These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7518#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1050 fasta sequence [TTTGTAGTGAGAAAATTTATTCATCACAGTTAAGCGTGGTAGTGTATTGTACAGTTGACCTTGCGTTCTCTTACGAAGAACCGTGTGGAACGTGTTTGCTCCCGGTGTGGCTATCCGCGCCATACGAACACCACGTTTGCGATGGTGAACGCGTACAGTGCAATCATTTGTACCATCAGTGTAGTTTTCCGCCAGCGTGAAAACGATGCGTCCTTATTTACGTCCAATTCGCCTCCCTTCCGTCTGGTAAGATATTCGAGAACGTTGAAAGCTACATGGGCCAGCACGTGAATGCCCACTGCACCGGCAAGCAGGCCATACATCACCGAGGATATGTGGGCCGGTTCCAGTCCGATTCCCAGGAACATGTTCGTTACTGCCAGGATGTAGGCAGCATGGCCCAGGAGAGTGTGCAGGATTCTAATCGCGGACTGTGCCGGCTGCTGGCTCGGTCTCATTAGTCCCAGGATGGGCTGGATGAACACGAGGGCGAACGTCGCCAGACCGACGATGCTGTGCGCGTGTGCCTCAAATCCCCGTACATCGACAAAAATGCACACGATGGCGGCGCATGTCAGTATCCAGCTGGCTATCATGTAAATCCGATGGTAAAAATTCCACACCGGCACTCCAAAGTACCGACGGGTGGTCCATGTTGTTTTGAAATACCTTGCAACGGTGTTTCCGAGGGAATTGAAGAACAGCCAAGCAACTACCATGAGCGTACCGTGCAGTCGCAACAGCACCGAGGGATGGTCATGGTCGTGGTCGTGGTCGTCGTCATGGTCGTGATCGTGTTCGTGATCTGTCATTGTGTGTATGTTTTCTTCTTCTGATCCTTCTGCTCTACACTAGACCTTCTCGGACCTTCTGCTGCTCCACACTGACGGACCGGTATGGTTTGTACAGCACTACACCACCGTCGGCAAGCCGAAACGGATCCACCACCTCCGGACCTCCTCTGCAAAACACACACACACACACACGTGCTCCCGTTCGTTCCCAACAGACGGTCGGCCCGGTTCG-CGAAGTGGGCGGACGCGTGGGCGG] [+] EMBL CNS08PSP [TTTGTAGTGAGAAAATTTATTCATCACAGTTAAGCGTGGTAGTGTATTGTACAGTTGACCTTGCGTTCTCTTACGAAGAACCGTGTGGAACGTGTTTGCTCCCGGTGTGGCTATCCGCGCCATACGAACACCACGTTTGCGATGGTGAACGCGTACAGTGCAATCATTTGTACCATCAGTGTAGTTTTCCGCCAGCGTGAAGACGATGCGTCCTTATTTACGTCCAATTCGCCTCCCTTCCGTCTGGTAAGATATTCGAGAACGTTGAAAGCTACATGGGCCAGCACGTGAATGCCCACTGCACCGGCAAGCAGGCCATACATCACCGAGGATATGTGGGCCGGTTCCAGTCCGATTCCCAGGAACATGTTCGTTACTGCCAGGATGTAGGCAGCATGGCCCAGGAGAGTGTGCAGGATTCTAATCGCGGACTGTGCCGGCTGCTGGCTCGGTCTCATTAGTCCCAGGATGGGCTGGATGAACACGAGGGCGGACGTCGCCAGAACGACTATtg ] [+] EMBL CNS08EWE [ gtacaAAAATGTATTCATCACAGTTAAGCGTGGTAGTGTATTGTACAGTTGACCTTGCGTTCTCTTACGAAGAACCGTGTGGAACGTGTTTGCTCCCAGTGTGGCTATCCGCGCCATACGAACACCACGTTTGCGATGGTGAACGCGTACAGTGCAATCATTTGTACCATCAGTGTAGTTTTCCGCCAGCGTGAAAACGATGCGTCCTTATTTACGTCCAATTCGCCTCCCTTCCGTCTGGTAAGATATTCGAGAACGTTGAAAGCTACATGGGCCAGCACGTGAATGCCCACTGCACCGGCAAGCAGGCCATACATCACCGAGGATATGTGGGCCGGTTCCAGTCCGATTCCCAGGAACATGTTCGTTACTGCCAGGATGTAGG