These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7514#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 950 fasta sequence [CCGCTCGGAGTCGGATGCTAAAACGGTGCGCGGATCAGGAGATACCGGTGCGCACATACACACAAACGCCCCGCTGTGTTTGGCCCCACGGTACGGTGTTTACTAAACGCGTGGAACGAGGCCAAGCATTTGCTGGAGTTCGGTAGAGCATTCCGCCGCGAGGTGAAGCAAGTAAAGAGTGCAGTTTTGGAAGAGGCAGACGGTGCAGAGGCTGAGTGGTGAAGCTGATTCCGCGTCGGTGCGAGCATTTGGTCTAATCATCTACTTCACTTAATCGTTCCGGGCGTGTTTCGGTGACACAAGTGCCAGTGGTGACTCCAGCTCAACACCGTCCTCACCAGCAGCATCAGCGTCATCGTCGTTATCGTCGTCGTCGCCGTGCAACGATCCGGTCCATGCCGACAACAGCACCAGTGAGCCGGACCGAATCCACGACTATCTGAATCGATATCGCTTATCGTACGGTGTACCGGCGCGAAAAATAAGCCTCAAAAAAAGAATGGCCAAGGACGAGGAGGACGATCTGCTGCCCGACAAGGATGCGGCGAAGGGATTCTACGCCAAGTACGAGCCCAAGGAAATTCTCGGCAGAGGCATCAGCTCGACGGTACGGCGATGCATCGAGAAGGAAACGGGCAAGGAGTTTGCGGCAAAAGATCATCGATCTCGGCGCGGCAGAGACGGGCGATTCCAACCACATGCTGGAAGCAACCCGGCAGGAAATTCAAATCCTGCGCCAAGTGATGGGACACAAGTTTATCATCGAGCTGCAGGATGTGTTCGAATCGGA---TGCGTTCATTTTCCTCGTGTTCGAACTGTGCCGGCAGGGCGAGCTGTTCGATTATCTCACCTCGGTGGTGACACTGTCCGAGAAAAAGTCCCGCTACATCATGCGCCAGATATTCGAGGGCGTCGACTACATCCATTCGAAGAACATTGTGCATCGCGAT] [+] EMBL BM639734 [CCGCTCGGAGTCGGATGCTAAAACGGTGCGCGGATCAGGAGATACCGGTGCGCACATACACACAAACGCCCCGCTGTGTTTGGCCCCACGGTACGGTGTTTACTAAACGCGTGGAACGAGGCCAAGCATTTGCTGGAGTTCGGTAGAGCATTCCGCCGCGAGGTGAAGCAAGTAAAGAGTGCAGTTTTGGAAGAGGCAGACGGTGCAGAGGCTGAGTGGTGAAGCTGATTCCGCGTCGGTGCGAGCATTTGGTCTAATCATCTACTTCACTTAATCGTTCCGGGCGTGTTTCGGTGACACAAGTGCCAGTGGTGACTCCAGCTCAACACCGTCCTCACCAGCAGCATCAGCGTCATCGTCGTTATCGTCGTCGTCGCCGTGCAACGATCCGGTCCATGCCGACAACAGCACCAGTGAGCCGGACCGAATCCACGACTATCTGAATCGATATCGCTTATCGTACGGTGTACCGGCGCGAAAAATAAGCCTCAAAAAAAGAATGGCCAAGGACGAGGAGGACGATCTGCTGCCCGACAAGGATGCGGCGAAGGGATTCTACGCCAAGTACGAGCCCAAGGAAATTCTCGGCAGAGGCATCAGCTCGACGGTACGGCGATGCATCGAGAAGGAAACGGGCAAGGAGTTTGCGGCAAAAGATCATCGATCTCGGCGCGGCAGAGACGGGCGATTCCAACCACATGCT ] [+] EMBL BM648308 [ CTGTGTTTGGCCCCACGGTACGGTGTTTACTAAACGCGTGGAACTAGGTCAAGCATTTGCTGGAGTTCGGTAGAGCATTCCGCCGCGAGGTGAAGCAAGTAAAGAGTGCAGTTTTGGAAGAGGCAGACGGTGCAGAGGCTGAGTGGTGAAGCTGATTCCGCGTCGGTGCGAGCATTTGGTCTAATCATCTACTTCACTTAATCGTTCCGGGCGTGTTTCGGTGACGCAAGTGCCAGTGGTGACTCCAGCTCAACACCGTCCTCACCAGCATCATCAGCGTCATCGTCGTTATCGTCGTCGTCGCCGTGCAACGATCCGGTCCATGCCGACGACAGCACCAGTGAGCCGGACCGAATCCACGACTATCTGAATCGATATCGCTTA ] [+] EMBL BM648856 [ ccGGCCAAGCATTTGCTGGAGTTCGGTAGAGCATTCCGCCGCGAGGTGAAGCAAGTAAAGAGTGCAGTTTTGGAAGAGGCAGACGGTGCAGAGGCTGAGTGGTGAAGCTGATTCCGCGTCGGTGCGAGCATTTGGTCTAATCATCTACTTCACTTAATCGTTCCGGGCGTGTTTCGGTGACACAAGTGCCAGTGGTGACTCCAGCTCAACACCGTCCTCACCAGCAGCATCAGCGTCATCGTCGTTATCGTCGTCGTCGCCGTGCAACGATCCGGTCCATGCCGACAACAGCACCAGTGAGCCGGACCGAATCCACGACTATCTGAATCGATATCGCTTATCGTACGGTGTACCGGCGCGAAAAATAAGCCTCAAAAAAAGAATGGCCAAGGACGAGGAGGACGATCTGCTGCCCGACAAGGATGCGGCGAAGGGATTCTACGCCAAGTACGAGCCCAAGGAAATTCTCGGCAGAGGCATCAGCTCGACGGTACGGCGATGCATCGAGAAGGAAACGGGCAAGGAGTTTGCGGC AAAGATCATCGATCTCGGCGCGGCAGAGACGGGCGATTCCAACCACATGCTGGAAGCAACCCGGCAGGAAATTCAAATCCTGCGCCAAGTGATGGGACACAAGTTTATCATCGAGCTGCAGGATGTGTTCGAATCGGA TGCGTT ] [+] EMBL AL696114 [ cgaggnngTTATCATCGAGCTGCAGGATGTGTTCGAATCGGAAATTGCGTTCATTTTCCTCGTGTTCGAACTGTGCCGGCAGGGCGAGCTGTTCGATTATCTCACCTCGGTGGTGACACTGTCCGAGAAAAAGTCCCGCTACATCATGCGCCAGATATTCGAGGGCGTCGACTACATCCATTCGAAGAACATTGTGCATCGCGAT] consensusID : consensus_7514#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 869 fasta sequence [CCGCGGATGCTAAAACGGTGCGCGGATCGGGAGATACCGGTGCGCACATACACACAAACGCCCCGCTGTGTTTGGCCCCACGGTACGGTGTTTACTAAACGCGTGGAACGAGGCCAAGCATTTGCTGGAGTTCGGTAGAGCATTCCGCCGCGAGGTGAAGCAAGTAAAGAGTGCAGTTTTGGAAGAGGCAGACGGTGCAGAGGCTGAGTGGTGAAGCTGATTCCGCGTCGGTGCGAGCATTTGGTCTAATCATCTACTTCACTTAATCGTTCCGGGCGTGTTTCGGTGACACAAGTGCCAGTGGTGACTCCAGCTCAACACCGTCCTCGCCAGCAGCATCAGCGTCGTCGTCGTCGTCGTGCAACGATCCGGTCCATGCCGACAACAGCACCAGTGAGCCGGACCGAATCCACGACTATCTGAATCGATATCGCTTATCGTACGGTGTACCGGCGCGAAAAATAAGCCTCAAAAAAAGAATGGCCAAGGACGAGGAGGACGATCTGCTGCCCGACAAGGATGCGGCGAAGGGATTCTACGCCAAGTACGAGCCCAAGGAAATTCTCGGCAGAGGCATCAGCTCGACGGTACGGCGATGCATCGAGAAGGAAACGGGCAAGGAGTTTGCGGCAAAGATCATCGATCTCGGCGCGGCAGAGACGGGCGATTCCAACCACATGCTGGAAGCAACCCGGCAGGAAATTCAAATCCTGCGCCAAGTGATGGGACACAAGTTTATCATCGAGCTGCAGGATGTGTTCGAATCGGATGCGTTCATTTTCCTCGTGTTCGAACTGTGCCGGCAGGGCGAGCTGTTCGATTATCTCACCTCGGTGGTGACACTGTCCGAGAAAAAGTCCCGCTACATC] [+] EMBL BM596411 [CCGCGGATGCTAAAACGGTGCGCGGATCGGGAGATACCGGTGCGCACATACACACAAACGCCCCGCTGTGTTTGGCCCCACGGTACGGTGTTTACTAAACGCGTGGAACGAGGCCAAGCATTTGCTGGAGTTCGGTAGAGCATTCCGCCGCGAGGTGAAGCAAGTAAAGAGTGCAGTTTTGGAAGAGGCAGACGGTGCAGAGGCTGAGTGGTGAAGCTGATTCCGCGTCGGTGCGAGCATTTGGTCTAATCATCTACTTCACTTAATCGTTCCGGGCGTGTTTCGGTGACACAAGTGCCAGTGGTGACTCCAGCTCAACACCGTCCTCGCCAGCAGCATCAGCGTCGTCGTCGTCGTCGTGCAACGATCCGGTCCATGCCGACAACAGCACCAGTGAGCCGGACCGAATCCACGACTATCTGAATCGATATCGCTTATCGTACGGTGTACCGGCGCGAAAAATAAGCCTCAAAAAAAGAATGGCCAAGGACGAGGAGGACGATCTGCTGCCCGACAAGGATGCGGCGAAGGGATTCTACGCCAAGTACGAGCCCAAGGAAATTCTCGGCAGAGGCATCAGCTCGACGGTACGGCGATGCATCGAGAAGGAAACGGGCAAGGAGTTTGCGGCAAAGATCATCGATCTCGGCGCGGCAGAGACGGGCGATTCCAACCACATGCTGGAAGCA ] [+] EMBL BM637215 [ ccgGTGGTGAAGCTGATTCCGCGTCGGTGCGAGCATTTGGTCTAATCATCTACTTCACTTAATCGTTCCGGGCGTGTTTCGGTGACACAAGTGCCAGTGGTGACTCCAGCTCAACACCGTCCTCGCCAGCAGCATCAGCGTCGTCGTCGTCGTCGTGCAACGATCCGGTCCATGCCGACAACAGCACCAGTGAGCCGGACCGAATCCACGACTATCTGAATCGATATCGCTTATCGTACGGTGTACCGGCGCGAAAAATAAGCCTCAAAAAAAGAATGGCCAAGGACGAGGAGGACGATCTGCTGCCCGACAAGGATGCGGCGAAGGGATTCTACGCCAAGTACGAGCCCAAGGAAATTCTCGGCAGAGGCATCAGCTCGACGGTACGGCGATGCATCGAGAAGGAAACGGGCAAGGAGTTTGCGGCAAAGATCATCGATCTCGGCGCGGCAGAGACGGGCGATTCCAACCACATGCTGGAAGCAACCCGGCAGGAAATTCAAATCCTGCGCCAAGTGATGGGACACAAGTTTATCATCGAGCTGCAGGATGTGTTCGAATCGGATGCGTTCATTTTCCTCGTGTTCGAACTGTGCCGGCAGGGCGAGCTGTTCGATTATCTCACCTCGGTGGTGACACTGTCCGAGAAAAAGTCCCGCTACATC] consensusID : consensus_7514#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 650 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCTCAGCTCGGTCGGTGCGAGCATTTGGTCTAATCATCTACTTCACTTAATCGTTCCGGGCGTGTTTCGGTGACACAAGTGCCAGTGGTGACTCCAGCTCAACCTCGCTAGCAGCATCAGCGTCATCGTCGTTATCGTCGTCGTCGCCGTGCAACGATCCGGTCCATGCCGACAACAGCACCAGTGAGCCGGACCGAATCCACGACTATCTGAATCGATATCGCTTATCGTACGGTGTACCGGCGCGAAAAATAAGCCTCAAAAAAAGAATGGCCAAGGACGAGGAGGACGATCTGCTGCCCGACAAGGATGCGGCGAAGGGATTCTACGCCAAGTACGAGCCCAAGGAAATTCTCGGCAGAGGCATCAGCTCGACGGTACGGCGATGCATCGAGAAGGAAACGGGCAAGGAGTTTGCGGCAAAGATCATCGATCTCGGCGCGGCAGAGACGGGCGATTCCAACCACATGCTGGAAGCAACCCGGCAGGAAATTCAAATCCTGCGCCAAGTGATGGGACATAAGTTTATCATCGAGCTGCAGGATGTGTTCGAATCGGATGCGTTCATTTTCCTCGTGTTCGAACTGT] [+] EMBL BM578383 [CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCTCAGCTCGGTCGGTGCGAGCATTTGGTCTAATCATCTACTTCACTTAATCGTTCCGGGCGTGTTTCGGTGACACAAGTGCCAGTGGTGACTCCAGCTCAACCTCGCTAGCAGCATCAGCGTCATCGTCGTTATCGTCGTCGTCGCCGTGCAACGATCCGGTCCATGCCGACAACAGCACCAGTGAGCCGGACCGAATCCACGACTATCTGAATCGATATCGCTTATCGTACGGTGTACCGGCGCGAAAAATAAGCCTCAAAAAAAGAATGGCCAAGGACGAGGAGGACGATCTGCTGCCCGACAAGGATGCGGCGAAGGGATTCTACGCCAAGTACGAGCCCAAGGAAATTCTCGGCAGAGGCATCAGCTCGACGGTACGGCGATGCATCGAGAAGGAAACGGGCAAGGAGTTTGCGGCAAAGATCATCGATCTCGGCGCGGCAGAGACGGGCGATTCCAACCACATGCTGGAAGCAACCCGGCAGGAAATTCAAATCCTGCGCCAAGTGATGGGACATAAGTTTATCATCGAGCTGCAGGATGTGTTCGAATCGGATGCGTTCATTTTCCTCGTGTTCGAACTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7514#0 