These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7509#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1331 fasta sequence [CCGGGAGCTGCTGCTGGCGCACTACGGCGAAGATCACTTCGATCGCACGGATTGCCACGGTACGCTGATGATGCTGACCCGCTCGACCGAGGTGATTAGGCGCGAGCTGACGGCGTCGGAAAACCACAGCCTGCTGTGCGAAATCCAGCGCGACATCGACGGGTACGATGGGCTGGTGCAGCCGGACCGGAAGCTGATCCGGCAGGGCTGCCTACTGAAGCATTCCAAGCGCGGGCTGCAGCAGCGCATGTTCTTCCTGTTCTCCGACGTGCTGCTGTACGCGGTAAAGTCCCCGGTGACGCAGACGTTCAAGGTGCTCGGCCACGTGCCGGTCCGTTCGCTGCTGACGGAGAATGCGGAGCACAACGCGTTTGTGATATTTGGCGGGCAGCGGGCAATCACCGTGAGTGCGGGCACCACGGTCGAGAAGACGCTCTGGCTGGAGGAGCTGGCGAAGGCGGCCAACAGTCTGAAGTACAAACCCCAGACCCAGCTGCCCATTGTGTCGATCAAAACATGCACATCGTCTGAGGAAAATCTGGAAGCTTGCGGATTGAGCAGTGCGCTTGTGCCACCGGCCGCAGCCAGGCAGCCATCGCCTCGCAACAACACGGCCCTGCACGTGTGTTGGCATCGTGGCGTCACGATCTGTCTCGACGATCATCTTCGCTCGGGAAGGAATCAAATTTCGGGCTACTTGCTGCGAAAGTTTAAAAACAGCTCCGGGTGGCAGAAGCTGTGGGTCGTGCTGACATCGTTCTGTCTGTACTTCTACAAGAGCTACTCGGACGATGCGGCCCTTGCCAGCTTGCCGCTGCTCGGGTACACGGTAGGGCCTCCCGGCATTCAGGATGCGGTGCAGAAGGAGTACGTCTTTAAGCTTTCGTTCAAAAACCACACCTACTTCTTCCGCGCAGAGAGTGAGCACACATACAATCGGTGGATGGAGGTGTTGCGTAGCGCCACTCAAATTCAGGAATCCCGCTCATCGCCCACAATCAACTCGAACAATCTAATCAACAATAACGGTAGCAACGGAAACTAAGCAAACGAAGGCCATCGAAACAAGTAGTAGTGACCGTGAGCAAGGCGGAAAAGCTTCGACGGAGCTGCCGCACGCATTTCCCCC-TTGTGTATGTGTCCTCTAAAGCGTTTTTTACATCTGCAACACGCAAAGTGCATCCTTTAAACCGTACAATTGATATGATCAATCGTATTCG-TTTACTGTAAGTGTGTGACAGCTATTTTTATGTAAAACAATCCAAGATACTA-NAAAAAT----CCCCTTNCCCC-TATCCTAAACTGATCAGACCGTTCCCTCCGTCGTTCCGCTT] [+] EMBL BM642423 [CCGGGAGCTGCTGCTGGCGCACTACGGCGAAGATCACTTCGATCGCACGGATTGCCACGGTACGCTGATGATGCTGACCCGCTCGACCGAGGTGATTAGGCGCGAGCTGACGGCGTCGGAAAACCACAGCCTGCTGTGCGAAATCCAGCGCGACATCGACGGGTACGATGGGCTGGTGCAGCCGGACCGGAAGCTGATCCGGCAGGGCTGCCTACTGAAGCATTCCAAGCGCGGGCTGCAGCAGCGCATGTTCTTCCTGTTCTCCGACGTGCTGCTGTACGCGGTAAAGTCCCCGGTGACGCAGACGTTCAAGGTGCTCGGCCACGTGCCGGTCCGTTCGCTGCTGACGGAGAATGCGGAGCACAACGCGTTTGTGATATTTGGCGGGCAGCGGGCAATCACCGTGAGTGCGGGCACCACGGTCGAGAAGACGCTCTGGCTGGAGGAGCTGGCGAAGGCGGCCAACAGTCTGAAGTACAAACCCCAGACCCAGCTGCCCATTGTGTCGATCAAAACATGCACATCGTCTGAGGAAAATCTGGAAGCTTGCGGATTGAGCAGTGCGCTTGTGCCACCGGCCGCAGCCAGGCAGCCATCGCCTCGCAACAACACGGCCCTGCACGTGTGTTGGCATCGTGGCGTCACGATCTGTCTCGACGATCATCTTCGCTCGGGA ] [+] EMBL BM590675 [ ccgTCCTGTTCTCCGACGTGCTGCTGTACGCGGTAAAGTCCCCGGTGACGCAGACGTTCAAGGTGCTCGGCCACGTGCCGGTCCGTTCGCTGCTGACGGAGAATGCGGAGCACAACGCGTTTGTGATATTTGGCGGGCAGCGGGCAATCACCGTGAGTGCGGGCACCACGGTCGAGAAGACGCTCTGGCTGGAGGAGCTGGCGAAGGCGGCCAACAGTCTGAAGTACAAACCCCAGACCCAGCTGCCCATCGTGTCGATCAAAACATGCACATCGTCTGAGGAAAATCTGGAAGCTTGCGGACTGAGCAGTGCCCTTGTGCCACCGGCCGCAGCCAGGCAGCCATCGCCTCGCAACAACACGGCCCTGCACGTGTGTTGGCATCGTGGCGTCACGATCTGTCTCGACGATCATCTTCGCTCGGGAAGGAATCAAATTTCGGGCTACTTGCTGCGAAAGTTTAAAAACAGCTCCGGCTGGCAGAAGCTGTGGGTCGTGCTGACATCGTTCTGTCTGTACTTCTACAAGAGCTACTCGGACGATGCGGCCCTTGCCAGCTTGCCGCTGCTCGGGTACACGGTAGGGCCTCCCGGCATTCAGGATGCGGTGCAGAAGGAGTACGTCTTTAAGCTTTCGTTCAAAAACCACA ] [+] EMBL BX621905 [ CAAACCCCAGACCCAGCTGCCCATTGTGTCGATCAAAACATGCACATCGTCTGAGGAAAATCTGGAAGCTTGCGGATTGAGCAGTGCGCTTGTGCCACCGGCCGCAGCCAGGCAGCCATCGCCTCGCAACAACACGGCCCTGCACGTGTGTTGGCATCGTGGCGTCACGATCTGTCTCGACGATCATCTTCGCTCGGGAAGGAATCAAATTTCGGGCTACTTGCTGCGAAAGTTTAAAAACAGCTCCGGGTGGCAGAAGCTGTGGGTCGTGCTGACATCGTTCTGTCTGTACTTCTACAAGAGCTACTCGGACGATGCGGCCCTTGCCAGCTTGCCGCTGCTCGGGTACACGGTAGGGCCTCCCGGCATTCAGGATGCGGTGCAGAAGGAGTACGTCTTTAAGCTTTCGTTCAAAAACCACACCTACTTCTTCCGCGCAGAGAGTGAGCACACATACAATCGGTGGATGGAGGTGTTGCGTAGCGCCACTCAAATTCAGGAATCCCGCTCATCGCCCACAATCAACTCGAACAATCTAATCAACAATAACGGTAGCAACGGAAACTAAGCAAACGAAGGCCATCGAAACAAGTAGTAGTGACCGTGAGCAAGGCGGAAAAGCTTCGACGGAGCTGCCGCACGCATTTCCCCC TTGTGTATGTGTCCTCTAAAGCGTTTTTTACATCTGCAACACGCAAAGTGCATCCTTTAAACCGTACAATTGATATGATCNATCGTATTCGTTTTACTGNAAGTGNGTGACAGCTATTTTTATGTAAAACAATCCAAGATACTA NAAAAAT CCCCTTNCCCC TATCCTAAACTG ] [+] EMBL BM579785 [ ccgGCGCTTGTGCCACCGGCCGCAGCCAGGCAGCCATCGCCTCGCAACAACACGGCCCTGCACGTGTGTTGGCATCGTGGCGTCACGATCTGTCTCGACGATCATCTTCGCTCGGGAAGGAATCAAATTTCGGGCTACTTGCTGCGAAAGTTTAAAAACAGCTCCGGGTGGCAGAAGCTGTGGGTCGTGCTGACATCGTTCTGTCTGTACTTCTACAAGAGCTACTCGGACGATGCGGCCCTTGCCAGCTTGCCGCTGCTCGGGTACACGGTAGGGCCTCCCGGCATTCAGGATGCGGTGCAGAAGGAGTACGTCTTTAAGCTTTCGTTCAAAAACCACACCTACTTCTTCCGCGCAGAGAGTGAGCACACATACAATCGGTGGATGGAGGTGTTGCGTAGCGCCACTCAAATTCAGGAATCCCGCTCATCGCCCACAATCAACTCGAACAATCTAATCAACAATAACGGTAGCAACGGAAACTAAGCAAACGAAGGCCATCGAAACAAGTAGTAGTGACCGTGAGCAAGGCGGAAAAGCTTCGACGGAGCTGCCGCACGCATTTCCCCC TTGTGTATGTGTCCTCTAAAGCGTTTTTTACATCTGCAACACGCAAAGTGCATCCTTTAAACCGTACAATTGATATGATCAATCGTATTCG TTTACTGTAAGTGTGTGACAGCTATT ] [+] EMBL BM641113 [ ccgGCCTCGCAACAACACGGCCCTGCACGTGTGTTGGCATCGTGGCGTCACGATCTGTCTCGACGATCATCTTCGCTCGGGAAGGAATCAAATTTCGGGCTACTTGCTGCGAAAGTTTAAAAACAGCTCCGGGTGGCAGAAGCTGTGGGTCGTGCTGACATCGTTCTGTCTGTACTTCTACAAGAGCTACTCGGACGATGCGGCCCTTGCCAGCTTGCCGCTGCTCGGGTACACGGTAGGGCCTCCCGGCATTCAGGATGCGGTGCAGAAGGAGTACGTCTTTAAGCTTTCGTTCAAAAACCACACCTACTTCTTCCGCGCAGAGAGTGAGCACACATACAATCGGTGGATGGAGGTGTTGCGTAGCGCCACTCAAATTCAGGAATCCCGCTCATCGCCCACAATCAACTCGAACAATCTAATCAACAATAACGGTAGCAACGGAAACTAAGCAAACGAAGGCCATCGAAACAAGTAGTAGTGACCGTGAGCAAGGCGGAAAAGCTTCGACGGAGCTGCCGCACGCATTTCCCCC TTGTGTATGTGTCCTCTAAAGCGTTTTTTACATCTGCAACACGCAAAGTGCATCCTTTAAACCGTACAATTGATATGATCAATCGTATTCG TTTACTGT ] [+] EMBL BM614342 [ ccgCGACGATCATCTTCGCTCGGGAAGGAATCAAATTTCGGGCTACTTGCTGCGAAAGTTTAAAAACAGCTCCGGCTGGCAGAAGCTGTGGGTCGTGCTGACATCGTTCTGTCTGTACTTCTACAAGAGCTACTCGGACGATGCGGCCCTTGCCAGCTTGCCGCTGCTCGGGTACACGGTAGGGCCTCCCGGCATTCAGGATGCGGTGCAGAAGGAGTACGTCTTTAAGCTTTCGTTCAAAAACCACACCTACTTCTTCCGCGCAGAGAGTGAGCACACGTACAATCGGTGGATGGAGGTGTTGCGTAGCGCCACTCAAATTCAGGAATCCCGCTCATCGCCCACAATCAACTCGAACAATCTAATCAACAATAACGGTAGCAACGGAAACTAAGTAAACGAAGGCCATCGAAACAAGTAGTAGTGACCGTGAGCAAGGCGGAAAAGCTTCGACGGAGCTGGCGCACGCATTTCCCCCTTTGTGTATGTGCCCTCTAAAGCGTTTTTTACATCTGCAACACGCAAAGTGCATCCTTTAAACCGTACAATTGATATGATCAATCGTATTCG TTTACTGTAAGTGTGTGAAAGCTATTTTTATGTAAAACAATCCAAGATACTAGAAAAAATCCACCCCCTCCCCCCTTATCCTTATCTGATCAGACCGTTCCCTCCGTCGTTCCGCTT] consensusID : consensus_7509#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence [TCGCCTCGCAACAACACGGCCCTGCACGTGTGTTGGCATCGTGGCGTCACGATCTGTCTCGACGATCATCTTCGCTCGGGAAGGAATCAAATTTCGGGCTACTTGCTGCGAAAGTTTAAAAACAGCTCCGGGTGGCAGAAGCTGTGGGTCGTGCTGACATCGTTCTGTCTGTACTTCTACAAGAGCTACTCGGACGATGCGGCCCTTGCCAGCTTGCCGCTGCTCGGGTACACGGTAGGGCCTCCCGGCATTCAGGATGCGGTGCAGAAGGAGTACGTCTTTAAGCTTTCGTTCAAAAACCACACCTACTTCTTCCGCGCAGAGAGTGAGCAACTCGAACAATCTAATCAACAATAACGGTAGCAACGGAAACTAAGCAAACGAAGGCCATCGAAACAAGTAGTAGTGACCGTGAGCAAGGCGGAAAAGCTTCGACGGAGCTGCCGCACGCATTTCCCCCTTGTGTATGTGTCCTCTAAAGCGTTTTTTACATCTGCAACACGCAAAGTGCATCCTTTAAACCGTACAATTGATATGATCAATCGTATTCGTTTACTGTAAGTGTGTGACAGCTATTTTTA] [+] EMBL BX618779 [TCGCCTCGCAACAACACGGCCCTGCACGTGTGTTGGCATCGTGGCGTCACGATCTGTCTCGACGATCATCTTCGCTCGGGAAGGAATCAAATTTCGGGCTACTTGCTGCGAAAGTTTAAAAACAGCTCCGGGTGGCAGAAGCTGTGGGTCGTGCTGACATCGTTCTGTCTGTACTTCTACAAGAGCTACTCGGACGATGCGGCCCTTGCCAGCTTGCCGCTGCTCGGGTACACGGTAGGGCCTCCCGGCATTCAGGATGCGGTGCAGAAGGAGTACGTCTTTAAGCTTTCGTTCAAAAACCACACCTACTTCTTCCGCGCAGAGAGTGAGCAACTCGAACAATCTAATCAACAATAACGGTAGCAACGGAAACTAAGCAAACGAAGGCCATCGAAACAAGTAGTAGTGACCGTGAGCAAGGCGGAAAAGCTTCGACGGAGCTGCCGCACGCATTTCCCCCTTGTGTATGTGTCCTCTAAAGCGTTTTTTACATCTGCAACACGCAAAGTGCATCCTTTAAACCGTACAATTGATATGATCAATCGTATTCGTTTACTGTAAGTGTGTGACAGCTATTTTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7509#0 