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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7519#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1361 fasta sequence
[TTTGCCGTGGTTAGGCTTTATTTCTATACAAGGAATATCGGAAGGTAGCATCTCTGGATTAAATTTCTCTGGTTAGAACTAGTAACTCTCTATCAGATTGCGAATCACTTTAGGTTGTAGTAGTTGCTAGTTGCTTTTGTGCTGAGTGTCATAGTACGCGTTTGCGCTGGTCCTTCTGTTTCCTGTTGTCTTAGATCAGCTTGAAATGGTGCCCATTGATGACTGGCTTCGTCCCACAGGTGAGATTCTGTGGAAGCTTCGATAGGACGAACTTGGGTTTTTTCTGCTTGGTCGACATGAACCCGATGCACATGGAGTTGGTCGTGTGCGCCCACAGCAGAACGCCATCCCCGCTGGCAGTGTTGTAGATGATCGAAAGCGAACCGGCGTGTATCGCCTTCTGCTTCGACAGGAACGGTGACTCGAGCAGCTTCTTCTTGTACGTCAGAAGCTGCGAAGTGATTGGACAGTTGCAGCTGATCAGATCGTCCACCAGCTCCTTGGCGAACAGCGTCTTCATCAGATACTCGCCGTTGCCGGTGGTGCAGGATGCGGCCGACATGCTGGTGCTTTCGTCCATCAGCGCCCAACAGCCGGCCCCGTACGTTGCCGCTTGTCCCACCCGGCCGCTCAGCTTCAGCATTAGACCGCCGGAACTGCAACCGGCCACGATCGAACCTTCCGCATCGACGCACACCGCACCGACCGTGTCCAGCGGTGATAGTTTTGCCCGGTTCATCTCTTCGTACTGCATGATTTGCGATCGGTAGTGGTCGTACTTTTTGGCCGCATTCACCGAT-ATC-ATGTGCTCGGCCGGCACCAGCTGCAGTCCGACTTCGCGCGCGTACGCCGACG-CA-CCCTGCCCTACCAGCACCATC-GGTGGTATCCGGCCGAAGCTGAGCAGCTTTGATTGTCGCTCGCACAGGTGGCGTGCCAGGCTGATCGGGTTCTTTACGTCGGTCACGTTGGTGCAGGCACCGAACTGT-AGCGACGCACCGTCCATGATGCACGCGTCGCACTCCA-CC--TTCGGTCCCAGTTGAGGTTCGAGCCGATGCCCGCATTCGTGGCGGTCGAGTTTTCCAGCAGGACGATGGCGCGCTCGCATGCGTCCAACGCGGTTCCGCCCGCGTACAGCACGTTGACCGCCTGATTGCACGCCTCTCGGCAGACGTGCTCGTACAGCGTCTCGTCGAGGAAGTTTCCCGCACCCGTATGCACCGCTACGAATCCGGTCATTGTTACTATCGCTCTTGCTTT---TTTACGAACAATTACATTTGGACAACACTACATTGGCACGGGAAACTGTAGATGGTAATTGTATCGATTTTAGAACCGCGCACTGCGACG-GTAGGATGTTTCGG]
[+] EMBL CNS08DAR [TTTGCCGTGGTTAGGCTTTATTTCTATACAAGGAATATCGGAAGGTAGCATCTCTGGATTAAATTTCTCTGGTTAGAACTAGTAACTCTCTATCAGATTGCGAATCACTTTAGGTTGTAGTAGTTGCTAGTTGCTTTTGTGCTGAGTGTCATAGTACGCGTTTGCGCTGGTCCTTCTGTTTCCTGTTGTCTTAGATCAGCTTGAAATGGTGCCCATTGATGACTGGCTTCGTCCCACAGGTGAGATTCTGTGGAAGCTTCGATAGGACGAACTTGGGTTTTTTCTGCTTGGTCGACATGAACCCGATGCACATGGAGTTGGTCGTGTGCGCCCACAGCAGAACGCCATCCCCGCTGGCAGTGTTGTAGATGATCGAAAGCGAACCGGCGTGTATCGCCTTCTGCTTCGACAGGAACGGTGACTCGAGCAGCTTCTTCTTGTACGTCAGAAGCTGCGAAGTGATTGGACAGTTGCAGCTGATCAGATCGTCCACCAGCTCCTTGGCGAACAGCGTCTTCATCAGATACTCGCCGTTGCCGGTGGTGCAGGATGCGGCCGACATGCTGGTGCTTTCGTCCATCAGCGCCCAACAGCCGGCCCCGTACGTTGCCGCTTGTCCCACCCGGCCGCTCAGCTTCAGCATTAGACCGCCGGAACTGCAACCGGCCACGATCGAACCTTCCGCATCGACGCACACCGCACCGACCGTGTCCAGCGGTGATAGTTTTGCCCGATTCATCTCTTCGTACTGCATGATTTGCGATCGGTAGTGGTCGTACTTTTTGGCCGCATTCACCGAT