These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7527#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 848 fasta sequence [GCTCAGCAGATGCCCGNNGGTTAATNAAGTAGCGAAAGCGCAGGCAGCAGATGCCTCAGCAAACGATACCATTTTTGGGAAGATTCTACGCAAAGAAATTCCCTGCACGTTCATCTACGAGGATGATAAGTGTGTTGCATTTAACGACGTCGCTCCGCAAGCACCGGTACACTTCCTCGTGATTACCTGCGCAAGACCATTCCGCCAGCTATCGAAAGCGACGGAAGAGGACGAAGCGCTGCTCGGACATTTGATGCTCGTTGGCAAGAAGGTGGCCGCCGAGCAAGGCATGGCAGTGAAGGGTTCCGTGTCGTACATCAACGAACTGGCCAAGAACGGTGCCCAGATCAGGTTNTACNCATCTGCATCTGCACTNTCCTCGNGCCGGGACGGCAGCATAGCANNATCTTGNGAACCGCACGAGGGCTNAACACGCAGAATNGTAGGCTTGGCTTGCCCACCGGCTAACGGCCCTGGNGCATTAAANGCAAGATAGCTNTACTAGTAATNCAAAACAAAATCGGCNANANAATAATTCAGACACTNACCACCTANGCGANCACCCACCAANCTGGAAAAACCGGGCACAANATTGGTCNCANNNGGGCGCACNACCACCANACACACNAACCACNACANCNCCCNACAACAGACANACCANCAAAANNAAACCNCAAACGCAGGCCCACAACTATGGACAACACAGGCCGCAGCCCCCGCGCACACNGACCCCCCACANAACTANTACACCCCNCGCCATCCAAAACGCANGCAAGCGANGATCAACACCACACACACACACACANGCCANATNANGGGGACNAANNACCACTGGGCAGCCCCGGAAC] [+] EMBL AL694729 [GCTCAGCAGATGCCCGNNGGTTAATNAAGTAGCGAAAGCGCAGGCAGCAGATGCCTCAGCAAACGATACCATTTTTGGGAAGATTCTACGCAAAGAAATTCCCTGCACGTTCATCTACGAGGATGATAAGTGTGTTGCATTTAACGACGTCGCTCCGCAAGCACCGGTACACTTCCTCGTGATTACCTGCGCAAGACCATTCCGCCAGCTATCGAAAGCGACGGAAGAGGACGAAGCGCTGCTCGGACATTTGATGCTCGTTGGCAAGAAGGTGGCCGCCGAGCAAGGCATGGCAGTGAAGGGTTCCGTGTCGTACATCAACGAACTGGCCAAGAACGGTGCCCAGATCAGGTTNTACNCATCTGCATCTGCACTNTCCTCGNGCCGGGACGGCAGCATAGCANNATCTTGNGAACCGCACGAGGGCTNAACACGCAGAATNGTAGGCTTGGCTTGCCCACCGGCTAACGGCCCTGGNGCATTAAANGCAAGATAGCTNTACTAGTAATNCAAAACAAAATCGGCNANANAATAATTCAGACACTNACCACCTANGCGANCACCCACCAANCTGGAAAAACCGGGCACAANATTGGTCNCANNNGGGCGCACNACCACCANACACACNAACCACNACANCNCCCNACAACAGACANACCANCAAAANNAAACCNCAAACGCAGGCCCACAACTATGGACAACACAGGCCGCAGCCCCCGCGCACACNGACCCCCCACANAACTANTACACCCCNCGCCATCCAAAACGCANGCAAGCGANGATCAACACCACACACACACACACANGCCANATNANGGGGACNAANNACCACTGGGCAGCCCCGGAAC] consensusID : consensus_7527#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 476 fasta sequence [CCGGTCGGATGAAGTAGCGAAAGCGCAGGCAGCTGATGCCTCAGCAAACGATACCATTTTTGGGAAGATTCTACGCAAAGAAATTCCCTGCACGTTCATCTACGAGGATGATAAGTGTGTTGCATTTAACGACGTCGCTCCGCAAGCACCGGTACACTTCCTCGTGATCCCGCGCAAGACCATTCCGCAGCTATCGAAAGCGACGGAAGAGGACGAAGCGCTGCTCGGACATTTGATGCTCGTTGGCAAGAAGGTGGCCGCCGAGCAAGGCATGGAGGAAGGGTTCCGTGTCGTCATCAACGACGGCAAGAACGGTGCCCAGTCGGTTTACCATCTGCATCTGCACTTCCTCGGCGGACGGCAGATGAAGTGGCCGCCGGGCTAAAGCGATGTGCTGCTGCACGTACGCTGAGATAAGAGTGTTTG---TT-TTTTGCAAATATCGAATAAAAAGACAACAGGGAACGGAAATGTTATGG] [+] EMBL BM584345 [CCGGTCGGATGAAGTAGCGAAAGCGCAGGCAGCTGATGCCTCAGCAAACGATACGATTTTTGGGAAGATTCTACGCAAAGAAATTCCCTGCACGTTCATCTACGAGGATGATAAGTGTGTTGCATTTAACGACGTCGCTCCGCAAGCACCGGTACACTTCCTCGTGATCCCGCGCAAGACCATTCCGCAGCTATCGAAAGCGACGGAAGAGGACGAGGCGCTGCTCGGACATTTGATGCTCGTAGGCAAGAAGGTGGCCGCCGAACAAGGCATGGAGGAAGGGTTCCGTGTCGTCATCAACGACGGCAAGAACGGTGCCCAGTCGGTTTACCATCTACATCTGCACTTCCTCGGCGGACGGCAGATGAAGTGGCCGCCGGGCTAAAGCGATGTGCTGCTGCACGTACGCTGAGATAAGAGTGTTTG