AGCATGGCCCAGGAGAGTGTGCAGGATTCTAATCGCGGACTGTGCCGGCTGCTGGCTCGGTCTCATTAGTCCCAGGATGGGCTGGATGAACACGAGGGCGAACGTCGCCAGACCGACGATGCTGTGCGCGTGTGCCTCAAATCCCCGTACATCGACAAAAATGCACACGATGGCGGCGCATGTCAGTATCCAGCTGGCTATCATGTAAATCCGATGGTAAAAATTCCACACCGGCACTCCAAAGTACCGACGGGTGGTCCATGTTGTTTTGAAATACCTTGCAACGGTGTTTCCGAGGGAATTGAAGAACAGCCAAGCAACTACCATGAGCGTACCGTGCAGTCGCAACAGCACCGAGGGATGGTCATGGTCGTGGTCGTGGTCGTCGTCATGGTCGTGATCGTGTTCGTGATCTGTCATTGTGTGTATGTTTTCTTCTTCTGATCCTTCTGCTCTACACTAGACCTTCTCGGACCTTCTGCTGCTCCACACTGACGGACCGGTATGGT ] [-] EMBL CNS08EWD [ GAACACCACGTTTGCGATGGTGAACGCGTACAGTGCAATCATTTGTACCATCAGTGTAGTTTTCCGCCAGCGTGAAAACGATGCGTCCTTATTTACGTCCAATTCGCCTCCCTTCCGTCTGGTAAGATATTCGAGAACGTTGAAAGCTACATGGGCCAGCACGTGAATGCCCACTGCACCGGCAAGCAGGCCATACATCACCGAGGATATGTGGGCCGGTTCCAGTCCGATTCCCAGGAACATGTTCGTTACTGCCAGGATGTAGGCAGCATGGCCCAGGAGAGTGTGCAGGATTCTAATCGCGGACTGTGCCGGCTGCTGGCTCGGTCTCATTAGTCCCAGGATGGGCTGGATGAACACGAGGGCGAACGTCGCCAGACCGACGATGCTGTGCGCGTGTGCCTCAAATCCCCGTACATCGACAAAAATGCACACGATGGCGGCGCATGTCAGTATCCAGCTGGCTATCATGTAAATCCGATGGTAAAAATTCCACACCGGCACTCCAAAGTACCGACGGGTGGTCCATGTTGTTTTGAAATACCTTGCAACGGTGTTTCCGAGGGAATTGAAGAACAGCCAAGCAACTACCATGAGCGTACCGTGCAGTCGCAACAGCACCGAGGGATGGTCATGGTCGTGGTCGTGGTCGTCGTCATGGTCGTGATCGTGTTCGTGATCTGTCATTGTGTGTATGTTTTCTTCTTCTGATCCTTCTGCTCTACACTAGACCTTCTCGGACCTTCTGCTGCTCCACACTGACGGACCGGTATGGTTTGTACAGCACTACACCACCGTCGGCAAGCCGAAACGGATCCACCA CTCCGGACCTCCTCTGCAAAACACACACACACACACACGTGCTCCCGTTCGTTCCCAACAGACGGTCGGCCC ] [-] EMBL CNS08PSO [ GGGCCGGTTCCAGTCCGATTCCCAGGAACATGTTCGTTACTGCCAGGATGTAGGCAGCATGGCCCAGGAGAGTGTGCAGGTTTCTAATCGCGGACTGTGCCGGCTGCTGGCTCGGTCTCATTAGTCCCAGGATGGGCTGGATGAACACGAGGGCGGACGTCGCCAGACCGACGATGCTGTGCGCGTGTGCCTCAAATCCCCGTACATCGACAAAAATGCACACGATGGCGGCGCATGTCAGTATCCAGCTGGCTATCATGTAAATCCGATGGTAAAAATTCCACACCGGCACTCCAAAGTACCGACGGGTGGTCCATGTTGTTTTGAAATACCTTGCAACGGTGTTTCCGAGGGAATTGAAGAACAGCCAAGCAACTATCATGAGCGTACCGTGCAGTCGCAACAGCACCGAGGGATGGTCATGGTCGTGGTCGTGGTCGTCGTCATGGTCGTGATCGTGTTCGTGATCTGTCATTGTGTGTATGTTTTCTTCTTCTGATCCTTCTGCTCTACACTAGACCTTCTCGGACCTTCTGCTGCTCCACACTGACGGACCGGTATGGTTTGTACAGCACTACACCACCGTCGGCAAGCCGAAACGGATCCACCACCTCCGGACCTCCTCTGCAAAACACACACACACACACACGTGCTCCCGTTCGTTCCCAACAGACGGTCGGCCCGGTTCG