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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7505#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1209 fasta sequence
[TTTTTTTTAAGGGCATACACTCTTGCTCGGCAAAATTACAAAACCAAAGCTTTAATTTTATTTTTACATATCGCATGCTTACTCTACTTGCATCGACCGCATTCAGTGTTGCAGTCTTGCGGATCACATGGTGCATTACTCGCCGGTTTCTTTTTTACTATCCGATTGCAACGCGCGA-CCAGCTCATCCAGCTCCAGATTAACGTACCGCGCGTAGGTCGTAATGAAGGACAGTACCGGGTTCGTGCTGCCGGACAGTGAGCCGACCAGTTCGGCTGTTTTGCAAGGATGCAGCTTCAGGTACGGCCGGTACAGTACCGGATGGTGCACCATCGTGA-TCGCACTGTA-CCGCTCGTCCGGCGGTACGCATCCGCTAATCTGCAGCACCTCCCATGCTTCCTCCAGGTTTAACCGAGCGCCACCTTTCTCGTATATGTTAAACAGCAGTATAGGCACCTCGTAGCTTTCACAGTACAGCACGTGATACTCGAACGCTAGCATCCGGGCGGTGGGCTGCCCACCGCTGACAGCGGCTAGGCCCGGATCATCTTCCTCGTCCAGCTCGGCCATGCCCTCCAGCATCTCGGTCTGGGGGTTCGATTCGGTGCTCCGCACGTGCCGTACTGTCTCCAGACATAGGAAGTCCGGCTCCTTCTCC-CGCACCCATCGCCAACGGTCGACGCAGTTGCGTGACGCATGGACCAATTGGTCACAGTACAAGGTGAACTCGCTCAACTTCATCCTCGTTCGCT-GGGAGCGCTCCAAAAAGCGTGGTGTCGAGCTGTAACGAAACACACGAGGATTTTAAAACGAAGTATCTCCCGCCAAGCGCATCGTGGCGCACCTGTTTGACAGCCATGGAAACAATGGTTCACATCAACATTGCTATGCTGTGCTTATGCTCTGCGGTGCTCTGCGCCACTGAGGTGCTGGTAGGATGCAATGTATCCGGTTCTAGGTTGTGGAGTATACCCAGGCTGGTACGTTTGATATTCAACTTTTTTTAAGTGCTATTAAAATGCTTTTACGCCGAAATATTCCATCCTCCAAGTATGTGTTCAAGTTATGTTGCGAATGAGAGAAAAGTTATGATGCCGAGTATGCTGTCGGCTGTTGACAGGAGCTGAGTACGATTTTGTTTTGGCCAACTACCAACCAAATTACACGCACACAAAGATGCAATCTGCAAAATAACTGCAAACCTCCACCA]
[+] EMBL AGA283896 [TTTTTTTTAAGGGCATACACTCTTGCTCGGCAAAATTACAAAACCAAAGCTTTAATTTTATTTTTACATATCGCATGCTTACTCTACTTGCATCGACCGCATTCAGTGTTGCAGTCTTGCGGATCACATGGTGCATTACTCGCCGGTTTCTTTTTTACTATCCGATTGCAACGCGCGAGCCAGCTCATCCAGCTCCAGATTAACGTACCNNCCGTAGGTCGTAATGAAGGACAGTACCGGGTTCGTGCTGCCGGACAGTGAGCCGACCAGTTCGGCTGTTTTGCAAGGATGCAGCTTCAGGTACGGCCGGTACAGTACCGGATGGTGCACCATCGTGATTCGCACTGTACCCGCTCGTCCGGCGGTACGCATCCGCTAATCTGCAGCACCTCCCATGCTTCCTCCAGGTTTAACCGAGCGCCACCTTTCTCGTATATGTTAAAC ]
[+] EMBL CNS09KYZ [ TCGGCAAAATTACAAAACCAAAGCTTTAATTTTATTTTTACATATCGCATGCTTACTCTACTTGCATCGACCGCATTCAGTGTTGCAGTCTTGCGGATCACATGGTGCATTACTCGCCGGTTTCTTTTTTACTATCCGATTGCAACGCGCGA CCAGCTCATCCAGCTCCAGATTAACGTACGGCGCGTAGGTCGTAATGAAGGACAGTACCGGGTTCGTGCTGCCGGACAGTGAGCCGACCAGTTCGGCTGTTTTGCAAGGATGCAGCTTCAGGTACGGCCGGTACAGTACCGGATGGTGCACCATCGTGA TCGCACTGTA CCGCTCGTCCGGCGGTAC CATCCGCTAATCTGCAGCACCTCCCATGCTTCCTCCAGGTTTAACCGAGCGCCACCTTTCTCGTATATGTTAAACAGCAGTATAGGCACCTCGTAGCTTTCACAGTACAGCACGTGATACTCGAACGCTAGCATCCGGGCGGTGGGCTGCCCACCGCTGACAGC