TTATTTTGCAAACATCGAATAAAAAGACAACAGGGAACGG ] [+] EMBL BM590876 [CCGGTCGGATGAAGTAGCGAAAGCGCAGGCAGCTGATGCCTCAGCAAACGATACCATTTTTGGGAAGATTCTACGCAAAGAAATTCCCTGCACGTTCATCTACGAGGATGATAAGTGTGTTGCATTTAACGACGTCGCTCCGCAAGCACCGGTACACTTCCTCGTGATCCCGCGCAAGACCATTCCGCAGCTATCGAAAGCGACGGAAGAGGACGAAGCGCTGCTCGGACATTTGATGCTCGTTGGCAAGAAGGTGGCCGCCGAGCAAGGCATGGAGGAAGGGTTCCGTGTCGTCATCAACGATGGCAAGAACGGTGCCCAGTCTGTTTACCATCTGCATCTGCACTTCCTCGGCGGACGGCAGATGAAGTGGCCGCCGGGCTAAAGCGATGTGCTGCTGCACGTACACTGAGATTAGAGTGTTTG TTTTGCAAATATCGAATAAAAAGACAACAGGGAACG ] [+] EMBL BM578394 [ ccgGGATGAAGTAGCGAAAGCGCAGGCAGCTGATGCCTCAGCAAACGATACCATTTTTGGGAAGATTCTACGCAAAGAAATTCCCTGCACGTTCATCTACGAGGATGATAAGTGTGTTGCATTTAACGACGTCGCTCCGCAAGCACCGGTACACTTCCTCGTGATCCCGCGCAAGACCATTCCGCAGCTATCGAAAGCGACGGAAGAGGACGAAGCGCTGCTCGGACATTTGATGCTCGTTGGCAAGAAGGTGGCCGCCGAGCAAGGCATGGAGGAAGGGTTCCGTGTCGTCATCAACGATGGCAAGAACGGTGCCCAGTCTGTTTACCATCTGCATCTGCACTTCCTCGGCGGACGGCAGATGAAGTGGCCGCCGGGCTAAAGCGATGTGCTGCTGCACGTACACTGAGATTAGAGTGTTTG TTTTGCAAATATCGAATAAAAAGACAACAGGGAACGGAAATGTTATGG] [+] EMBL BM589947 [ ccgGTAGCGAAAGCGCAGGCAGCAGATGCCTCAGCAAACGATACCATTTTTGGGAAGATTCTACGCAAAGAAATTCCCTGCACGTTCATCTACGAGGATGATAAGTGTGTTGCATTTAACGACGTCGCTCCGCAAGCACCGGTACACTTCCTCGTGATTCCGCGCAAGACCATTCCGCAGCTATCGAAAGCGACGGAAGAGGACGAAGCGCTGCTCGGACATTTGATGCTCGTTGGCAAGAAGGTGGCCGCCGAGCAAGGCATGGAGGAAGGGTTCCGTGTCGTCATCAACGACGGCAAGAACGGTGCCCAGTCGGTTTACCATCTGCATCTGCACTTCCTCGGCGGACGGCAGATGAAGTGGCCGCCGGGCTAAAGCGATGTGCTGCTGCACGTACGCTGAGATAAGAGTGTTTGTTTTT TTTTGCAAATATCGAATAAAAAGACAACAGGGAACGG ] consensusID : consensus_7527#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 353 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCGCAAGCACCGGTACACTTCCTCGTGATCCCGCGCAAGACCATTCCGCAGCTATCGAAAGCGACGGAAGAGGACGAGGCGCTGCTCGGACATTTGATGCTCGTAGGCAAGAAGGTGGCCGCCGAACAAGGCATGGAGGAAGGGTTCCGTGTCGTCATCAACGACGGCAAGAACGGTGCCCAGTCGGTTTACCATCTACATCTGCACTTCCTCGGCGGACGGCAGATGAAGTGGCCGCCGGGCTAAAGCGATGTGCTGCTGCACGTACGCTGAGATAAGAGTGTTTGTTATTTTGCAAACATCGAATAAAAAGACAACAGGGAACGG] [+] EMBL BM598080 [CCGCGGACGCGTGGGCGGACGCGTGGGCGCAAGCACCGGTACACTTCCTCGTGATCCCGCGCAAGACCATTCCGCAGCTATCGAAAGCGACGGAAGAGGACGAGGCGCTGCTCGGACATTTGATGCTCGTAGGCAAGAAGGTGGCCGCCGAACAAGGCATGGAGGAAGGGTTCCGTGTCGTCATCAACGACGGCAAGAACGGTGCCCAGTCGGTTTACCATCTACATCTGCACTTCCTCGGCGGACGGCAGATGAAGTGGCCGCCGGGCTAAAGCGATGTGCTGCTGCACGTACGCTGAGATAAGAGTGTTTGTTATTTTGCAAACATCGAATAAAAAGACAACAGGGAACGG] consensusID : consensus_7527#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 110 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGAAAATGTCGGATGAAGTAGCGAAAGACGCGCAGGCAGCAGATGGCCTCAGCAAACGATACCATTTTTGGGAAGATTCTACGCA] [+] EMBL BM592666 [CCGCGGACGCGTGGGCGGACGCGTGGGAAAATGTCGGATGAAGTAGCGAAAGACGCGCAGGCAGCAGATGGCCTCAGCAAACGATACCATTTTTGGGAAGATTCTACGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7527#0 ------------------------------------------------------------ consensus_7527#3 ------------------------------------------------------------ consensus_7527#1 CCGGTCGGATGAAGTAGCGAAAGCGCAGGCAGCTGATGCCTCAGCAAACGATACCATTTT 60 consensus_7527#2 ------------------------------------------------------------ consensus_7527#0 ------------------------------------------------------------ consensus_7527#3 ------------------------------------------------------------ consensus_7527#1 TGGGAAGATTCTACGCAAAGAAATTCCCTGCACGTTCATCTACGAGGATGATAAGTGTGT 120 consensus_7527#2 ----------------------------------------------------CCGCG-GA 7 consensus_7527#0 -------------GC-TCAGCAGATGCCCGNNGG------TTAATNAAGTAGCGAAAG-- 38 consensus_7527#3 -----CCGCGGACGCGTGGGCGGACGCGTGGGAAAATGT-CGGATGAAGTAGCGAAAGAC 54 consensus_7527#1 TGCATTTAACGACGTCGCTCCGCAAGCACCGGTACACTTCCTCGTGATCCCGCGCAAGAC 180 consensus_7527#2 CGCGTGGGCGGACGCGTGGGCGCAAGCACCGGTACACTTCCTCGTGATCCCGCGCAAGAC 67 * * * ** * * *** *** consensus_7527#0 -----CGCAGGCAGCAGA--TG-CCTCAGCAAACGATACCATTTTTGG------GAAGAT 84 consensus_7527#3 G----CGCAGGCAGCAGA--TGGCCTCAGCAAACGATACCATTTTTGG------GAAGAT 102 consensus_7527#1 CATTCCGCAGCTATCGAAAGCGACGGAAGAGGACGAAGCGCTGCTCGGACATTTGATGCT 240 consensus_7527#2 CATTCCGCAGCTATCGAAAGCGACGGAAGAGGACGAGGCGCTGCTCGGACATTTGATGCT 127 ***** * * * * * ** **** * * * ** ** * * consensus_7527#0 TCTACGCAAAGAAATTCCCTGCACGTTCATCTACGAGGATGATAAGTGTGTTGCATTTAA 144 consensus_7527#3 TCTACGCA---------------------------------------------------- 110 consensus_7527#1 CGTTGGCAAGAAGGTGGCCGCCGAGCAAGGCATGGAGGAAGGGTTCCGTGTCGTCATCAA 300 consensus_7527#2 CGTAGGCAAGAAGGTGGCCGCCGAACAAGGCATGGAGGAAGGGTTCCGTGTCGTCATCAA 187 * *** consensus_7527#0 CGACGTCGCTCCGCAAGCACCGGTACACTTCCTCGTGATTACCTGCGCAAGACCATTCCG 204 consensus_7527#3 ------------------------------------------------------------ consensus_7527#1 CGACGGCAAGAACGGTGCCCAGTCGGTTTACCATCTGCATCTGCACTTCCTCGGCGGACG 360 consensus_7527#2 CGACGGCAAGAACGGTGCCCAGTCGGTTTACCATCTACATCTGCACTTCCTCGGCGGACG 247 consensus_7527#0 CCAGCTATCGAAAGCGACGGAAGAGGACGAAGCGCTGCTCGGACATTTGATGCTCGTTGG 264 consensus_7527#3 ------------------------------------------------------------ consensus_7527#1 GCAGATGAAGTGGCCGCCGGGCTAAAGCGATGTGCTGCT-GCACGTACGCTGAGATAAGA 419 consensus_7527#2 GCAGATGAAGTGGCCGCCGGGCTAAAGCGATGTGCTGCT-GCACGTACGCTGAGATAAGA 306 consensus_7527#0 CAAGAAGGTGGCCGCCGAGCAAGGCATGGCAGTGAAGGGTTCCGTGTCGTACATCAACGA 324 consensus_7527#3 ------------------------------------------------------------ consensus_7527#1 GTGTTTGTT-TTTTGCAAATATCGAATAAAAAGACAACAGGGAACGGAAATGTTATGG-- 476 consensus_7527#2 GTGTTTGTTATTTTGCAAACATCGAATAAAAAGACAACAGGGAACGG------------- 353 consensus_7527#0 