CGAA ] [-] EMBL BM579791 [ CAGGATGTAGGCAGCATGGCCCAGGAGAGTGTGCAGGATTCTAATCGCGGACTGTGCCGGCTGCTGGCTCGGTCTCATTAGTCCCAGGATGGGCTGGATGAACACGAGGGCAAACGTCGCCAGACCGACGATGCTGTGCGCGTGTGCCTCAAATCCCCGCACATCGACAAAAATGCACACAATGGCGGCGCATGTCAGTATCCAGCTGGCCATCATGTAAATCCGATGGTAAAAATTCCACACCGGCACTCCAAAGTACCGACGGGTGGTCCATGTTGTTTTGAAATACCTTGCAACGGTGTTTCCGAGGGAATTGAAGAACAGCCAAGCAACTACCATGAGCGTACCGTGCAGCCGCAACAGCACCGAGGGATGGTCATGGTCGTGGTCGTGGTCGTCGTCATGGTCGTGATCGTGTTCGTGATCTGTCATTGTGTGTATGTTTTCTTCTTCTGATCCTTCTGCTCTACACTAGACCTTCTCGGACCTTCTGCTGCTCCACACTGACGGACCGGTATGGTTTGTACAGCACTACACCACCGTCGGCAAGCCGAAACGGATCCACCACCTCCGGACCTCCTCTGCAAA ACACACACACACACACGTGCTCCCGTTCGTTCCCAACAGACGGTCGGCCCGGTCGGACG CGTGGGCGGACGCGTGGGCGG] [-] EMBL BX623527 [ ATTAGTCCCAGGATGGGCTGGATGAACACGAGGGCGAACGTCGCCAGACCGACGATGCTGTGCGCGTGTGCCTCAAATCCCAGTACATCGACAAAAATGCACACGATGGCGGCGCATGTCAGTATCCAGCTGGCTATCATGTAAATCCGATGGTAAAAATTCCACACCGGCACTCCAAAGTACCGACGGGTGGTCCATGTTGTTTTGAAATACCTTGCAACGGTGTTTCCGAGGGAATTGAAGAACAGCCAAGCAACTACCATGAGCGTACCGTGCAGTCGCAACAGCACCGAGGGATGGTCATGGTCGTGGTCGTGGTCGTCGTCATGGTCGTGATCGTGTTCGTGATCTGTCATNGTGTGTATGTTTTCTTCTTCTGATCCTTCTNCTATACACTAGACCTTCTNGGACCTTCTGNTGCTCCACACTGACGGACCGGTATGGTTTGTACAGCACTACACCACCGTCGGCAAGCCGAAACGGATCCACCACCTCCGGACCTCCTCTGCAAAACACACACACACACACACGTGCTCCCGTTCGTTCCCAACAGACGGTCGGC ] consensusID : consensus_7518#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGATCGGGCGGACCGTGCACACAAGTTCCTATTGCCGAGGCGATGGTTAACTATCGCGATGAAGACTCTTGTCAAATATTTGTACCGTTTGTTAGTGACGTAAGAATTGGCTGTTTAGAAGGGCCGCAGGTGTCGCTTGATCTCGACGAATCGTTCACGTACGCTTCGCAGGGCAGTGCCGACCGGATGCTGTCCAGTTCGCCGCCCCAGAGCGGTCGCACCTCGCCGCCCGCTTCGCAAACACCGAGCGCCATCGCCCAGCTGCAGCAGAAAGATCTGCAGCAGCAGCAGCTGCTGCAGCAATCGTCCTCCTCGTCCTCCTCGCAGGTGCAGGAGTCGCTCGAGCTGCAGGTTGACTATTGGCCGCTGGCTCGGCCCAACTTCGACCCGAAGGAGAAATTGCTCGGCAAGGGCCAGGACCCGTCCGGCAAGAACAGTATTAAGAGCACGTTCCGGCATTTGCAGGTGTGGCGACTACCGCAAGCTCCAAGCTTTGGCGAGTTTACCAACGGCTTAACGCTGAGCTTTGCAACCAAGGAGAAAAAGCAAAAAATAATGAGATTAGGCAAAAAGAAGGAGAAAGATCGCGATGCTGAAAAAGGAGCAGTGCGTTCGAAGGGGTGGCCCGGTTA] [+] EMBL