GCTAGGCCCGGATCATCTTCCTCGTCCAGCTCGGCCATGCCCTCCAGCATCTCGGTCTGGGGGTTCGATTCGGTGCTCCGCACGTGCCGTACTGTCTCCAGACATAGGAAGTCCGGCTCCTTCTCC CGCACCCATCGCCAACGGTCGACGCAGTTGCGTGACGCATGGACCAATTGGTCACAGTACAAGGTGAACTCGCTCAACTTCATCCTCGTTCGCT GGGAGCGCTCCAAAAAGCGTGGTGTCGAGCTGTAACGAAACACACGAGGATTTTAAAACGAAGTATCTCCCGCCAAGCGCATCGTGGCGCACCTGTTTGACAGCCATGGAAACAATGGTTCACATCAACATTGCTATGCTGTGCTTATGCTCTGCGGTGCTCTGCGCCACTGAGGTGCTGGTAGGATGCAATGTATCCGGTTCTAGGTTGTGGA AAAAACCAGGCTGGTACGTTTGATATTCAACTTTTTTTA ]
[-] EMBL BX618286 [ CCAGCTCATCCAGCTCCAGATTAACGTACCGCGCGTAGGTCGTAATGAAGGACAGTACCGGGTTCGTGCTGCCGGACAGTGAGCCGACCAGTTCGGCTGTTTTGCAAGGATGCAGCTTCAGGTACGGCCGGTACAGTACCGGATGGTGCACCATCGTGA TCGCACTGTA CCGCTCGTCCGGCGGTACGCATCCGCTAATCTGCAGCACCTCCCATGCTTCCTCCAGGTTTAACCGAGCGCCACCTTTCTCGTATATGTTAAACAGCAGTATAGGCACCTCGTAGCTTTCACAGTACAGCACGTGATACTCGAACGCTAGCATCCGGGCGGTGGGCTGCCCACCGCTGACAGCGGCTAGGCCCGGATCATCTTCCTCGTCCAGCTCGGCCATGCCCTCCAGCATCTCGGTCTGGGGGTTCGATTCGGTGCTCCGCACGTGCCGTACTGTCTCCAGACATAGGAAGTCCGGCTCCTTCTCC CGCACCCATCGCCAACGGTCGACGCAGTTGCGTGACGCATGGACCAATTGGTCACAGTACAAGGTGAACTCGCTCAACTTCATCCTCGTTCGCT GGGAGCGCTCCAAAAAGCGTGGTGTCGAGCTGTAACGAAACACACGAGGATTTTAAAACGAAGTATCTCCCGCCAAGCGCATCGTGGCGCACCTGTTTGACAGCCATGGAAACAATGGTTCACATCAACATTGCTATGCTGTGCTTATGCTCTGCGGTGCTCTGCGCCACTGAGGTGCTGGTAGGATGCAATGTATCCGGTTCTAGGTTGTGGAGTATACCCAGGCTGGTACGTTTGATATTCAACTTTTTTTAAGTGCTATTAAAATGCTTTTACGCCGAAATATTCCATCCTCC ]
[-] EMBL CNS09KYY [ CGGGTTCGTGCTGCCGGACAGTGAGCCGACCAGTTCTTTTGTTTTGCAAGGATGCAGCTTCAGGTACGGCCGGTACAGTACCGGATGGTGCACCATCGTGA TCGCACTGTA CCGCTCGTCCGGCGGTACGCATCCGCTAATCTGCAGCACCTCCCATGCTTCCTCCAGGTTTAACCGAGCGCCACCTTTCTCGTATATGTTAAACAGCAGTATAGGCACCTCGTAGCTTTCACAGTACAGCACGTGATACTCGAACGCTAGCATCCGGGCGGTGGGCTGCCCACCGCTGACAGCGGCTAGGCCCGGATCATCTTCCTCGTCCAGCTCGGCCATGCCCTCCAGCATCTCGGTCTGGGGGTTCGATTTCGTG TCCGCACGTGCCGTACTGTCTCCAGACATAGGAAGTCCGGCTCCTTCTCCGCGCACCCATCGCCAACGGTCGACGCAGTTGCGTGACGCATGGACCAATTGGTCACAGTACAAGGTGAACTCGCTCAACTTCATCCTCGTTCGCT GGGAGCGCTCCAAAAAGCGTGGTGTCGAGCTGTAACGAAACACACGAGGATTTTAAAACGAAGTATCTCCCGCCAAGCGCATCGTGGCGCACCTGTTTGACAGCCATGGAAACAATGGTTCACATCAACATTGCTATGCTGTGCTTATGCTCTGCGGTGCTCTGCGCCACTGAGGTGCTGGTAGGATGCAATGTATCCGGTTCTAGGTTGTGGAGTATACCCAGGCTGGTACGTTTGATATTCAACTTTTTTTAAGTGCTATTAAAATGCTTTTACGCCGAAATATTCCATCCTCCAAGTATGTGTTCAAGTTATGTTGCGAATGAGAGAAAAGTTATGATGCCGAGTATGCTGTCGGCTGTTGACAGGAGCTGAGTACGATTTTGTTTTGGCCAACTACCAACCAAATTACACGCACACAAAGATGCAATCTGCAAAATAACTGCAAACCTCCACCA]