ATC ATGTGCTCGGCCGGCACCAGCTGCAGTCCGACTTCGCGCGCGTACGCCGACG CA CCCTGCCCTACCAGCACCATC GGTGGTATCCGGCCGAAGCT ]
[-] EMBL BM581891 [ TAGTAGTTGCTAGTTGCTTTTGTGCTGAGTGTCATAGTACGCGTTTGCGCTGGTCCTTCTGTTTTCTGTTGTCTTAGATCAGCTTGAAATGGTGCCCATTGATGACTGGCTTCGTCCCACAGGTGAGATTCTGTGGAAGCTTCGATAGGACGAACTTGGGTTTTTTCTGCTTGGTCGACATGAACCCGATGCACATGGAGTTGGTCGTGTGCGCCCACAGCAGATCGCCATCCCCGCTGGCAGTGTTGTAGATGATCGAAAGCGAACCGGCGTGTATCGCCTTCTGCTTCGACAGGAACGGTGACTCGAGCAGCTTCTTCTTGTACGTCAGATGCTGCGAAGTGATTGGACAGTTGCAGCTGATCAGATCGTCCACCAGCTCCTTGGCGAACAGCGTCTTCATCAGATACTCGCCGTTGCCGGTAGTGCAGGATGCGGCCGACATGCTGGTGCTTTCGTCCATCAGCGCCCAACAGCCGGCCCCGTACGTTGCCGCCTGGCCCACCCGGCCGCTCAGCTTCAGCATTAGGCCGCCGGAACTGCAACCGGCCACGATCGAACCTTCCGCATCGACGCACACCGCACCGACCGTGTCCAGCGGTGATAGTTTTGCCCGGTTCATCTCTTCGTACTGCATGATTTGCGATCGGTAGTGGTCGTACTTTTTGGCCGCATTCACCGAT ATC ATGTGC CGG ]
[-] EMBL BX626888 [ ACACCGCACCGACCGTGTCCAGCGGTGATAGTTTTGCCCGGTTCATCTCTTCGTACTGCATGATTTGCGATCGGTAGTGGTCGTACTTTTTGGCCGCATTCACCGAT ATC ATGTGCTCGGCCGGCACCAGCTGCAGTCCGACTTCGCGCGCGTACGCCGACG CA CCCTGCCCTACCAACACCATC GGTGGTATCCGGCCGAAGCTGAGCAGCTTTGATTGTCGCTCGCACAGGTGGCGTGCCAGGCTGATCGGGTTCTTGACGTCGGTCACGTTGGTGCAGGCACCGAACTGT AGCGAAGCACCGTCCATGATGCACGCGTCGCACTCCACCC TTCGGTCCCAGTTGAGGTTCGAGCCGATGCCCGCATTCGTGGCGGTCGAGTTTTCCAGCAGGACGATGGCGCGCTCGCATGCGTCCAACGCGGTTCCGCCCGCGTACAGCACGTTGACCGCCTGATTGCACGCCTCTCGGCAGACGTGCTCGTACAGCGTCTCGTCGAGGAAGTTTCCCGCACCCGTATGCACCGCTACGAATCCGGTCATTGTTACTAACGCTCTTGCTTT TTTACGAACAATTACATTT ]
[-] EMBL BM615280 [ GCATGATTTGTGATCGGTAGTGGTCGTACTTTTTGGCCGCATTCACCGAT ATC ATGTGCTCGGCCGGCACCAGCTGCAGTCCGACTTCGCGCGCGTACGCCGACG CATCCCTGCCCTACCAGCACCATC GGTGGTATCCGGCCGAAGCTGAGCAGCTTTGATTGTCGCTCGCACAGGTGGCGTGCCAGGCTGATCGGGTTCTTTACGTCGGTCACGTTGGTGCAGGCACCGAACTGT AGCGACGCACCGTCCATGATACACGCGTCGCACTCCACCC TTCGGTCCCAGTTGAGGTTCGAGCCGATGCCCGCATTCGTGGCGGTCGAGTTTTCCAGCAGGACAATGGCGCGCTCGCATGCGTCCAACGCGGTTCCGCCCGCGTACAGCACGTTGACCGCCTGATTGCACGCCTCTCGGCAGACGTGCTCGTACAGCGTCTCGTCGAGGAAGTTTCCCGC CCCGTATGCACCGCTACGAATCCGGTCATTGTTACTATCGCTCTTGATTTTTGTTTACGAACAATTACATTTGGACAACACTACATTGGCACGGGAAACTGTAGATGGTAATTGTATCGATTTTAGAACCGCGCACTGCGACG GTAGGATGTTTCGG]