BM593904 [CCGCCCACGCGTCCGCCCACGCGTCCGATCGGGCGGACCGTGCACACAAGTTCCTATTGCCGAGGCGATGGTTAACTATCGCGATGAAGACTCTTGTCAAATATTTGTACCGTTTGTTAGTGACGTAAGAATTGGCTGTTTAGAAGGGCCGCAGGTGTCGCTTGATCTCGACGAATCGTTCACGTACGCTTCGCAGGGCAGTGCCGACCGGATGCTGTCCAGTTCGCCGCCCCAGAGCGGTCGCACCTCGCCGCCCGCTTCGCAAACACCGAGCGCCATCGCCCAGCTGCAGCAGAAAGATCTGCAGCAGCAGCAGCTGCTGCAGCAATCGTCCTCCTCGTCCTCCTCGCAGGTGCAGGAGTCGCTCGAGCTGCAGGTTGACTATTGGCCGCTGGCTCGGCCCAACTTCGACCCGAAGGAGAAATTGCTCGGCAAGGGCCAGGACCCGTCCGGCAAGAACAGTATTAAGAGCACGTTCCGGCATTTGCAGGTGTGGCGACTACCGCAAGCTCCAAGCTTTGGCGAGTTTACCAACGGCTTAACGCTGAGCTTTGCAACCAAGGAGAAAAAGCAAAAAATAATGAGATTAGGCAAAAAGAAGGAGAAAGATCGCGATGCTGAAAAAGGAGCAGTGCGTTCGAAGGGGTGGCCCGGTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7518#0 TTTGTAGTGAGAAAATTTATTCATCACAGTTAAGCGTGGTAGTGTATTGTACAGTTGACC 60 consensus_7518#1 ------------------------------------------------------------ consensus_7518#0 TTGCGTTCTCTTACGAAGAACCGTGTGGAACGTGTTTGCTCCCGGTGTGGCTATCCGCGC 120 consensus_7518#1 ----------------CCGCCCACGCGTC-CGCCCACGCGTCCGATCGGGCGGACCGTGC 43 ** * * ** ** *** * *** *** ** consensus_7518#0 -CATACGAAC--ACCACGTTTGCGATGGTGAACGCGTACAGTGCAATCATTTGT--ACCA 175 consensus_7518#1 ACACAAGTTCCTATTGCCGAGGCGATGGTTAACTATCGCGATGAAGACTCTTGTCAAATA 103 ** * * * * * ******** *** * ** * * **** * * consensus_7518#0 TCAGTGTAGTTTTCCGCCAGCGTGAAAACGATGCGTCCTTATTTACGTCCAATTCGCCTC 235 consensus_7518#1 TTTGTACCGTTTGTTAGTGACGTAAGAAT----TGGCTGTTTAGAAGGGCCGCAGGTGTC 159 * ** **** *** * ** * * * * * * * * ** consensus_7518#0 CCTTCCGTCTGGTAAGATATTCGAGAACGTTGAAAGCTACATGGGCCAGCACGTGAATGC 295 consensus_7518#1 GCTTGATCTCGACGAATCGTTCACGTAC-------GCTTCGCAGGGCAGTGC-CGACCGG 211 *** * * *** * ** *** * ** *** * ** * consensus_7518#0 CCACTGCACCGGCAAGCAGGCCATACATCACCGAGGATATGTGGGCCGGTTCCAGTCCGA 355 consensus_7518#1 ATGCTGTCC-----AGTTCGCCGC------CCCAGAGCGGTCGCACC--TCGCCGCCCGC 258 *** * ** *** ** ** * ** * * * *** consensus_7518#0 TTCCCAGGAACATGTTCGTTACTGCCAGGATGTAGGCAGCATGGCCCAGGAGAGTGTGCA 415 consensus_7518#1 