ACTGGCCAAGAACGGTGCCCAGATCAGGTTNTACNCATCTGCATCTGCACTNTCCTCGNG 384 consensus_7527#3 ------------------------------------------------------------ consensus_7527#1 ------------------------------------------------------------ consensus_7527#2 ------------------------------------------------------------ consensus_7527#0 CCGGGACGGCAGCATAGCANNATCTTGNGAACCGCACGAGGGCTNAACACGCAGAATNGT 444 consensus_7527#3 ------------------------------------------------------------ consensus_7527#1 ------------------------------------------------------------ consensus_7527#2 ------------------------------------------------------------ consensus_7527#0 AGGCTTGGCTTGCCCACCGGCTAACGGCCCTGGNGCATTAAANGCAAGATAGCTNTACTA 504 consensus_7527#3 ------------------------------------------------------------ consensus_7527#1 ------------------------------------------------------------ consensus_7527#2 ------------------------------------------------------------ consensus_7527#0 GTAATNCAAAACAAAATCGGCNANANAATAATTCAGACACTNACCACCTANGCGANCACC 564 consensus_7527#3 ------------------------------------------------------------ consensus_7527#1 ------------------------------------------------------------ consensus_7527#2 ------------------------------------------------------------ consensus_7527#0 CACCAANCTGGAAAAACCGGGCACAANATTGGTCNCANNNGGGCGCACNACCACCANACA 624 consensus_7527#3 ------------------------------------------------------------ consensus_7527#1 ------------------------------------------------------------ consensus_7527#2 ------------------------------------------------------------ consensus_7527#0 CACNAACCACNACANCNCCCNACAACAGACANACCANCAAAANNAAACCNCAAACGCAGG 684 consensus_7527#3 ------------------------------------------------------------ consensus_7527#1 ------------------------------------------------------------ consensus_7527#2 ------------------------------------------------------------ consensus_7527#0 CCCACAACTATGGACAACACAGGCCGCAGCCCCCGCGCACACNGACCCCCCACANAACTA 744 consensus_7527#3 ------------------------------------------------------------ consensus_7527#1 ------------------------------------------------------------ consensus_7527#2 ------------------------------------------------------------ consensus_7527#0 NTACACCCCNCGCCATCCAAAACGCANGCAAGCGANGATCAACACCACACACACACACAC 804 consensus_7527#3 ------------------------------------------------------------ consensus_7527#1 ------------------------------------------------------------ consensus_7527#2 ------------------------------------------------------------ consensus_7527#0 ANGCCANATNANGGGGACNAANNACCACTGGGCAGCCCCGGAAC 848 consensus_7527#3 -------------------------------------------- consensus_7527#1 -------------------------------------------- consensus_7527#2 -------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||