[-] EMBL BM607283 [ CATGATTTGTGATCGGTAGTGGTCGTACTTTTTGGCCGCATTCACCGATAATCAATGT CTCGGCCGGCACCAGCTGCAGTCCGACTTCGCGCGCGTACGCCGACGCCA CCCTGCCCTACCAACACCATCGGGTGGTATCCGGCCGAAGCTGAGCAGCTTTGATTGTCGCTCGCACAGGTGGCGTGCCAGGCTGATCGGGTTCTTTACGTCGGTCACGTTGGTGCAGGCACCGAACTGTAAGCGACGCACCGTCCATGATACACGCGTCGCACTCCA CCCTTTCGGTCCCAGTTGAGGTTCGAGCCGATGCCCGCATTCGTGGCGGTCGAGTTTTCCAGCAGGACAATGGCGCGCTCGCATGCGTCCAACGCGGTTCCGCCCGCGTACAGCACGTTGACCGCCTGATTGCACGCCTCTCGGCAGACGTGCTCGTACAGCGTCTCGTCGAGGAAGTTTCCCGCACCCGTATGCACCGCTACGAATCCGGTCATTGTTACTATCGCTCTTGATTTTTGTTTACGAACAATTACATTTGGACAACACTACATTGGCACGGGAAACTGTAGATGGTAATTGTATCGATTTTAGAACCGCGCACCG GACGCGTGGGcgg ]
[-] EMBL CNS08DAQ [ CGATCGGTAGTGGTCGTACTTTTTGGCCGCATTCACCGAT ATC ATGTGCTCGGCCGGCACCAGCTGCAGTCCGACTTCGCGCGCGTACGCCGACG CA CCCTGCCCTACCAGCACCATC GGTGGTATCCGGCCGAAGCTGAGCAGCTTTGATTGTTGCTCGCACAGGTGGCGTGCCAGGCTGATCGGGTTCTTTACGTCGGTCACGTTGGTGCAGGCACCGAACTGT AGCGACGCACCATCCATGATGCACGCGTCGCACTCCA CC TTCGGTCCCAGTTGAGGTTCGAGCCGATGCCCGCATTCGTGGCGGTCGAGTTTTCCAGCAGGACGATGGCGCGCTGGCATGCGTCCAACGCGGTTCCGCCCGCGTACAGCACGTTGACCGCCTGATTGCACGCCTCTCGGCAGACGTGCTCGTACAGCGTCTCGTCGAGGAAGTTTCCCGCACCCGTATGCACCGCTACGAATCCGGTCATTGTTACTATCGCTCTTGCTTT TTTA ]
consensusID : consensus_7519#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence
[GCAGGGNCNNTATGGCGCCGCTCGGCATGCCGTCCAAACCNCGGTTCCGCCCGCGTACAGCCACGTTGACCGCCTGATTGCACGCCTCTCGGCAGACGTGCTCGTACACGCGTCTCGTCGAGGAAGTTTCCCGCACCCGTATGCACCGTCTACGAATCCGGTCNATTGTTACTAACGCTCTTGCTTCTTTTACGAACAACTTACATTTGGACAACAACTACATTGGCACAGGCAGCTTGTAGATGGTAATTGTATCGATTTTAGAACCGCGCACTGCGACGGTAGGATGTTTTGTTTATACAACCTCGGCCGATTCTGC]
[-] EMBL BX468587 [GCAGGGNCNNTATGGCGCCGCTCGGCATGCCGTCCAAACCNCGGTTCCGCCCGCGTACAGCCACGTTGACCGCCTGATTGCACGCCTCTCGGCAGACGTGCTCGTACACGCGTCTCGTCGAGGAAGTTTCCCGCACCCGTATGCACCGTCTACGAATCCGGTCNATTGTTACTAACGCTCTTGCTTCTTTTACGAACAACTTACATTTGGACAACAACTACATTGGCACAGGCAGCTTGTAGATGGTAATTGTATCGATTTTAGAACCGCGCACTGCGACGGTAGGATGTTTTGTTTATACAACCTCGGCCGATTCTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7519#0 TTTGCCGTGGTTAGGCTTTATTTCTATACAAGGAATATCGGAAGGTAGCATCTCTGGATT 60