CCGGGAGCTGCTGCTGGCGCACTACGGCGAAGATCACTTCGATCGCACGGATTGCCACGG 60 consensus_7509#1 ------------------------------------------------------------ consensus_7509#0 TACGCTGATGATGCTGACCCGCTCGACCGAGGTGATTAGGCGCGAGCTGACGGCGTCGGA 120 consensus_7509#1 ------------------------------------------------------------ consensus_7509#0 AAACCACAGCCTGCTGTGCGAAATCCAGCGCGACATCGACGGGTACGATGGGCTGGTGCA 180 consensus_7509#1 ------------------------------------------------------------ consensus_7509#0 GCCGGACCGGAAGCTGATCCGGCAGGGCTGCCTACTGAAGCATTCCAAGCGCGGGCTGCA 240 consensus_7509#1 ------------------------------------------------------------ consensus_7509#0 GCAGCGCATGTTCTTCCTGTTCTCCGACGTGCTGCTGTACGCGGTAAAGTCCCCGGTGAC 300 consensus_7509#1 ------------------------------------------------------------ consensus_7509#0 GCAGACGTTCAAGGTGCTCGGCCACGTGCCGGTCCGTTCGCTGCTGACGGAGAATGCGGA 360 consensus_7509#1 ------------------------------------------------------------ consensus_7509#0 GCACAACGCGTTTGTGATATTTGGCGGGCAGCGGGCAATCACCGTGAGTGCGGGCACCAC 420 consensus_7509#1 ------------------------------------------------------------ consensus_7509#0 GGTCGAGAAGACGCTCTGGCTGGAGGAGCTGGCGAAGGCGGCCAACAGTCTGAAGTACAA 480 consensus_7509#1 ------------------------------------------------------------ consensus_7509#0 ACCCCAGACCCAGCTGCCCATTGTGTCGATCAAAACATGCACATCGTCTGAGGAAAATCT 540 consensus_7509#1 ------------------------------------------------------------ consensus_7509#0 GGAAGCTTGCGGATTGAGCAGTGCGCTTGTGCCACCGGCCGCAGCCAGGCAGCCATCGCC 600 consensus_7509#1 -------------------------------------------------------TCGCC 5 ***** consensus_7509#0 TCGCAACAACACGGCCCTGCACGTGTGTTGGCATCGTGGCGTCACGATCTGTCTCGACGA 660 consensus_7509#1 TCGCAACAACACGGCCCTGCACGTGTGTTGGCATCGTGGCGTCACGATCTGTCTCGACGA 65 ************************************************************ consensus_7509#0 TCATCTTCGCTCGGGAAGGAATCAAATTTCGGGCTACTTGCTGCGAAAGTTTAAAAACAG 720 consensus_7509#1 TCATCTTCGCTCGGGAAGGAATCAAATTTCGGGCTACTTGCTGCGAAAGTTTAAAAACAG 125 ************************************************************ consensus_7509#0 CTCCGGGTGGCAGAAGCTGTGGGTCGTGCTGACATCGTTCTGTCTGTACTTCTACAAGAG 780 consensus_7509#1 CTCCGGGTGGCAGAAGCTGTGGGTCGTGCTGACATCGTTCTGTCTGTACTTCTACAAGAG 185 ************************************************************ consensus_7509#0 CTACTCGGACGATGCGGCCCTTGCCAGCTTGCCGCTGCTCGGGTACACGGTAGGGCCTCC 840 consensus_7509#1 CTACTCGGACGATGCGGCCCTTGCCAGCTTGCCGCTGCTCGGGTACACGGTAGGGCCTCC 245 ************************************************************ consensus_7509#0 CGGCATTCAGGATGCGGTGCAGAAGGAGTACGTCTTTAAGCTTTCGTTCAAAAACCACAC 900 consensus_7509#1 CGGCATTCAGGATGCGGTGCAGAAGGAGTACGTCTTTAAGCTTTCGTTCAAAAACCACAC 305 ************************************************************ consensus_7509#0 CTACTTCTTCCGCGCAGAGAGTGAGCACACATACAATCGGTGGATGGAGGTGTTGCGTAG 960 consensus_7509#1 CTACTTCTTCCGCGCAGAGAGTGAGCA--------------------------------- 332 *************************** consensus_7509#0 CGCCACTCAAATTCAGGAATCCCGCTCATCGCCCACAATCAACTCGAACAATCTAATCAA 1020 consensus_7509#1 -----------------------------------------ACTCGAACAATCTAATCAA 351 ******************* consensus_7509#0 CAATAACGGTAGCAACGGAAACTAAGCAAACGAAGGCCATCGAAACAAGTAGTAGTGACC 1080 consensus_7509#1 CAATAACGGTAGCAACGGAAACTAAGCAAACGAAGGCCATCGAAACAAGTAGTAGTGACC 411 ************************************************************ consensus_7509#0 GTGAGCAAGGCGGAAAAGCTTCGACGGAGCTGCCGCACGCATTTCCCCCTTGTGTATGTG 1140 consensus_7509#1 GTGAGCAAGGCGGAAAAGCTTCGACGGAGCTGCCGCACGCATTTCCCCCTTGTGTATGTG 471 ************************************************************ consensus_7509#0 TCCTCTAAAGCGTTTTTTACATCTGCAACACGCAAAGTGCATCCTTTAAACCGTACAATT 1200 consensus_7509#1 TCCTCTAAAGCGTTTTTTACATCTGCAACACGCAAAGTGCATCCTTTAAACCGTACAATT 531 ************************************************************ consensus_7509#0 GATATGATCAATCGTATTCGTTTACTGTAAGTGTGTGACAGCTATTTTTATGTAAAACAA 1260 consensus_7509#1 GATATGATCAATCGTATTCGTTTACTGTAAGTGTGTGACAGCTATTTTTA---------- 581 ************************************************** consensus_7509#0 TCCAAGATACTANAAAAATCCCCTTNCCCCTATCCTAAACTGATCAGACCGTTCCCTCCG 1320 consensus_7509#1 ------------------------------------------------------------ consensus_7509#0 TCGTTCCGCTT 1331 consensus_7509#1 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||