TTCGCAAACAC-CGAGCGCCATCGCCCAGCTGCAG-----------CAGAAAGATCTGCA 306 *** ** ** * ** * *** * ** ** *** * * **** consensus_7518#0 GGATTCTAATCGCGGACTGTGCCGGCTGCTGGCTCGGTCTCATTAGTCCCAGGATGGGCT 475 consensus_7518#1 GCAGC--AGCAGCTG-CTGCAGCAATCGTCCTCCTCGTCCTCCTCGCAGGTGCAGGAGTC 363 * * * ** * *** * * * *** * * * * * * consensus_7518#0 GGATGAACACGAGGGCGAACGTCGCCAGACCGACGATGCTGTGCGCGTGTGCCTCAAATC 535 consensus_7518#1 GCTCGAGCTGCAGGTTGACTATTG----GCCGCTGGCTCGGCCCAACTTCGACCCGAAGG 419 * ** * *** ** * * *** * * * * * * * * ** consensus_7518#0 CCCGTACA-TCGACAAAAATGCACACGATGGCGGCGCATGTCAGTATCCAGCTGGCTATC 594 consensus_7518#1 AGAAATTGCTCGGCAAGGGCCAGGACCCGTCCGGCA-AGAACAGTATTAAGAGCACGTTC 478 *** *** ** **** * ****** ** * ** consensus_7518#0 ATGTAAATCCGATGGTAAAAATTCCACACCGGCACTCCAAAGTACCGACGGGTGGTCCA- 653 consensus_7518#1 CGGCATTTGCAGGTGTGGCGACT----ACCGCAAGCTCCAAGCTTTGGCGAGTTTACCAA 534 * * * * ** * * **** * * *** * ** ** *** consensus_7518#0 TGTTGTTTTGAAATACCTTGCAACGGTGTTTCCGAGGGAATTGAAGAACAGCCAAGCAAC 713 consensus_7518#1 CGGCTTAACGCTGAGCTTTGCAACCAAGG----AGAAAAAGCAAAAAATAATGAGATTA- 589 * * * * ******* * ** ** ** * * * consensus_7518#0 TACCATGAGCGTACCGTGCAGTCGCAACAGCACCGAGGGATGGTCATGGTCGTGGTCGTG 773 consensus_7518#1 -GGCAAAAAGAAGGAGAAAGATCGCGATGCTGAAAAAGGAGCAGTGCGTTCGAAGGGGTG 648 ** * * **** * * *** * *** * *** consensus_7518#0 GTCGTCGTCATGGTCGTGATCGTGTTCGTGATCTGTCATTGTGTGTATGTTTTCTTCTTC 833 consensus_7518#1 GCC-CGGTTA-------------------------------------------------- 657 * * ** * consensus_7518#0 TGATCCTTCTGCTCTACACTAGACCTTCTCGGACCTTCTGCTGCTCCACACTGACGGACC 893 consensus_7518#1 ------------------------------------------------------------ consensus_7518#0 GGTATGGTTTGTACAGCACTACACCACCGTCGGCAAGCCGAAACGGATCCACCACCTCCG 953 consensus_7518#1 ------------------------------------------------------------ consensus_7518#0 GACCTCCTCTGCAAAACACACACACACACACACGTGCTCCCGTTCGTTCCCAACAGACGG 1013 consensus_7518#1 ------------------------------------------------------------ consensus_7518#0 TCGGCCCGGTTCGCGAAGTGGGCGGACGCGTGGGCGG 1050 consensus_7518#1 ------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||