consensus_7519#1 ------------------------------------------------------------
consensus_7519#0 AAATTTCTCTGGTTAGAACTAGTAACTCTCTATCAGATTGCGAATCACTTTAGGTTGTAG 120
consensus_7519#1 ------------------------------------------------------------
consensus_7519#0 TAGTTGCTAGTTGCTTTTGTGCTGAGTGTCATAGTACGCGTTTGCGCTGGTCCTTCTGTT 180
consensus_7519#1 ------------------------------------------------------------
consensus_7519#0 TCCTGTTGTCTTAGATCAGCTTGAAATGGTGCCCATTGATGACTGGCTTCGTCCCACAGG 240
consensus_7519#1 ------------------------------------------------------------
consensus_7519#0 TGAGATTCTGTGGAAGCTTCGATAGGACGAACTTGGGTTTTTTCTGCTTGGTCGACATGA 300
consensus_7519#1 ------------------------------------------------------------
consensus_7519#0 ACCCGATGCACATGGAGTTGGTCGTGTGCGCCCACAGCAGAACGCCATCCCCGCTGGCAG 360
consensus_7519#1 ------------------------------------------------------------
consensus_7519#0 TGTTGTAGATGATCGAAAGCGAACCGGCGTGTATCGCCTTCTGCTTCGACAGGAACGGTG 420
consensus_7519#1 ------------------------------------------------------------
consensus_7519#0 ACTCGAGCAGCTTCTTCTTGTACGTCAGAAGCTGCGAAGTGATTGGACAGTTGCAGCTGA 480
consensus_7519#1 ------------------------------------------------------------
consensus_7519#0 TCAGATCGTCCACCAGCTCCTTGGCGAACAGCGTCTTCATCAGATACTCGCCGTTGCCGG 540
consensus_7519#1 ------------------------------------------------------------
consensus_7519#0 TGGTGCAGGATGCGGCCGACATGCTGGTGCTTTCGTCCATCAGCGCCCAACAGCCGGCCC 600
consensus_7519#1 ------------------------------------------------------------
consensus_7519#0 CGTACGTTGCCGCTTGTCCCACCCGGCCGCTCAGCTTCAGCATTAGACCGCCGGAACTGC 660
consensus_7519#1 ------------------------------------------------------------
consensus_7519#0 AACCGGCCACGATCGAACCTTCCGCATCGACGCACACCGCACCGACCGTGTCCAGCGGTG 720
consensus_7519#1 ------------------------------------------------------------
consensus_7519#0 ATAGTTTTGCCCGGTTCATCTCTTCGTACTGCATGATTTGCGATCGGTAGTGGTCGTACT 780
