These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7533#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1310 fasta sequence [GCAGAATTCGGCACGNNTGGCAGTACAATCATGATCAGCCCGGAGTTCCGGCTGACCAAGAACAAGCTCTACCATGCGTACGCCGACTAAAGGGGCCCCCGAGGGGCAAACTTATCATTGCCCCCCCCCCCCCTCCGCCTCCCCCTCTTTTCCCCTTTACTTCTCCCACCCCACTTATTGCCTTCGAATCCCGTTTTTGTGTGTTGCAAGCGCAAATTGGGACAGGGCCAATACAACTGAACAAACCTACAACAACAATGTGTGTTTCTCATCACCACCCACCCCACCGTGTGTGTGTGTGTGTGCCCAACACAGCATCAACATCACACGAGCACACCCCACCCCCCCGTTTGGCGGACCGGTAGGCAGTAGCAGCGGCTGACCATTTTGTATTCCAAGAGGAGGAAGTAAAC-TACACGACCCACCCACCGGT----ACCCACCCCGCACCACCACCAAGAGCGCGCGCGCGCAGCCAGCAATTATCGAAGAAGAAAAAACAAGTGAAATAATGTGCATTTGTGTGTAATGTAAATGTGTGCAAAATTGTGCAACGAAGAAAAAGAGAAAAGCAAAGAAAAGAAAAGAAAAAAAGCATTAAAATTAACGAAAAGCGAAGCAGAATGGAATGGAACAAAATTAATGATAAACAGATTTAAAACAAGAAAAAAAAAAATTAAGTTCATGGTACACAAAAACTAACATGATAAGCAACACACAAACACATACAAGAAGAGAGAGGAGAGAGAGAGGGAGAGCGAAGGAGAGGGCAGGAGATGATGGTGGAAATGCAAATAGGTGGATAAGCCAGTGGAAGTCAGGAAAAGCCGATAATAAAGCATTTGTGAGTAAAGGGATGGAAAGGAGAGCAAGCAGTGTAGGATGAAGACACAGAAACACATTACACATTACGCCCATACACACATAGTAACACAACTCAACACGAGCACACATTGAAAACAGTCAAAAACACAAACACACACACACACACACACAGACAAACTATACACGCAACGTGTACCGATTCCTTAACTGACGAGGTAGCTCTTTTCCTCCTGTTCGTTTGTTTTTGAAACAAGAAAACAAATCATTGATCTTAAGCTTAGCATTGAAAGGAAGATATTTTTTGAAAATGTTTTTCCTTCCTTCTCTTTTGTCTAAAACAAAAGCAAAACAACACACACACACAGTGGTGTTCCCGGTTTTGTCTCTTTGTATAAATTATTCGAGCGCCGTGCGTTAAATACAAAAAACAGTAAAGGAAAAAACAACTAATAGCAGCGCCGCAGCAAACGAAAACAAAAGTTTATAATT] [+] EMBL BX467904 [GCAGAATTCGGCACGNNTGGCAGTACAATCATGATCAGCCCGGAGTTCCGGCTGACCAAGAACAAGCTCTACCATGCGTACGCCGACTAAAGGGGCCCCCGAGGGGC ] [+] EMBL BM585764 [ ccggTGGCAGCACAATCATGATCAGCCCGGAGTTCCGGCTGACCAAGAACAAGCTCTACCATGCGTACGCCGACTAAAGGGGCCCCCGAGGGGCAAACTTATCATTGCCCCCCCCCCCCCTCCGCCTCCCCCTCTTTTCCCCTTTACTTCTCCCACCCCACTTATTGCCTTCGAATCCCGTTTTTGTGTGTTGCAAGCGCAAATTGGGACAGGGCCAATACAACTGAACAAACCTACAACAACAATGTGTGTTTCTCATCACCACCCACCCCACCGTGTGTGTGTGTGTGTGCCCAACACAGCATCAACATCACACGAGCACACCCCACCCCCCCGTTTGGCGGACCGGTAGGCAGTAGCAGCGGCTGACCATTTTGTATTCCAAGAGGAGGAAGTAAAC TACACGACCCACCCACCGGT ACCCACCCCGCACCACCA ] [+] EMBL BM609366 [ ccGCGCAAATTGGGACAGGGCCAATACAACTGAACAAACCTACAACAACAATGTGTGTTTCTCATCACCACCCACCCCACCGTGTGTGTGTGTGTGTGCTCAACACAGCATCAACATCACACGAGCACACCCCACCCCCCCGTTTGGCGGACCGGTAGGCAGTAGCAGCGGCTGACCATTTTGTATTCCAAGAGGAGGAAGTAAACTTACACGACCCACCCACCGGTACCCACCCACCCCGCACCACCACCAAGAGCGCGCGCGCGCAGCCAGCAATTATCGAAGAAGAAAAAACAAGTGAAATAATGTGCATTTGTGTGTAATGTAAATGTGTGCAAAATTGTGCAACGAAGAAAAAGAGAAAAGCAAAGAAAAGAAAAGAAAAAAAGCATTAAAATTAACGAAAAGCGAAGCAGAATGGAATGGAACAAAATTAATGATAAACAGATTTAAAACAAGAAAAAAAAAAATTAAGTTCATGGTACACAAAAACTAACATGATAAGCAACACACAAACACATACAAGAAGAGAGAGGAGAGAGAGAGGGAGAGCGAAGGAGAGGGCAGGAGATGATGGTGGAAATGCAAATAGGTGGATAAGCCAGTGGAAGTCAGGAAAAGCCGATAATAAAGCATTTGT ] [+] EMBL BX626963 [ cnAAGAGAGAGGAGAGAGAGAGGGAGAGCGAAGGAGAGGGCAGGAGATGATGGTGGAAATGCAAATAGGTGGATAAGCCAGTGGAAGTCAGGAAAAGCCGATAATAAAGCATTTGTGAGTAAAGGGATGGAAAGGAGAGCAAGCAGTGTAGGATGAAGACACAGAAACACATTACACATTACGCCCATACACACATAGTAACACAACTCAACACGAGCACACATTGAAAACAGTCAAAAACACAAACACACACACACACACACACAGACAAACTATACACGCAACGTGTACCGATTCCTTAACTGACGAGGTAGCTCTTTTCCTCCTGTTCGTTTGTTTTTGAAACAAGAAAACAAATCATTGATCTTAAGCTTAGCATTGAAAGGAAGATATTTTTTGAAAATGTTTTTCCTTCCTTCTCTTTTGTCTAAAACAAAAGCAAAACAACACACACACACAGTGGTGTTCCCGGTTTTGTCTCTTTGTATAAATTATTCGAGCGCCGTGCGTTAAATACAAAAAACAGTAAAGGAAAAAACAACTAATAGCAGCGCCGCAGCAAACGAAAACAAAAGTTTATAATT] consensusID : consensus_7533#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence [ATTGCCCNGAGGTTTACATGCCAAGTTCGAGAACCTGTGCATGTGATGAAGTCGGTGCTGGAGAGCAAGGTGGAGAAGNGTGATGGTGTCGAACCTGGCTGGTGGACTCGCCCTGCTGCATCTGTGACGTCGCAGTACTGGCTGGTCTGGCCAACATGGAGCTGCATCATGAATTGCTGCATGTGCTGCTGCTGTNACTCGTCGGCCATGGGCTACATTTGCTGGGCAAGAAGCATCTCGAGATCAACCCTGGACCATGCCATCATCGAGACTGCTGCTGCCAGCTGCTGCCGAGGCTGGACAAGAACTGATAAGTGCTGGTGAAGNGATCTGGTGATTCTTGCTGTTCTGAGACTGGTGCTGCTGTCCTCCGGCTTCTCGCTGGACTGAGCCCTGGAACCCATGCTGTCCCTGCATCTACCGCATGATCAAGCTGGGTCTGGGCATCGACGAGGACNGAGCCTGATGACTGACGTGACTGAGAGCAGCAGCGGTGCTTGCTGGCTGGCTGNGCCCCAGNCGTCGGGTGATGCTCCGCGCNTGGTGNACGACTCGCGAGGATCTGTCGCACATGGCAGGAGGTCGATTAAGGTGGTAACAGAAGCTTTAGTAAAGCTCTTTACAATTCGCTACACAACGTTAAGGAACGCCACCACACGCCAGTCT] [+] EMBL AL930095 [ATTGCCCNGAGGTTTACATGCCAAGTTCGAGAACCTGTGCATGTGATGAAGTCGGTGCTGGAGAGCAAGGTGGAGAAGNGTGATGGTGTCGAACCTGGCTGGTGGACTCGCCCTGCTGCATCTGTGACGTCGCAGTACTGGCTGGTCTGGCCAACATGGAGCTGCATCATGAATTGCTGCATGTGCTGCTGCTGTNACTCGTCGGCCATGGGCTACATTTGCTGGGCAAGAAGCATCTCGAGATCAACCCTGGACCATGCCATCATCGAGACTGCTGCTGCCAGCTGCTGCCGAGGCTGGACAAGAACTGATAAGTGCTGGTGAAGNGATCTGGTGATTCTTGCTGTTCTGAGACTGGTGCTGCTGTCCTCCGGCTTCTCGCTGGACTGAGCCCTGGAACCCATGCTGTCCCTGCATCTACCGCATGATCAAGCTGGGTCTGGGCATCGACGAGGACNGAGCCTGATGACTGACGTGACTGAGAGCAGCAGCGGTGCTTGCTGGCTGGCTGNGCCCCAGNCGTCGGGTGATGCTCCGCGCNTGGTGNACGACTCGCGAGGATCTGTCGCACATGGCAGGAGGTCGATTAAGGTGGTAACAGAAGCTTTAGTAAAGCTCTTTACAATTCGCTACACAACGTTAAGGAACGCCACCACACGCCAGTCT] consensusID : consensus_7533#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 466 fasta sequence [CCGCGGACGCGTGGGAGAAAAGCAAAGAAAAGAAAAGAAAAAAAGCATTAAAATTAACGAAAAGCGAAGCAGAATGGAATGGAACAAAATTAGTGATAAACAGATTTAAAACAAGAAAAAAAAAAATTAAGTTCATGGTACACAAAAACTAACATGATAAGCAACACACAAACACATACAAGAAGAGAGAGGAGAGAGAGAGGGAGAGCGAAGGAGAGGGCAGGAGATGATGGTGGAAATGCAAATAGGTGGATAAGCCAGTGGAAGTCAGGAAAAGCCGATAATAAAGCATTTGTGAGTAAAGGGATGGAAAGGAGAGCAAGCAGTGTAGGATGAAGACACAGAAACACATTACACATTACGCCCATACACACATAGTAACACAACTCAACACGAGCACACGTTGGAAACAGTCAAAAACACAAACACACACACACACACACACAGACAAACTATACACGCAACG] [+] EMBL BM605047 [CCGCGGACGCGTGGGAGAAAAGCAAAGAAAAGAAAAGAAAAAAAGCATTAAAATTAACGAAAAGCGAAGCAGAATGGAATGGAACAAAATTAGTGATAAACAGATTTAAAACAAGAAAAAAAAAAATTAAGTTCATGGTACACAAAAACTAACATGATAAGCAACACACAAACACATACAAGAAGAGAGAGGAGAGAGAGAGGGAGAGCGAAGGAGAGGGCAGGAGATGATGGTGGAAATGCAAATAGGTGGATAAGCCAGTGGAAGTCAGGAAAAGCCGATAATAAAGCATTTGTGAGTAAAGGGATGGAAAGGAGAGCAAGCAGTGTAGGATGAAGACACAGAAACACATTACACATTACGCCCATACACACATAGTAACACAACTCAACACGAGCACACGTTGGAAACAGTCAAAAACACAAACACACACACACACACACACAGACAAACTATACACGCAACG] consensusID : consensus_7533#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 136 fasta sequence [CATCATCTCCACAGCCACAGCCGCGCGCCGACCCACAACCGTCGGGTCCGACGTCTGCACGACCACGTTCACCGACGGCCCGATTGAAACGCGGGACGCGTACCGTCAGCGGGGGCGCGACCCAAACAAACACATC] [+] EMBL BX614448 [CATCATCTCCACAGCCACAGCCGCGCGCCGACCCACAACCGTCGGGTCCGACGTCTGCACGACCACGTTCACCGACGGCCCGATTGAAACGCGGGACGCGTACCGTCAGCGGGGGCGCGACCCAAACAAACACATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7533#0 GCAGAATTCGGCACGNNTGGCAGTACAATCATGATCAGCCCGGAGTTCCGGCTGACCAAG 60 consensus_7533#2 ------------------------------------------------------------ consensus_7533#3 ------------------------------------------------------------ consensus_7533#1 ------------------------------------------------------------ consensus_7533#0 AACAAGCTCTACCATGCGTACGCCGACTAAAGGGGCCCCCGAGGGGCAAACTTATCATTG 120 consensus_7533#2 ------------------------------------------------------------ consensus_7533#3 ------------------------------------------------------------ consensus_7533#1 ------------------------------------------------------------ consensus_7533#0 CCCCCCCCCCCCCTCCGCCTCCCCCTCTTTTCCCCTTTACTTCTCCCACCCCACTTATTG 180 consensus_7533#2 ------------------------------------------------------------ consensus_7533#3 ------------------------------------------------------------ consensus_7533#1 ------------------------------------------------------------ consensus_7533#0 CCTTCGAATCCCGTTTTTGTGTGTTGCAAGCGCAAATTGGGACAGGGCCAATACAACTGA 240 consensus_7533#2 ------------------------------------------------------------ consensus_7533#3 ------------------------------------------------------------ consensus_7533#1 ------------------------------------------------------------ consensus_7533#0 ACAAACCTACAACAACAATGTGTGTTTCTCATCACCACCCACCCCACCGTGTGTGTGTGT 300 consensus_7533#2 ------------------------------------------------------------ consensus_7533#3 ------------------------------------------------------------ consensus_7533#1 ------------------------------------------------------------ consensus_7533#0 GTGTGCCCAACACAGCATCAACATCACACGAGCACACCCCACCCCCCCGTTTGGCGGACC 360 consensus_7533#2 ------------------------------------------------------------ consensus_7533#3 ------------------------------------------------------------ consensus_7533#1 ------------------------------------------------------------ consensus_7533#0 GGTAGGCAGTAGCAGCGGCTGACCATTTTGTATTCCAAGAGGAGGAAGTAAACTACACGA 420 consensus_7533#2 ------------------------------------------------------------ consensus_7533#3 ------------------------------------------------------------ consensus_7533#1 ------------------------------------------------------------ consensus_7533#0 CCCACCCACCGGTACCCACCCCGCACCACCACCAAGAGCGCGCGCGCGCAGCCAGCAATT 480 consensus_7533#2 ------------------------------------------------------------ consensus_7533#3 ------------------------------------------------------------ consensus_7533#1 ------------------------------------------------------------ consensus_7533#0 ATCGAAGAAGAAAAAACAAGTGAAATAATGTGCATTTGTGTGTAATGTAAATGTGTGCAA 540 consensus_7533#2 ------------------------------------------------------------ consensus_7533#3 ------------------------------------------------------------ consensus_7533#1 ------------ATTGCCCNGAGGTTTACATGCCAAGTTCGAGAACCTGTGCATGTGATG 48 consensus_7533#0 AATTGTGCAACGAAGAAAAAGAGAAAAGCAAAGAAAAGAAAAGAAAAAAAGCATTAAAAT 600 consensus_7533#2 ------CCGCGGACGCGTGGGAGAAAAGCAAAGAAAAGAAAAGAAAAAAAGCATTAAAAT 54 consensus_7533#3 ------------------------------------------------------------ consensus_7533#1 AAGTCGGTGCTGGAGAGCAAGGTGGAGAAGNGTGATGGTGTCGAACCTGGCTGGTGGACT 108 consensus_7533#0 TAACGAAAAGCGAAGCAGAATGGAATGGAACAAAATTAATGATAAACAGATTTAAAACAA 660 consensus_7533#2 TAACGAAAAGCGAAGCAGAATGGAATGGAACAAAATTAGTGATAAACAGATTTAAAACAA 114 consensus_7533#3 ------------------------------------------------------------ consensus_7533#1 CGCCCTGCTGCATCTGTGACGTCGCAGTACTGGCTGGTCTGGCCAACATGGAGCTGCATC 168 consensus_7533#0 GAAAAAAAAAAATTAAGTTCATGGTACACAAAAACTAACATGATAAGCAACACACAAACA 720 consensus_7533#2 GAAAAAAAAAAATTAAGTTCATGGTACACAAAAACTAACATGATAAGCAACACACAAACA 174 consensus_7533#3 ------------------------------------------------------------ consensus_7533#1 ATGAATTGCTGCATGTGCTGCTGCTGTNACTCGTCGGCCATGGGCTACATTTGCTGGGCA 228 consensus_7533#0 CATACAAGAAGAGAGAGGAGAGAGAGAGGGAGAGCGAAGGAGAGGGCAGGAGATGATGGT 780 consensus_7533#2 CATACAAGAAGAGAGAGGAGAGAGAGAGGGAGAGCGAAGGAGAGGGCAGGAGATGATGGT 234 consensus_7533#3 ------------------------------------------------------------ consensus_7533#1 AGAAGCATCTCGAGATCAACCCTGGACCATGCCATCATCGAGACTGCTGCTGCCAGCTGC 288 consensus_7533#0 GGAAATGCAAATAGGTGGATAAGCCAGTGGAAGTCAGGAAAAGCCGATAATAAAGCATTT 840 consensus_7533#2 GGAAATGCAAATAGGTGGATAAGCCAGTGGAAGTCAGGAAAAGCCGATAATAAAGCATTT 294 consensus_7533#3 ------------------------------------------------------------ consensus_7533#1 TGCCGAGGCTGGACAAGAACTGATAAGTGCTGGTGAAGNGATCTGGTGATTCTTGCTGTT 348 consensus_7533#0 GTGAGTAAAGGGATGGAAAGGAGAGCAAGCAGTGTAGGATGAAGACACAGAAACACATTA 