATGGCGCTTAACGATGAGCGTTTGTTGAAACAACTTAAAAAAAAAAAAAAAAAGGCCACATGTGCCCG] [+] EMBL CNS09QRS [ TAATCACCGGCCTGCCGCGCAGTGGGAAAACAAGCCGCGCCAAAGAGCTGGAAAAATACTTTACCGAGCTGGGTAAAGGGCCGGTGCACATCGTGTCCGAAGCGGACTGCATCGCTCGGTCCGGGTGCGGCGTGAAGGAGAGCTTCACCGACACGGGAAAGGAAAAGCAAATCCGTGCCAGCCTGAAATCGGAAGCGATGAAGCTGCTCACCAAGTCGACGCTGGTCATCATGGACGGAACGAATTACATTAAGGGCTATCGGTACGAAATCTTCTGCATGAGCAAAAACGCCCGTACGACCCAGTGCACGGTACACTGTGCCATGACGGTTGAGCAGCGAAGTGCTCGCAGGGAGGAGATTGTACAGAGTTCCTCGAGCGGGGAACTTGATGCGGAAACGTTCGATGCTCTTTGCCAGCGGTACGAGGAACCGCA GACACGAGCCGCTGGGATCGACCCCTGTTTACCGTGTACGGTGGAGAGGAGATGGAGCTGGCGCGCATCCACAGCGCACTGTACGAACAGGCCCCGCTGCCTCCGAATTTGGCCACGCAAAATATGCCACTGAGTGCGACCAATTTTCTGTTCGAGCTGGACAAAAGTACGCAGACGATCATCGATCAGATAGCGGCGGCAAGGAAAATTGGCCTGGACGGTCCGGTAGAGATACCGCAGGCGGGCATGCGTGCGGAAGTCCCGGCGAACATGAGCGTGGCGCA CTTAACCGGCATCGACGACAGTATTTGAACTACGT TTTATGCACACGAACGTCAGCGCGGATATTAGCAAAATACCGGCCATCTTTGTA ] [-] EMBL CNS09QRT [ CAAGCCGAAAAAAAGAGCTGGAAAAATACTTTACCGAGCTGGGTAAAGGGCCGGTGCACATCGTGTCCGAAGCGAACTGCATCGCTCGGTCCGGGTGCGGCGTGAAGGAGAGCTTCACCGACACGGGAAAGGAAAAGCAAATCCGTGCCAGCCTGAAATCGGAAGCGATGAAGCTGCTCACCAAGTCGACGCTGGTCATCATGGACGGAACGAATTACATTAAGGGCTATCGGTACGAAATCTTCTGCATGAGCAAAAACGCCCGTACGACCCAGTGCACGGTACACTGTGCCATGACGGTTGAGCAGCGAAGTGCTCGCAGGGAGGAGATTGTACAGAGTTCCTCGAGCGGGGAACTTGATGCGGAAACGTTCGATGCTCTTTGCCAGCGGTACGAGGAACCGCAGGACACGAGCCGCTGGGATCGACCCCTGTTTACCGTGTACGGTGGAGAGGAGATGGAG TGGCGCGCATCCACAGCGCACTGTACGAACAGGCCCCGCTGCCTCCGAATTTGGCCACGCAAAATATGCCACTGAGTGCGACC ] [-] EMBL CNS092ZP [ acaaaAAAGGGCTGGAAAATTACTTTACCGAGCTGGGTAAAGGGCCGGTGCACATCGTGTCCGAAGCGAACTGCATCGCTCGGTCCGGGTGCGGCGTGAAGGAGAGCTTCACCGACACGGGAAAGGAAAAGCAAATCCGTGCCAGCCTGAAATCGGAAGCGATGAAGCTGCTCACCAAGTCGACGCTGGTCATCATGGACGGAACGAATTACATTAAGGGCTATCGGTACGAAATCTTCTGCATGAGCAAAAACGCCCGTACGACCCAGTGCACGGTACACTGTGCCATGACGGTTGAGCAGCGAAATGCTCGCAGGGAGGAGATTGTATAGAGTTCCTCGAGCGGGGAACTTGATGCGGAAACGTTCGATGCTCTTTGCCAGCGGTACGAGGAACCGCAGGACACGAGCCGCTGGGATCGACCCCTGTTTACCGTGTACGGTGGAGAGGAGATGG GGTGGCGCGCATCCACAGCGCACTGTACGAACAGGCCCCGCTGCCTCCGAATTTGGCCACGCAAAATATGCCACTGAGTGCGACCAATTTTCTGTTCGAGCTGGACAAAAGTACGCAGACGATCATCGATCAGATAGCGGCGGCAAGGAAAATTGGCCTGGACGGTCCGGTAGAGATACCGCAGGCGGGCATGCGTGCGGAAGTCCCGGCGAACATGAGCGTGGCGCAGCTTAACCGGCATCGACGACAGTTTTTGAACTACGTGAAAATGCACACGAACGTTAGCTCGGATATTAGCAAAATACCGGCCATCTTTGTACAGTTTCTCAACACAAATACAAATGGCGCTTAACGATGAGCGTTTaat ] [+] EMBL BX614727 [ GGAAGTCCCAGCGAACATGAGCGTGGCGCAGCTGAACCGGCATCGGCGAAAGTTTTTGAACTACGTGAAAATGCACACGAACGTTAGCTCGGATATTAGCAAAATACCGGCCATCTT ] consensusID : consensus_7503#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 786 fasta sequence [TGGCCAAGGAATTGCCACGACGGTTGAACAGCGCTAACAACTCATCTCTAACTCTCCAGCAAAAATGCTCTTCTCATCGTAATCACCTGGCCTGCCATGCGCAGTGGGAAAACAAGCCGCGCCTAAAGAGCTGGAAAAATTACTTTACCTGAGGCTGGGTAAAGGGCCCGGTGCCACCATCGTGTTCGAAGGTCGGAACTTGCGATCCGCCTCCGAGCTCCCCGCGGGTTGCCGTGGCGTGCAAAGCGGAAGCAGGCCTTTCAACCGGGAACAACGGGGGAAACACAGGGAAACACAAGCAACAATTCCCGGTTGGCCCAAGGCCCTTGAACAACTTCGGGACAGGCCCGNATGAAACTCCTGGCGTCACACCCAAAGGTTACAGAAACCNGACTTGGGTACCAATCAACTTGGNACCCGGGGTACNANCTCGACACATTTTACCATTTTACAAGGGCGNCTCTTTAAATTCCCGCGAGGCTACGCCAGGANCAACAACTTACCTTTTCCCTTTGGGCAAAATTTGGNAAACGGCCCAGACGAAAAACAACCTNGCCACCCCCCNGGGTGTAACCGGGAAAGNCCAGCAAAAGGAGTTTATGGCCGACACTCGGGCGCNTCAACACCANACCTTGGGGTTGGCACACANATTGGGNAGCANCGTGTGGGTTNTGNGAAACCCCACAGGCTGGCACACAAGACATCTTGGCCTTTTCCCCGNCCCATATGTGCTGNGAAGNGAGGCAACGCAAATTTACTGGGTAACCGCAAAGCCAACANTTTNCA] [+] EMBL AL696663 [TGGCCAAGGAATTGCCACGACGGTTGAACAGCGCTAACAACTCATCTCTAACTCTCCAGCAAAAATGCTCTTCTCATCGTAATCACCTGGCCTGCCATGCGCAGTGGGAAAACAAGCCGCGCCTAAAGAGCTGGAAAAATTACTTTACCTGAGGCTGGGTAAAGGGCCCGGTGCCACCATCGTGTTCGAAGGTCGGAACTTGCGATCCGCCTCCGAGCTCCCCGCGGGTTGCCGTGGCGTGCAAAGCGGAAGCAGGCCTTTCAACCGGGAACAACGGGGGAAACACAGGGAAACACAAGCAACAATTCCCGGTTGGCCCAAGGCCCTTGAACAACTTCGGGACAGGCCCGNATGAAACTCCTGGCGTCACACCCAAAGGTTACAGAAACCNGACTTGGGTACCAATCAACTTGGNACCCGGGGTACNANCTCGACACATTTTACCATTTTACAAGGGCGNCTCTTTAAATTCCCGCGAGGCTACGCCAGGANCAACAACTTACCTTTTCCCTTTGGGCAAAATTTGGNAAACGGCCCAGACGAAAAACAACCTNGCCACCCCCCNGGGTGTAACCGGGAAAGNCCAGCAAAAGGAGTTTATGGCCGACACTCGGGCGCNTCAACACCANACCTTGGGGTTGGCACACANATTGGGNAGCANCGTGTGGGTTNTGNGAAACCCCACAGGCTGGCACACAAGACATCTTGGCCTTTTCCCCGNCCCATATGTGCTGNGAAGNGAGGCAACGCAAATTTACTGGGTAACCGCAAAGCCAACANTTTNCA] consensusID : consensus_7503#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 448 fasta sequence [AGAATCGCCACGAGGNGTAGGCTAAAACTCATCTCAATCTCCAGCAAAAATGCCTCTCATCGTAATCACCGGCCTGCCGCGCAGTGGGAAAACAAGCCGCGCCAAAGAGCTGGAAAAATACTTTACCGAGCTGGGTAAAGGGCCGGTGCACATCGTGTCCGAAGCGGACTGCATCGCTCGGTCCGGGTGCGGCGTGAAGGAGAGCTTCACCGACACGGGAAAGGAAAAGCAAATCCGTGCCAGCCTGAAATCGGAAGCGATGAAGCTGCGTCACCAAGTCGACGCTGGTCATCATGGACGGAACGAAGTTACAGTTAAGGGCTATCGGTACGAAAGTCGTTCTGCATGAGCNAAAACGCCCGTACGAGCCAGTGCACGGTACACTGTGCCATGACGGTTGAAGCAGCGGAAAATGCGTCGCAAGGAAGGAGATTTGTACCAGAGTTCC] [+] EMBL BX469158 [AGAATCGCCACGAGGNGTAGGCTAAAACTCATCTCAATCTCCAGCAAAAATGCCTCTCATCGTAATCACCGGCCTGCCGCGCAGTGGGAAAACAAGCCGCGCCAAAGAGCTGGAAAAATACTTTACCGAGCTGGGTAAAGGGCCGGTGCACATCGTGTCCGAAGCGGACTGCATCGCTCGGTCCGGGTGCGGCGTGAAGGAGAGCTTCACCGACACGGGAAAGGAAAAGCAAATCCGTGCCAGCCTGAAATCGGAAGCGATGAAGCTGCGTCACCAAGTCGACGCTGGTCATCATGGACGGAACGAAGTTACAGTTAAGGGCTATCGGTACGAAAGTCGTTCTGCATGAGCNAAAACGCCCGTACGAGCCAGTGCACGGTACACTGTGCCATGACGGTTGAAGCAGCGGAAAATGCGTCGCAAGGAAGGAGATTTGTACCAGAGTTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7503#0 -----------TTTACAAAACAAAAGTGCGGCAGGCTAA-AACTCATCTCAA--TCTCCA 46 consensus_7503#2 --------------AGAATCGCCACGAGGNGTAGGCTAA-AACTCATCTCAA--TCTCCA 43 consensus_7503#1 TGGCCAAGGAATTGCCACGACGGTTGAACAGC--GCTAACAACTCATCTCTAACTCTCCA 58 * * * ***** ********** * ****** consensus_7503#0 GCAAAAATGCC--TCTCATCGTAATCACC-GGCCTGCC--GCGCAGTGGGAAAACAAGCC 101 consensus_7503#2 GCAAAAATGCC--TCTCATCGTAATCACC-GGCCTGCC--GCGCAGTGGGAAAACAAGCC 98 consensus_7503#1 GCAAAAATGCTCTTCTCATCGTAATCACCTGGCCTGCCATGCGCAGTGGGAAAACAAGCC 118 ********** **************** ******** ******************** consensus_7503#0 GCGCC-AAAGAGCTGGAAAAAT-ACTTTACC--GAGCTGGGTAAAGGGCC-GGTGCA--C 154 consensus_7503#2 GCGCC-AAAGAGCTGGAAAAAT-ACTTTACC--GAGCTGGGTAAAGGGCC-GGTGCA--C 151 consensus_7503#1 GCGCCTAAAGAGCTGGAAAAATTACTTTACCTGAGGCTGGGTAAAGGGCCCGGTGCCACC 178 ***** **************** ******** *************** ***** * consensus_7503#0 ATCGTGTCCGAAGCGGACTGCATCGCTCGGTCCGGGTGCGGCGTGAAGGAGAGCTTCACC 214 consensus_7503#2 ATCGTGTCCGAAGCGGACTGCATCGCTCGGTCCGGGTGCGGCGTGAAGGAGAGCTTCACC 211 consensus_7503#1 ATCGTGTTCGAAG---GTCGGAACTTGCGATCCGCCTCCGAGCTCCCCGCGGGTTGCCGT 235 ******* ***** * * * ** **** * ** * * * * * * consensus_7503#0 GACACGGGAAAGGAAAAGCAAATCCGTGCCAGCCTGAAATCGGAAGCGATGAAGCTGC-T 273 consensus_7503#2 GACACGGGAAAGGAAAAGCAAATCCGTGCCAGCCTGAAATCGGAAGCGATGAAGCTGCGT 271 consensus_7503#1 GGCGTGC-AAAGCGGAAGCAGGCC--TTTCAACCGGGAA-CAACGGGGGAAACACAGGGA 291 * * * **** ***** * * ** ** * ** * * * * * * consensus_7503#0 CACCAAGTCGACGCTGGTCATCATGGACGGAACGAA-TTACA-TTAAGGGCTA--TCGGT 329 consensus_7503#2 CACCAAGTCGACGCTGGTCATCATGGACGGAACGAAGTTACAGTTAAGGGCTA--TCGGT 329 consensus_7503#1 AACACAAGCAACAATTCCCGGTTGGCCCAAGGCCCTTGAACAACTTCGGGACAGGCCCGN 351 ** * * ** * * * * * *** * *** * * * consensus_7503#0 ACGAAATC--TTCTG-CATGAGCAAAAACGCCCGTA--CGACCCAGTGCACGGTACACTG 384 consensus_7503#2 ACGAAAGTCGTTCTG-CATGAGCNAAAACGCCCGTA--CGAGCCAGTGCACGGTACACTG 386 consensus_7503#1 ATGAAACTCCTGGCGTCACACCCAAAGGTTACAGAAACCNGACTTGGGTACCAATCAACT 411 * **** * * ** * ** * * * * * * * ** ** consensus_7503#0 