CCGCTCGGAGTCGGATGCTAAAACGGTGCGCGGATCAGGAGATACCGGTGCGCACATACA 60 consensus_7514#1 --------CCGCGGATGCTAAAACGGTGCGCGGATCGGGAGATACCGGTGCGCACATACA 52 consensus_7514#2 ------------------------------------------------------------ consensus_7514#0 CACAAACGCCCCGCTGTGTTTGGCCCCACGGTACGGTGTTTACTAAACGCGTGGAACGAG 120 consensus_7514#1 CACAAACGCCCCGCTGTGTTTGGCCCCACGGTACGGTGTTTACTAAACGCGTGGAACGAG 112 consensus_7514#2 ------------------------------------------------------------ consensus_7514#0 GCCAAGCATTTGCTGGAGTTCGGTAGAGCATTCCGCCGCGAGGTGAAGCAAGTAAAGAGT 180 consensus_7514#1 GCCAAGCATTTGCTGGAGTTCGGTAGAGCATTCCGCCGCGAGGTGAAGCAAGTAAAGAGT 172 consensus_7514#2 -----------------------------------CCGCG----GACGCGTG-GGCGGAC 20 ***** ** ** * * consensus_7514#0 GCAGTTTTGGAAGAGGCAGACGGTGCAGAGGCTGAGTGGTGAAGCTGATTCCGCGTCGGT 240 consensus_7514#1 GCAGTTTTGGAAGAGGCAGACGGTGCAGAGGCTGAGTGGTGAAGCTGATTCCGCGTCGGT 232 consensus_7514#2 GCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGG-GCTCAGCTCG-GTCGGT 78 ** *** * * * * ** *** ** *** *** * ** ****** consensus_7514#0 GCGAGCATTTGGTCTAATCATCTACTTCACTTAATCGTTCCGGGCGTGTTTCGGTGACAC 300 consensus_7514#1 GCGAGCATTTGGTCTAATCATCTACTTCACTTAATCGTTCCGGGCGTGTTTCGGTGACAC 292 consensus_7514#2 GCGAGCATTTGGTCTAATCATCTACTTCACTTAATCGTTCCGGGCGTGTTTCGGTGACAC 138 ************************************************************ consensus_7514#0 AAGTGCCAGTGGTGACTCCAGCTCAACACCGTCCTCACCAGCAGCATCAGCGTCATCGTC 360 consensus_7514#1 AAGTGCCAGTGGTGACTCCAGCTCAACACCGTCCTCGCCAGCAGCATCAGCGTC------ 346 consensus_7514#2 AAGTGCCAGTGGTGACTCCAGCTCAAC------CTCGCTAGCAGCATCAGCGTCATCGTC 192 *************************** *** * *************** consensus_7514#0 GTTATCGTCGTCGTCGCCGTGCAACGATCCGGTCCATGCCGACAACAGCACCAGTGAGCC 420 consensus_7514#1 ------GTCGTCGTCGTCGTGCAACGATCCGGTCCATGCCGACAACAGCACCAGTGAGCC 400 consensus_7514#2 GTTATCGTCGTCGTCGCCGTGCAACGATCCGGTCCATGCCGACAACAGCACCAGTGAGCC 252 ********** ******************************************* consensus_7514#0 GGACCGAATCCACGACTATCTGAATCGATATCGCTTATCGTACGGTGTACCGGCGCGAAA 480 consensus_7514#1 GGACCGAATCCACGACTATCTGAATCGATATCGCTTATCGTACGGTGTACCGGCGCGAAA 460 consensus_7514#2 GGACCGAATCCACGACTATCTGAATCGATATCGCTTATCGTACGGTGTACCGGCGCGAAA 312 ************************************************************ consensus_7514#0 AATAAGCCTCAAAAAAAGAATGGCCAAGGACGAGGAGGACGATCTGCTGCCCGACAAGGA 540 consensus_7514#1 AATAAGCCTCAAAAAAAGAATGGCCAAGGACGAGGAGGACGATCTGCTGCCCGACAAGGA 520 consensus_7514#2 AATAAGCCTCAAAAAAAGAATGGCCAAGGACGAGGAGGACGATCTGCTGCCCGACAAGGA 372 ************************************************************ consensus_7514#0 TGCGGCGAAGGGATTCTACGCCAAGTACGAGCCCAAGGAAATTCTCGGCAGAGGCATCAG 600 consensus_7514#1 TGCGGCGAAGGGATTCTACGCCAAGTACGAGCCCAAGGAAATTCTCGGCAGAGGCATCAG 580 consensus_7514#2 TGCGGCGAAGGGATTCTACGCCAAGTACGAGCCCAAGGAAATTCTCGGCAGAGGCATCAG 432 ************************************************************ consensus_7514#0 CTCGACGGTACGGCGATGCATCGAGAAGGAAACGGGCAAGGAGTTTGCGGCAAAAGATCA 660 consensus_7514#1 CTCGACGGTACGGCGATGCATCGAGAAGGAAACGGGCAAGGAGTTTGCGGCAAA-GATCA 639 consensus_7514#2 CTCGACGGTACGGCGATGCATCGAGAAGGAAACGGGCAAGGAGTTTGCGGCAAA-GATCA 491 ****************************************************** ***** consensus_7514#0 TCGATCTCGGCGCGGCAGAGACGGGCGATTCCAACCACATGCTGGAAGCAACCCGGCAGG 720 consensus_7514#1 TCGATCTCGGCGCGGCAGAGACGGGCGATTCCAACCACATGCTGGAAGCAACCCGGCAGG 699 consensus_7514#2 TCGATCTCGGCGCGGCAGAGACGGGCGATTCCAACCACATGCTGGAAGCAACCCGGCAGG 551 ************************************************************ consensus_7514#0 AAATTCAAATCCTGCGCCAAGTGATGGGACACAAGTTTATCATCGAGCTGCAGGATGTGT 780 consensus_7514#1 AAATTCAAATCCTGCGCCAAGTGATGGGACACAAGTTTATCATCGAGCTGCAGGATGTGT 759 consensus_7514#2 AAATTCAAATCCTGCGCCAAGTGATGGGACATAAGTTTATCATCGAGCTGCAGGATGTGT 611 ******************************* **************************** consensus_7514#0 TCGAATCGGATGCGTTCATTTTCCTCGTGTTCGAACTGTGCCGGCAGGGCGAGCTGTTCG 840 consensus_7514#1 TCGAATCGGATGCGTTCATTTTCCTCGTGTTCGAACTGTGCCGGCAGGGCGAGCTGTTCG 819 consensus_7514#2 TCGAATCGGATGCGTTCATTTTCCTCGTGTTCGAACTGT--------------------- 650 *************************************** consensus_7514#0 ATTATCTCACCTCGGTGGTGACACTGTCCGAGAAAAAGTCCCGCTACATCATGCGCCAGA 900 consensus_7514#1 ATTATCTCACCTCGGTGGTGACACTGTCCGAGAAAAAGTCCCGCTACATC---------- 869 consensus_7514#2 ------------------------------------------------------------ consensus_7514#0 TATTCGAGGGCGTCGACTACATCCATTCGAAGAACATTGTGCATCGCGAT 950 consensus_7514#1 -------------------------------------------------- consensus_7514#2 -------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||