These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7507#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 909 fasta sequence [CCGACAGTGTTGTATATTCATGTGTAAAGCATGTAGGCATAAGTGATAATAATTTCCGAGTGACAAGGGTATGTGTGTGAGTGTATAGGTGCGTAGTACATAAGATACATGGTTGGTGGATGAACGCGCGCGCAGCAAGAAAAAGAAAGCACCAATGTTTTGCGGCGAACGCGTTTCTTTGTCTCTCAAACCTGTAGATCTGTGCTGATCTATGAACAGCGCGATAAAAAAGAGGTTCAGTCGTGTGCATGAGTGTGTATTGGCATTGTGTAAGCCAAATTGAACTTGAAGTTTCATGTTTGACGCTTTCGTAGGAAGAAGAGAAAATAACCAGAAAGTCAATCAAACGCTTGTCGATGGACGGCAAATTGTGTCACACTGTATGAGATATGGATAAGAATAAGTGTGACAGAAATCAGTGCACTGGCTAACGCTAGGATTAACGCAACAGTTAATGCAAATT-GGTCGGAGTATAACGCATTGGAAAAAAGCGACAGCGCAGCAAATGTATATTGTATGTAAATAGTAAACACAATTACTACTCCGAACGGTGTTTTGCGCTACAGGACAATGATTTCAGCGGAGGGCATGCTGTGCTGGAAACGTATTGCATTTTCACAGCATCGCGGGGCGGGGCTTGGTTTTAGCAGCTATGTTGCGCAGGCAGCGAGCATAATGTAGACAAGTTTTCCATAGTCTTCGTACGTTTCTCAACCATTTGTAGCAATACTATCGTTTATATCACTATTTCTTTTCGCTCTGTGATGGCAACGGGGGACACGACCTCCGAGATTCATTGTCGCCTCTGCATTATTACACATTCTTTCTAAAACCTGTAAACGTTTAAGCAATGCCAGCGCTATCCTTCGCTCGCAGCGTCCCACCAAGACCCGAAAGGGTAAGGCTGGA] [+] EMBL BM601474 [CCGACAGTGTTGTATATTCATGTGTAAAGCATGTAGGCATAAGTGATAATAATTTCCGAGTGACAAGGGTATGTGTGTGAGTGTATAGGTGCGTAGTACATAAGATACATGGTTGGTGGATGAACGCGCGCGCAGCAAGAAAAAGAAAGCACCAATGTTTTGCGGCGAACGCGTTTCTTTGTCTCTCAAACCTGTAGATCTGTGCTGATCTATGAACAGCGCGATAAAAAAGAGGTTCAGTCGTGTGCATGAGTGTGTATTGGCATTGTGTAAGCCAAATTGAACTTGAAGTTTCATGTTTGACGCTTTCGTAGGAAGAAGAGAAAATAACCAGAAAGTCAATCAAACGCTTGTCGATGGACGGCAAATTGTGTCACACTGTATGAGATATGGATAAGAATAAGTGTGACAGAAATCAGTGCACTGGCTAACGCTAGGATTAACGCAACAGTTAATGCAAATT GGTCGGAGTATAACGCATTGGAAAAAAGCGACAGCGCAGCAAATGTATATTGTATGTAAATAGTAAACACAATTACTACTCCGAACGGTGTTTTGCGCTACAGGACAATGATTTCAGCGGAGGGCATGCTGTGCTGGAAACGTATTGCATTTTCACAGCATCGCGGGGCGGGGCTTGGTTTTAGCAGCT ] [+] EMBL BX614557 [ TGCAAATTCGGTCGGAGTATAACGCATTGGAAAAAAGCGACAGCGCATCAAATGTATATTGTATGTAAATAGTAAACACAATTACTACTCCGAACGGTGTTTTGCGCTACAGGACAATGATTTCAGCGGAGGGCATGCTGTGCTGGAAACGTATTGCATTTTCACAGCATCGCGGGGCGGGGCTTGGTTTTAGCAGCTATGTTGCGCAGGCAGCGAGCATAATGTAGACAAGTTTTCCATAGTCTTCGTACGTTTCTCAACCATTTGTAGCAATACTATCGTTTATATCACTATTTCTTTTCGCTCTGTGATGGCAACGGGGGACACGACCTCCGAGATTCATTGTCGCCTCTGCATTATTACACATTCTTTCTAAAACCTGTAAACGTTTAAGCAATGCCAGCGCTATCCTTCGCTCGCAGCGTCCCACCAAGACCCGAAAGGGTAAGGCTGGA] consensusID : consensus_7507#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence [CCGCCCACGCGTCCGACTGCCTGCTCGAGTCGGTCGACGCTCGCAAAAGCCGGGGCAGCTCGAAGCGTTCCTCGCGCCGACCGAAGGGCGTCAATATTGAGATCTACCATCCGAAGGGTGTGATGGTGTGGTACCCGTACCGTGCCGGCATGGAACTGTTCGGCATCGAGATTTTCATCAACAAGGCAAACCAACCGTCGTCGTCGGGCGACTCGAGTGAGGAAGAGTCCACACCGCCGGTGTGTGATATCTGTCTCAACACGACCGAAGTGTCGTACGGCAAGTTTATACTGCGCAGCGAGGACGCCGTGATCCGCAGCCGGGACCACGTATACTACAATGCGATCGTGAAGAAAACCAGCGGCAAGGCGTACGTGTCCCGATCGAACGATTTCTACGTGTCAGAAAGTCGCATTCTGCTGGGTGATATGACGGAAAAGGCTAGCTCGTGCAATGGTACTACCGCCGTTGCAAACCTTTCCGACAACGATAAGCGGCTGGCGGATGAGATCAAGCTGCTGGAAGCGATTCTGCTCGAGGTCAGTGATCAGTGCCAGGCCAATCGTACCAAGCAGTTGCTGCTGAGTGCGGAAACACCTACCCGGTACGATGCCAAGCAGCTGTACCAAGTATGTGGCAGGGCAGCTTGGAACAGAAGTTGCCCGCGAT] [+] EMBL BM600787 [CCGCCCACGCGTCCGACTGCCTGCTCGAGTCGGTCGACGCTCGCAAAAGCCGGGGCAGCTCGAAGCGTTCCTCGCGCCGACCGAAGGGCGTCAATATTGAGATCTACCATCCGAAGGGTGTGATGGTGTGGTACCCGTACCGTGCCGGCATGGAACTGTTCGGCATCGAGATTTTCATCAACAAGGCAAACCAACCGTCGTCGTCGGGCGACTCGAGTGAGGAAGAGTCCACACCGCCGGTGTGTGATATCTGTCTCAACACGACCGAAGTGTCGTACGGCAAGTTTATACTGCGCAGCGAGGACGCCGTGATCCGCAGCCGGGACCACGTATACTACAATGCGATCGTGAAGAAAACCAGCGGCAAGGCGTACGTGTCCCGATCGAACGATTTCTACGTGTCAGAAAGTCGCATTCTGCTGGGTGATATGACGGAAAAGGCTAGCTCGTGCAATGGTACTACCGCCGTTGCAAACCTTTCCGACAACGATAAGCGGCTGGCGGATGAGATCAAGCTGCTGGAAGCGATTCTGCTCGAGGTCAGTGATCAGTGCCAGGCCAATCGTACCAAGCAGTTGCTGCTGAGTGCGGAAACACCTACCCGGTACGATGCCAAGCAGCTGTACCAAGTATGTGGCAGGGCAGCTTGGAACAGAAGTTGCCCGCGAT] consensusID : consensus_7507#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 667 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCCCAGGC-TGGAGTAAACCGTAAGCATCATCTACTAGCAACGATTGCCCTGCTATGGCTGGTGGCCGCCAACTGCC-TGCTCGAGTCGGTCGACGCTCGCAAAAGCCGGGGCAGCTCGAAGCGTTCCTCGCGCCGACCGAAGGGCGTCAATATTGAGATCTACCATCCGAAGGGTGTGATGGTGTGGTACCCGTACCGTGCCGGCATGGAACTGTTCGGCATCGAGATTTTCATCAACAAGGCAAACCAACCGTCGTCGTCGGGCGACTCGAGTGAGGAAGAGTCCACACCGCCGGTGTGTGATATCTGTCTCAACACGACCGAAGTGTCGTACGGCAAGTTTATACTGCGCAGCGAGGACGCCGTGATCCGCAGCCGGGACCACGTATACTACAATGCGATCGTGAAGAAAACCAGCGGCAAGGCGTACGTGTCCCGATCGAACGATTTCTACGTGTCAGAAAGTCGCATTCTGCTGGGTGATATGACGGAAAAGGCTAGCTCGTGCAATGGTACTACCGCCGTTGCAAACCTTTCCGACAACGATAAGCGGCTGGCGGATGAGATCAAGCTGCTGGAAGCGATTCTGCTCGAGGTCAGTGATCAGTGCCAGGCCAATCGTACCAAGCAGTTGCTGCTGAG] [+] EMBL