TGCCATGACGGTTGA-GCAGCG--AAATGC--TCGCAGGGA-GGAGATT-GTAT-AGAGT 436 consensus_7503#2 TGCCATGACGGTTGAAGCAGCGGAAAATGCG-TCGCAAGGAAGGAGATTTGTACCAGAGT 445 consensus_7503#1 TGGNACCCGGGGTACNANCTCGACACATTTTACCATTTTACAAGGGCGNCTCTTTAAATT 471 ** * ** * ** * ** * * * * * * consensus_7503#0 TCCTCGAGCGGGGAACTTGATGCGGAAACGTTCGATGCTCTTTGCCAGCGGTACGAGGAA 496 consensus_7503#2 TCC--------------------------------------------------------- 448 consensus_7503#1 CCCGCGAGGCTACGCCAGGANCAACAACTTACCTTTTCCCTTTGGGCAAAATTTGGNAAA 531 ** consensus_7503#0 CCGCAGACACGAG---CCGCTGGGATCGACCCCTGTTTACCGTGTACGGTGGAGAGGAGA 553 consensus_7503#2 ------------------------------------------------------------ consensus_7503#1 CGGCCCAGACGAAAAACAACCTNGCCACCCCCCNGGGTGTAACCGGGAAAGNCCAGCAAA 591 consensus_7503#0 TGGAGCTGGCGCGCATCCACAGCGCACTGTACGAACAGGCCCCGCTGCCTCCGAATTTGG 613 consensus_7503#2 ------------------------------------------------------------ consensus_7503#1 AGGAGTTTATGGCCGACACTCGGGCGCNTCAACACCANACCTTGGGGTTGGCACACANAT 651 consensus_7503#0 CCACGCAAAATATGCCACTGAGTGCGACCAATTTTCTGTTCGAGCTGGACAAAAGTACGC 673 consensus_7503#2 ------------------------------------------------------------ consensus_7503#1 T---GGGNAGCANCGTGTGGGTTNTGNGAAACCCCACAGGCTGGC-ACACAAGACATCTT 707 consensus_7503#0 AGACGATCATCGATCAGATAGCGGCGGCAAGGAAAATTGGCCTGGACGGTCCGGTAGAGA 733 consensus_7503#2 ------------------------------------------------------------ consensus_7503#1 GGCCTTTTCCCCGNCCCATATGTGCTGNGAAGNGAGGCAACGCAAATTTACTGG--GTAA 765 consensus_7503#0 TACCGCAGGCGGGCATGCGTGCGGAAGTCCCGGCGAACATGAGCGTGGCGCAGCTTAACC 793 consensus_7503#2 ------------------------------------------------------------ consensus_7503#1 CCGCAAAGCCAACANTTTNCA--------------------------------------- 786 consensus_7503#0 GGCATCGACGACAGTTTTTGAACTACGTGAAAATGCACACGAACGTTAGCTCGGATATTA 853 consensus_7503#2 ------------------------------------------------------------ consensus_7503#1 ------------------------------------------------------------ consensus_7503#0 GCAAAATACCGGCCATCTTTGTACAGTTTCTCAACACAAATACAAATGGCGCTTAACGAT 913 consensus_7503#2 ------------------------------------------------------------ consensus_7503#1 ------------------------------------------------------------ consensus_7503#0 GAGCGTTTGTTGAAACAACTTAAAAAAAAAAAAAAAAAGGCCACATGTGCCCG 966 consensus_7503#2 ----------------------------------------------------- consensus_7503#1 ----------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||