900 consensus_7533#2 GTGAGTAAAGGGATGGAAAGGAGAGCAAGCAGTGTAGGATGAAGACACAGAAACACATTA 354 consensus_7533#3 --------------CATCATCTCCACAGCCACAGCCGCGCGCCGACCCACAACCG--TCG 44 consensus_7533#1 CTGAGACTGGTGCTGCTGTCCTCCGGCTTCTC-GCTGGACTGAGCCCTGGAACCCATGCT 407 * * * * * ** * consensus_7533#0 CACATTACGCCC---ATACACACATAGTAAC--ACAAC-TCAACACGAGCACACATTGAA 954 consensus_7533#2 CACATTACGCCC---ATACACACATAGTAAC--ACAAC-TCAACACGAGCACACGTTGGA 408 consensus_7533#3 GGTCCGACGTCT---GCACGACCACGTTCACCGACGGC-CCGATTGAAACGCGGGACGCG 100 consensus_7533#1 GTCCCTGCATCTACCGCATGATCAAGCTGGGTCTGGGCATCGACGAGGACNGAGCCTGAT 467 * * * ** * * * * * * consensus_7533#0 AACAGTC-------AAAAACACAAACACACACACACACACACACAGACAAACTATACACG 1007 consensus_7533#2 AACAGTC-------AAAAACACAAACACACACACACACACACACAGACAAACTATACACG 461 consensus_7533#3 TACCGTC-------AGCGGGGGCGCGACCCAAACAAACACATC----------------- 136 consensus_7533#1 GACTGACGTGACTGAGAGCAGCAGCGGTGCTTGCTGGCTGGCTGNGCCCCAGNCGTCGGG 527 ** * * * * * * consensus_7533#0 CAACGTGTACCGATTCCTTAACTGACGAGGTAGCTCTTTTCCTCCTGTTCGTTTGTTTTT 1067 consensus_7533#2 CAACG------------------------------------------------------- 466 consensus_7533#3 ------------------------------------------------------------ consensus_7533#1 TGATGCTCCGCGCNTGGTGNACGACTCGCGAGGATCTGTCGCACATGGCAGGAGGTCGAT 587 consensus_7533#0 GAAACAAGAAAACAAATCATTGATCTTAAGCTTAGCATTGAAAGGAAGATATTTTTTGAA 1127 consensus_7533#2 ------------------------------------------------------------ consensus_7533#3 ------------------------------------------------------------ consensus_7533#1 TAAGGTGGTAACAGAAGCTTTAGTAAAGCTCTTTACAATTCGCTACACAACGTTAAGGAA 647 consensus_7533#0 AATGTTTTTCCTTCCTTCTCTTTTGTCTAAAACAAAAGCAAAACAACACACACACACAGT 1187 consensus_7533#2 ------------------------------------------------------------ consensus_7533#3 ------------------------------------------------------------ consensus_7533#1 CGCCACCACACGCCAGTCT----------------------------------------- 666 consensus_7533#0 GGTGTTCCCGGTTTTGTCTCTTTGTATAAATTATTCGAGCGCCGTGCGTTAAATACAAAA 1247 consensus_7533#2 ------------------------------------------------------------ consensus_7533#3 ------------------------------------------------------------ consensus_7533#1 ------------------------------------------------------------ consensus_7533#0 AACAGTAAAGGAAAAAACAACTAATAGCAGCGCCGCAGCAAACGAAAACAAAAGTTTATA 1307 consensus_7533#2 ------------------------------------------------------------ consensus_7533#3 ------------------------------------------------------------ consensus_7533#1 ------------------------------------------------------------ consensus_7533#0 ATT 1310 consensus_7533#2 --- consensus_7533#3 --- consensus_7533#1 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||