[-] EMBL AGA285190 [ CAACTTCATCCTCGTTCGCTGGGGAGCGCTCCAAAAAGCGTGGTGTCGAGCTGTAACGAAACACACGAGGATTTTAAAACGAAGTATCTCCCGCCAAGCGCATCGTGGCGCACCTGTTTGACAGCCATGGAAACAATGGTTCACATCAACATTGCTATGCTGTGCTTATGCTCTGCGGTGCTCTGCGCCACTGAGGTGCTGGTAGGATGCAATGTATCCGGTTCTAGGTTGTGGAGTATACCCAGGCTGGTACGTTTGATATTCAACTTTTTTTAAGTGCTATTAAAATGCTTTTACGCCGAAATATTCCATCCTCCAAGTATGTGTTCAAGTTATGTTGCGAATGAGAGAAAAGT ]
consensusID : consensus_7505#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence
[CGGCCATGCCCTCCAGCATCTCGGTCTGGGGGTTCGATTCGGTGCTCCGCACGTGCCGTACTGTCTCCAGACATAGGAAGTCCGGCTCCTTCTCCCGCACCCATCGCCAACGGTCGACGCAGTTGCGTGACGCATGGACCAATTGGTCACAGTACAAGGTGAACTCGCTCAACTTCATCCTCGTTCGCTGGGAGCGCTCCAAAAAGCGTGGTGTCGAGCTGTTTGACAGCCATGGAAACAATGGTTCACATCAACATTGCTATGCTGTGCTTATGCTCTGCGGTGCTCTGCGCCACTGAGGTGCTGGTAGGATGCAATGTATCCGGTTCTAGGTTGTGGAGTATACCCAGGCTGGTACGTTTGATATTCAACTTTTTTTAAGTGCTATTAAAATGCTTTTACGCCGAAATATTCCATCCTCCAAGTATGTGTTCAAGTTATGTTGCGAATGAGAGAAAAGTTATGATGCCGAGTATGCTGTCGGCTGTTGNCAGGAGCTGAGTACGATTTTGTTTTGGCCAACTACCAACCAAATTACACGCACACAAAGATGCTAGAGTTGATAGTAAAATTGTCGGAGT]
[-] EMBL BX620322 [CGGCCATGCCCTCCAGCATCTCGGTCTGGGGGTTCGATTCGGTGCTCCGCACGTGCCGTACTGTCTCCAGACATAGGAAGTCCGGCTCCTTCTCCCGCACCCATCGCCAACGGTCGACGCAGTTGCGTGACGCATGGACCAATTGGTCACAGTACAAGGTGAACTCGCTCAACTTCATCCTCGTTCGCTGGGAGCGCTCCAAAAAGCGTGGTGTCGAGCTGTTTGACAGCCATGGAAACAATGGTTCACATCAACATTGCTATGCTGTGCTTATGCTCTGCGGTGCTCTGCGCCACTGAGGTGCTGGTAGGATGCAATGTATCCGGTTCTAGGTTGTGGAGTATACCCAGGCTGGTACGTTTGATATTCAACTTTTTTTAAGTGCTATTAAAATGCTTTTACGCCGAAATATTCCATCCTCCAAGTATGTGTTCAAGTTATGTTGCGAATGAGAGAAAAGTTATGATGCCGAGTATGCTGTCGGCTGTTGNCAGGAGCTGAGTACGATTTTGTTTTGGCCAACTACCAACCAAATTACACGCACACAAAGATGCTAGAGTTGATAGTAAAATTGTCGGAGT]
consensusID : consensus_7505#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 217 fasta sequence
[GGAAACAATGGTTCACATCAACATTGCTATGCTGTGCTTATGCTCTGCGGTGCTCTGCGCCACTGAGGTGCTGGTAGGATGCAATGTATCCGGTTCTAGGTTGTGGAGTATACCCAGGCTGGTACGTTTGATATTCAACTTTTTTTAAGTGCTATTAAAATGCTTTTACGCCGAAATATTCCATCCTCCAAGTATGTGAAACAAGCCGGGCCGATGC]
[-] EMBL AL930480 [GGAAACAATGGTTCACATCAACATTGCTATGCTGTGCTTATGCTCTGCGGTGCTCTGCGCCACTGAGGTGCTGGTAGGATGCAATGTATCCGGTTCTAGGTTGTGGAGTATACCCAGGCTGGTACGTTTGATATTCAACTTTTTTTAAGTGCTATTAAAATGCTTTTACGCCGAAATATTCCATCCTCCAAGTATGTGAAACAAGCCGGGCCGATGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7505#0 TTTTTTTTAAGGGCATACACTCTTGCTCGGCAAAATTACAAAACCAAAGCTTTAATTTTA 60
consensus_7505#1 ------------------------------------------------------------
consensus_7505#2 ------------------------------------------------------------
consensus_7505#0 TTTTTACATATCGCATGCTTACTCTACTTGCATCGACCGCATTCAGTGTTGCAGTCTTGC 120