BM576857 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGTAAACCGTAAGCATCATCTACTAGCAACGATTGCCCTGCTATGGCTGGTGGCCGCCAGCTGCCTTGCTCGAGTCGGTCGACGCTCGCAAAAGCCGGGGCAGCTCGAAGCGTTCCTCGCGCCGACCGAAGGGCGTCAATATTGAGATCTACCATCCGAAGGGTGTGATGGTGTGGTACCCGTACCGTGCCGGCATGGAACTGTTCGGCATCGAGATTTTCATCAACAAGGCAAACCAACCGTCGTCGTCGGGTGACTCGAGTGAGGAAGAGTCCATACCGCCGGTGTGTGATATCTGTCTCAACACGACCGAAGTGTCGTACGGCAAGTTTATACTGCGCAGCGAGGACGCCGTGATCCGCAGCCGGGACCACGTGTACTACAATGCGATCGTGAAGAAAACCAGCGGCAAGGCGTACGTGTCCCGATCGAACGATTTCTACGTGTCGGAAAGTCGCATTCTGCTGGGTGATATGACGGAAAAGGCTAGCTCGTGCAATGGTACTACCGCCGTTGCAAACCTGTCCGAC ] [+] EMBL BM641818 [ CCGCCCACGCGTCCG GGC TGGAGTAAACCGTAAGCATCATCTACTAGCAACGATTGCCCTGCTATGGCTGGTGGCCGCCAACTGCC TGCTCGAGTCGGTCGACGCTCGCAAAAGCCGGGGCAGCTCGAAGCGTTCCTCGCGCCGACCGAAGGGCGTCAATATTGAGATCTACCATCCGAAGGGTGTGATGGTGTGGTACCCGTACCGTGCCGGCATGGAACTGTTCGGCATCGAGATTTTCATCAACAAGGCAAACCAACCGTCGTCGTCGGGCGACTCGAGTGAGGAAGAGTCCACACCGCCGGTGTGTGATATCTGTCTCAACACGACCGAAGTGTCGTACGGCAAGTTTATACTGCGCAGCGAGGACGCCGTGATCCGCAGCCGGGACCACGTATACTACAATGCGATCGTGAAGAAAACCAGCGGCAAGGCGTACGTGTCCCGATCGAACGATTTCTACGTGTCAGAAAGTCGCATTCTGCTGGGTGATATGACGGAAAAGGCTAGCTCGTGCAATGGTACTACCGCCGTTGCAAACCTTTCCGACAACGATAAGCGGCTGGCGGATGAGATCAAGCTGCTGGAAGCGATTCTGCTCGAGGTCAGTGATCAGTGCCAGGCCAATCGTACCAAGCAGTTGCTGCTG ] [+] EMBL BM603592 [ cgaCCCACGCGTCCGAGATGGC TGGAGTAAACCGTAAGCATCATCTACTAGCAACGATTGCCCTGCTATGGCTGGTGGCCGCCAACTGCC TGCTCGAGTCGGTCGACGCTCGCAAAAGCCGGGGCAGCTCGAAGCGTTCCTCGCGCCGACCGAAGGGCGTCAATATTGAGATCTACCATCCGAAGGGTGTGATGGTGTGGTACCCGTACCGTGCCGGCATGGAACTGTTCGGCATCGAGATTTTCATCAACAAGGCAAACCAACCGTCGTCGTCGGGCGACTCGAGTGAGGAAGAGTCCACACCGCCGGTGTGTGATATCTGTCTCAACACGACCGAAGTGTCGTACGGCAAGTTTATACTGCGCAGCGAGGACGCCGTGATCCGCAGCCGGGACCACGTATACTACAATGCGATCGTGAAGAAAACCAGCGGCAAGGCGTACGTGTCCCGATCGAACGATTTCTACGTGTCAGAAAGTCGCATTCTGCTGGGTGATATGACGGAAAAGGCTAGCTCGTGCAATGGTACTACCGCCGTTGCAAACCTTTCCGACAACGATAAGCGGCTGGCGGATGAGATCAAGCTGCTGGAAGCGATTCTGCTCGAGGTCAGTGATCAGTGCCAGGCCAATCGTACCAAGCAGTTGCTGCTGAG] consensusID : consensus_7507#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [CCGCGGACGCGTGGGCGCTCGTACTGTGAAGATGGCTGGAGTAAACCGTAAGCATCATCTACTAGCAACGATTGCCCTGCTATGGCTGGTGGCCGCCAACTGCCTGCTCGAGTCGGTCGACGCTCGCAAAAGCCGGGGCAGCTCGAAGCGTTCCTCGCGCCGACCGAAGGGCGTCAATATTGAGATCTACCATCCGAAGGGTGTGATGGTGTGGTACCCGTACCGTGCCGGCATGGAACTGTTCGGCATCGAGATTTTCATCAACAAGGCAAACCAACCGTCGTCGTCGGGCGACTCGAGTGAGGAAGAGTCCACACCGCCGGTGTGTGATATCTGTCTCAACACGACCGAAGTGTCGTACGGCAAGTTTATACTGCGCAGCGAGGACGCCGTGATCCGCAGCCGGGACCACGTATACTACAATGCGATCGTGAAGAAAACCAGCG] [+] EMBL BM584884 [CCGCGGACGCGTGGGCGCTCGTACTGTGAAGATGGCTGGAGTAAACCGTAAGCATCATCTACTAGCAACGATTGCCCTGCTATGGCTGGTGGCCGCCAACTGCCTGCTCGAGTCGGTCGACGCTCGCAAAAGCCGGGGCAGCTCGAAGCGTTCCTCGCGCCGACCGAAGGGCGTCAATATTGAGATCTACCATCCGAAGGGTGTGATGGTGTGGTACCCGTACCGTGCCGGCATGGAACTGTTCGGCATCGAGATTTTCATCAACAAGGCAAACCAACCGTCGTCGTCGGGCGACTCGAGTGAGGAAGAGTCCACACCGCCGGTGTGTGATATCTGTCTCAACACGACCGAAGTGTCGTACGGCAAGTTTATACTGCGCAGCGAGGACGCCGTGATCCGCAGCCGGGACCACGTATACTACAATGCGATCGTGAAGAAAACCAGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7507#2 ----------------------------CCGCCCACGCGTC--CGCCCACGCGTCCGCCC 30 consensus_7507#3 ----------------------------CCGCGGACGCGTGGGCGCTCGTACTGTGAAGA 32 consensus_7507#1 ------------------------------------------------------------ consensus_7507#0 CCGACAGTGTTGTATATTCATGTGTAAAGCATGTAGGCATAAGTGATAATAATTTCCGAG 60 consensus_7507#2 AGGCTGGAGTAAACCGTAAGCATCATCTACTAGCAACGATTGCCCTGCTATGGCTGGTGG 90 consensus_7507#3 TGGCTGGAGTAAACCGTAAGCATCATCTACTAGCAACGATTGCCCTGCTATGGCTGGTGG 92 consensus_7507#1 --------------------------------------------------CCGCCCACG- 9 consensus_7507#0 TGACAAGGGTATGTGTGTGAGTGTATAGGTGCGTAGTACATAAGATAC-ATGGTTGGTGG 119 * * consensus_7507#2 CCGCCAACTGCCTGCTCGAGTCGGTCGACGCTCGCAAAAGCCGGGGC-AGCTCGAAGC-- 147 consensus_7507#3 CCGCCAACTGCCTGCTCGAGTCGGTCGACGCTCGCAAAAGCCGGGGC-AGCTCGAAGC-- 149 consensus_7507#1 CGTCCGACTGCCTGCTCGAGTCGGTCGACGCTCGCAAAAGCCGGGGC-AGCTCGAAGC-- 66 consensus_7507#0 ATGAACGCGCGCGCAGCAAGAAAAAGAAAGCACCAATGTTTTGCGGCGAACGCGTTTCTT 179 * * * ** * ** * * * *** * * ** * consensus_7507#2 -GTTCCTCGCGCCGACCGAAGGGCGTCAATAT-TGAGATCTACCATCCGAAGGGTGT--G 203 consensus_7507#3 -GTTCCTCGCGCCGACCGAAGGGCGTCAATAT-TGAGATCTACCATCCGAAGGGTGT--G 205 consensus_7507#1 -GTTCCTCGCGCCGACCGAAGGGCGTCAATAT-TGAGATCTACCATCCGAAGGGTGT--G 122 consensus_7507#0 TGTCTCTCAAACCTGTAGATCTGTGCTGATCTATGAACAGCGCGATAAAAAAGAGGTTCA 239 ** *** ** ** * * ** * *** * ** ** * ** consensus_7507#2 ATGGTGTG---------GTACCCGTACCGTGCCGGC---ATGGAACTG-----TTCGGCA 246 consensus_7507#3 ATGGTGTG---------GTACCCGTACCGTGCCGGC---ATGGAACTG-----TTCGGCA 248 consensus_7507#1 ATGGTGTG---------GTACCCGTACCGTGCCGGC---ATGGAACTG-----TTCGGCA 165 consensus_7507#0 GTCGTGTGCATGAGTGTGTATTGGCATTGTGTAAGCCAAATTGAACTTGAAGTTTCATGT 299 * ***** *** * * *** ** ** ***** *** consensus_7507#2 TCGAGATTTTCATC--AACAAGGCAAACCAACCGTC--GTCG-TCGGGCGACT-CGAGTG 300 consensus_7507#3 TCGAGATTTTCATC--AACAAGGCAAACCAACCGTC--GTCG-TCGGGCGACT-CGAGTG 302 consensus_7507#1 TCGAGATTTTCATC--AACAAGGCAAACCAACCGTC--GTCG-TCGGGCGACT-CGAGTG 219 consensus_7507#0 TTGACGCTTTCGTAGGAAGAAGAGAAAATAACCAGAAAGTCAATCAAACGCTTGTCGATG 359 * ** **** * ** *** *** **** *** ** ** * ** consensus_7507#2 AGGAAGAGTCCACACCGCCGGTGTGTGATATCTGTCTCAACACGACCGAAGTGTCGTACG 360 consensus_7507#3 AGGAAGAGTCCACACCGCCGGTGTGTGATATCTGTCTCAACACGACCGAAGTGTCGTACG 362 consensus_7507#1 AGGAAGAGTCCACACCGCCGGTGTGTGATATCTGTCTCAACACGACCGAAGTGTCGTACG 279 consensus_7507#0 GACGGCAAATTGTGTCAC-ACTGTATGAGATATGGATAAGAATAAGTGTGACAGAAATCA 418 * * * *** *** ** ** * * * * * * consensus_7507#2 GCAAGTTTA-TACTGCGCAGCGAGGACGCCGTGATC--CGCAGCCGGGACCACGTATACT 417 consensus_7507#3 GCAAGTTTA-TACTGCGCAGCGAGGACGCCGTGATC--CGCAGCCGGGACCACGTATACT 419 consensus_7507#1 GCAAGTTTA-TACTGCGCAGCGAGGACGCCGTGATC--CGCAGCCGGGACCACGTATACT 336 consensus_7507#0 GTGCACTGGCTAACGC-TAGGATTAACGCAACAGTTAATGCAAATTGGTCGGAGTATAAC 477 * * ** ** ** **** * *** ** * ***** consensus_7507#2 ACAATGCGATCGTGAAGAAAACCAGCG---GCAAGGCGTACGTGTCCCGATCGAACGATT 474 consensus_7507#3 ACAATGCGATCGTGAAGAAAACCAGCG--------------------------------- 446 consensus_7507#1 ACAATGCGATCGTGAAGAAAACCAGCG---GCAAGGCGTACGTGTCCCGATCGAACGATT 393 consensus_7507#0 GCATTGGAAAAAAGCGACAGCGCAGCAAATGTATATTGTATGTAAATAGTAAACACAATT 537 ** ** * * * **** consensus_7507#2 TCTACGTGTCAGAAAGTCGCATTCTGCTGGGTGAT-ATGACGGAAAAGGCTAGCTCGTGC 533 consensus_7507#3 ------------------------------------------------------------ consensus_7507#1 TCTACGTGTCAGAAAGTCGCATTCTGCTGGGTGAT-ATGACGGAAAAGGCTAGCTCGTGC 452 consensus_7507#0 ACTACTCCGAACGGTGTTTTGCGCTACAGGACAATGATTTCAGCGGAGGGCATGCTGTGC 597 consensus_7507#2 AATGGTACTACCGCCGTTGCAAACCTTTCCGACAACGA--------TAAGCGGCTG---- 581 consensus_7507#3 ------------------------------------------------------------ consensus_7507#1 AATGGTACTACCGCCGTTGCAAACCTTTCCGACAACGA--------TAAGCGGCTG---- 500 consensus_7507#0 TGGAAACGTATTGCATTTTCACAGCATCGCGGGGCGGGGCTTGGTTTTAGCAGCTATGTT 657 consensus_7507#2 GCGGATGAGATCAAGCTGCTGGAAGCGATTCTGCTCGAGGTCAGTGATCAGTGCCAGGCC 641 consensus_7507#3 ------------------------------------------------------------ consensus_7507#1 GCGGATGAGATCAAGCTGCTGGAAGCGATTCTGCTCGAGGTCAGTGATCAGTGCCAGGCC 560 consensus_7507#0 GCGCAGGCAGCGAGCATAATGTAGACAAGTTTTC-CATAGTCTTCGTACGTTTCTCAACC 716 consensus_7507#2 AATCGTACCAAGCAGTTGCTGCTGAG---------------------------------- 667 consensus_7507#3 ------------------------------------------------------------ consensus_7507#1 AATCGTACCAAGCAGTTGCTGCTGAGTGCGGAAACACCTACCCGGTACGATGCCAAGCAG 620 consensus_7507#0 ATTTGTAGCAA-TACTATCGTTTATATCACTATTTCTTTTCGCTCTGTGATGGCAACGGG 775 consensus_7507#2 ------------------------------------------------------------ consensus_7507#3 ------------------------------------------------------------ consensus_7507#1 CTGTACCAAGTATGTGGCAGGGCAGCTTGGAACAGAAGTTGCCCGCGAT----------- 669 consensus_7507#0 GGACACGACCTCCGAGATTCATTGTCGCCTCTGCATTATTACACATTCTTTCTAAAACCT 835 consensus_7507#2 ------------------------------------------------------------ consensus_7507#3 ------------------------------------------------------------ consensus_7507#1 ------------------------------------------------------------ consensus_7507#0 GTAAACGTTTAAGCAATGCCAGCGCTATCCTTCGCTCGCAGCGTCCCACCAAGACCCGAA 895 consensus_7507#2 -------------- consensus_7507#3 -------------- consensus_7507#1 -------------- consensus_7507#0 AGGGTAAGGCTGGA 909 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||