consensus_7519#1 ------------------------------------------------------------
consensus_7519#0 TTTTGGCCGCATTCACCGATATCATGTGCTCGGCCGGCACCAGCTGCAGTCCGACTTCGC 840
consensus_7519#1 ------------------------------------------------------------
consensus_7519#0 GCGCGTACGCCGACGCACCCTGCCCTACCAGCACCATCGGTGGTATCCGGCCGAAGCTGA 900
consensus_7519#1 ------------------------------------------------------------
consensus_7519#0 GCAGCTTTGATTGTCGCTCGCACAGGTGGCGTGCCAGGCTGATCGGGTTCTTTACGTCGG 960
consensus_7519#1 ------------------------------------------------------------
consensus_7519#0 TCACGTTGGTGCAGGCACCGAACTGTAGCGACGCACCGTCCATGATGCACGCGTCGCACT 1020
consensus_7519#1 ------------------------------------------------------------
consensus_7519#0 CCACCTTCGGTCCCAGTTGAGGTTCGAGCCGATGCCCGCATTCGTGGCGGTCGAGTTTTC 1080
consensus_7519#1 -----------------------------------------------------------G 1
consensus_7519#0 CAGCAGGACGATGGCGC-GCTCG-CATGC-GTCCAA--CGCGGTTCCGCCCGCGTACAGC 1135
consensus_7519#1 CAGGGNCNNTATGGCGCCGCTCGGCATGCCGTCCAAACCNCGGTTCCGCCCGCGTACAGC 61
*** ******* ***** ***** ****** * ********************
consensus_7519#0 -ACGTTGACCGCCTGATTGCACGCCTCTCGGCAGACGTGCTCGTACA-GCGTCTCGTCGA 1193
consensus_7519#1 CACGTTGACCGCCTGATTGCACGCCTCTCGGCAGACGTGCTCGTACACGCGTCTCGTCGA 121
********************************************** ************
consensus_7519#0 GGAAGTTTCCCGCACCCGTATGCACCG-CTACGAATCCGGTCA-TTGTTACTATCGCTCT 1251
consensus_7519#1 GGAAGTTTCCCGCACCCGTATGCACCGTCTACGAATCCGGTCNATTGTTACTAACGCTCT 181
*************************** ************** ********* ******
consensus_7519#0 TGCTT-TTTTACGAACAA-TTACATTTGGACAACA-CTACATTGGCACGGGAAACT-GTA 1307
consensus_7519#1 TGCTTCTTTTACGAACAACTTACATTTGGACAACAACTACATTGGCACAGGCAGCTTGTA 241
***** ************ **************** ************ ** * ** ***
consensus_7519#0 GATGGTAATTGTATCGATTTTAGAACCGCGCACTGCGACGGTAGGATGTTTCGG------ 1361
consensus_7519#1 GATGGTAATTGTATCGATTTTAGAACCGCGCACTGCGACGGTAGGATGTTTTGTTTATAC 301
*************************************************** *
consensus_7519#0 ------------------
consensus_7519#1 AACCTCGGCCGATTCTGC 319
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||