consensus_7505#1 ------------------------------------------------------------
consensus_7505#2 ------------------------------------------------------------
consensus_7505#0 GGATCACATGGTGCATTACTCGCCGGTTTCTTTTTTACTATCCGATTGCAACGCGCGACC 180
consensus_7505#1 ------------------------------------------------------------
consensus_7505#2 ------------------------------------------------------------
consensus_7505#0 AGCTCATCCAGCTCCAGATTAACGTACCGCGCGTAGGTCGTAATGAAGGACAGTACCGGG 240
consensus_7505#1 ------------------------------------------------------------
consensus_7505#2 ------------------------------------------------------------
consensus_7505#0 TTCGTGCTGCCGGACAGTGAGCCGACCAGTTCGGCTGTTTTGCAAGGATGCAGCTTCAGG 300
consensus_7505#1 ------------------------------------------------------------
consensus_7505#2 ------------------------------------------------------------
consensus_7505#0 TACGGCCGGTACAGTACCGGATGGTGCACCATCGTGATCGCACTGTACCGCTCGTCCGGC 360
consensus_7505#1 ------------------------------------------------------------
consensus_7505#2 ------------------------------------------------------------
consensus_7505#0 GGTACGCATCCGCTAATCTGCAGCACCTCCCATGCTTCCTCCAGGTTTAACCGAGCGCCA 420
consensus_7505#1 ------------------------------------------------------------
consensus_7505#2 ------------------------------------------------------------
consensus_7505#0 CCTTTCTCGTATATGTTAAACAGCAGTATAGGCACCTCGTAGCTTTCACAGTACAGCACG 480
consensus_7505#1 ------------------------------------------------------------
consensus_7505#2 ------------------------------------------------------------
consensus_7505#0 TGATACTCGAACGCTAGCATCCGGGCGGTGGGCTGCCCACCGCTGACAGCGGCTAGGCCC 540
consensus_7505#1 ------------------------------------------------------------
consensus_7505#2 ------------------------------------------------------------
consensus_7505#0 GGATCATCTTCCTCGTCCAGCTCGGCCATGCCCTCCAGCATCTCGGTCTGGGGGTTCGAT 600
consensus_7505#1 ----------------------CGGCCATGCCCTCCAGCATCTCGGTCTGGGGGTTCGAT 38
consensus_7505#2 ------------------------------------------------------------
consensus_7505#0 TCGGTGCTCCGCACGTGCCGTACTGTCTCCAGACATAGGAAGTCCGGCTCCTTCTCCCGC 660
consensus_7505#1 TCGGTGCTCCGCACGTGCCGTACTGTCTCCAGACATAGGAAGTCCGGCTCCTTCTCCCGC 98
consensus_7505#2 ------------------------------------------------------------
consensus_7505#0 ACCCATCGCCAACGGTCGACGCAGTTGCGTGACGCATGGACCAATTGGTCACAGTACAAG 720
consensus_7505#1 ACCCATCGCCAACGGTCGACGCAGTTGCGTGACGCATGGACCAATTGGTCACAGTACAAG 158
consensus_7505#2 ------------------------------------------------------------
consensus_7505#0 GTGAACTCGCTCAACTTCATCCTCGTTCGCTGGGAGCGCTCCAAAAAGCGTGGTGTCGAG 780
consensus_7505#1 GTGAACTCGCTCAACTTCATCCTCGTTCGCTGGGAGCGCTCCAAAAAGCGTGGTGTCGAG 218
consensus_7505#2 ------------------------------------------------------------
consensus_7505#0 CTGTAACGAAACACACGAGGATTTTAAAACGAAGTATCTCCCGCCAAGCGCATCGTGGCG 840
consensus_7505#1 CTGT-------------------------------------------------------- 222
consensus_7505#2 ------------------------------------------------------------
consensus_7505#0 CACCTGTTTGACAGCCATGGAAACAATGGTTCACATCAACATTGCTATGCTGTGCTTATG 900
consensus_7505#1 -------TTGACAGCCATGGAAACAATGGTTCACATCAACATTGCTATGCTGTGCTTATG 275
consensus_7505#2 ------------------GGAAACAATGGTTCACATCAACATTGCTATGCTGTGCTTATG 42
******************************************
consensus_7505#0 CTCTGCGGTGCTCTGCGCCACTGAGGTGCTGGTAGGATGCAATGTATCCGGTTCTAGGTT 960
consensus_7505#1 CTCTGCGGTGCTCTGCGCCACTGAGGTGCTGGTAGGATGCAATGTATCCGGTTCTAGGTT 335
consensus_7505#2 CTCTGCGGTGCTCTGCGCCACTGAGGTGCTGGTAGGATGCAATGTATCCGGTTCTAGGTT 102
************************************************************
consensus_7505#0 GTGGAGTATACCCAGGCTGGTACGTTTGATATTCAACTTTTTTTAAGTGCTATTAAAATG 1020
consensus_7505#1 GTGGAGTATACCCAGGCTGGTACGTTTGATATTCAACTTTTTTTAAGTGCTATTAAAATG 395
consensus_7505#2 GTGGAGTATACCCAGGCTGGTACGTTTGATATTCAACTTTTTTTAAGTGCTATTAAAATG 162
************************************************************
consensus_7505#0 CTTTTACGCCGAAATATTCCATCCTCCAAGTATGTGTT-CAAGTTATGTTGCGAATGAGA 1079
consensus_7505#1 CTTTTACGCCGAAATATTCCATCCTCCAAGTATGTGTT-CAAGTTATGTTGCGAATGAGA 454
consensus_7505#2 CTTTTACGCCGAAATATTCCATCCTCCAAGTATGTGAAACAAGCCGGGCCGATGC----- 217
************************************ **** * *
consensus_7505#0 GAAAAGTTATGATGCCGAGTATGCTGTCGGCTGTTGACAGGAGCTGAGTACGATTTTGTT 1139
consensus_7505#1 GAAAAGTTATGATGCCGAGTATGCTGTCGGCTGTTGNCAGGAGCTGAGTACGATTTTGTT 514
consensus_7505#2 ------------------------------------------------------------
consensus_7505#0 TTGGCCAACTACCAACCAAATTACACGCACACAAAGATGC---AATCTGCAAAATAACTG 1196
consensus_7505#1 TTGGCCAACTACCAACCAAATTACACGCACACAAAGATGCTAGAGTTGATAGTAAAATTG 574
consensus_7505#2 ------------------------------------------------------------
consensus_7505#0 CAAACCTCCACCA 1209
consensus_7505#1 TCGGAGT------ 581
consensus_7505#2 -------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||