|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7541#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 785 fasta sequence
[CCAAGGCTGCGGAATTCCTCGAGAACTGTTGGCCTACTAACAGTCAAAATACGCGCTGCCGTGTAGGAGCAATATCAACACCACACCTAGCAGCATGGCGTCACCGTCCCAAAGCAGCCCGGCTACGGCAGCCACAGCGAACGCGA-TCGGCGGAAGCTCCAGTGCCAAGATTTCCTCCGGGGGCAGCTCTGCGGCCGGCACAACGTCCGCGTCGGGCAGCGG-TGGGACGGACAGCGCAACGCAGCTGCTAACGAAGCCGCGGCTGCAGGAGCTGGTGCGCGAAATCGATCCGACCGAGCAGCTGGACGAGGAGGTGGAAGAGCTGTTGCTACAGATAGCGGACGATTTCGTCGAGAACACCGTGAACGCAGCGTGCCTGCTGGCCAAACATCGCAAGGTGCCGAAGGTGGAAGTGCGAGACGTGCAATTGCATCTGGAACGCAACTGGAACATGTGGATACCGGGCTTCGGTACGGACGAGCTGAGACCCTACAAGCGAGCGACCGTGACAGAGGCACACAAACAGCGGTTGGCGCTCATAAGGAAGGCTATCAAGAAGTATTAGCACATCCGTTTGCCCCTAGCCGATACTTTAGAGTAATAGTAATAATCATACCTACCGCAATTCATCCTTTCTGTACTGACTGGCACACGCTCATGCCCGCGCGCGCACGCCATCTCTCACGATGTAACAAATCCCACAAAAATAAACTAAACTGCTACTATATTTACTTACGACACAAAAAAAAAAAAAAAAGGCCACATGTCCCCGGGCCGCAGGGTCC]
[-] EMBL CNS08JOO [CCAAGGCTGCGGAATTCCTCGAGAACTGTTGGCCTACTAACAGTCAAAATACGGGCTGCCGTGTAGGAGCAATATCAACACCACACCTAGCAGCATGGCGTCACCGTCCCAAAGCAGCCCGGCTACGGCAGCCACAGCGAACGCGA TCGGCGGAGGCTCCAGTGCCAAGATTTCCTCCGGGGGCCGCTCTGCGGCCGGCACAACGTCCGCGTCGGGCAGCGGAAAAAAAGAAAAAAAAAAAGCAGCTGCTAACGAAGCCGCGGCTGCAGGGGCTGGTGCGCGAAATCGATCCGACCGAGCAGCTGGACGAGGAGGTGGAAGAGCTGTTGCTACAGATAGCGGACGATTTCGTCGAGAACACCGTGAACGCAGCGTGCCTGCTGGCCAAACATCGCAAGGTGCCGAAGGTGGAAGTGCGAGACGTGCAATTGCATCTGGAACGCAACTGGAACATGTGGATACCGGGCTTCGGTACGGACGAGCTGAGACCCTACAAGCGAGCGACCGTGACAGAGGCACACAAACAGCGGTTGGCGCTCATAAGGAAGGCTATCAAGAAGTATTAGAACATCCGTTTGCCCCTAGCCGATACTTTAGAGTAATAGTAATAATCATACCTACCGCAATTCATCCTTTCTGTACTTACTGGCACACGCTCATGCCCGCGCGCGCACGCCATTTCTCACGATGTAACAAATCCCACAAAAATAAACTAAACTGCTACTATATTT ]
[+] EMBL BM605528 [ ccgGTCAACATACGCGCTGCCGTGTAGGAGCAATATCAACACCACACCTAGCAGCATGGCGTCACCGTCCCAAAGCAGCCCGGCTACGGCAGCCACAGCGAACGCGA TCGGCGGAAGCTCCAGTGCCAAGATTTCCTCCGGGGGCAGCTCTGCGGCCGGCACAACGTCCGCGTCGGGCAGCGG TGGGACGGACAGCGCAACGCAGCTGCTAACGAAGCCGCGGCTGCAGGAGCTGGTGCGCGAAATCGATCCGACCGAGCAGCTGGACGAGGAGGTGGAAGAGCTGTTGCTACAGATAGCGGACGATTTCGTCGAGAACACCGTGAACGCAGCCTGCCTGCTGGCCAAACATCGCAAGGTGCCGAAGGTGGAAGTGCGAGACGTGCAATTGCATCTGGAACGCAACTGGAACATGTGGATACCGGGCTTCGGTACGGACGAGCTGAGACCCTACAAGCGAGCGACCGTGACCGAGGCACACAAACAGCGGTTGGCGCTCATAAGGAAAGCTATCAAGAAGTATTAGCACATCCGTTTGCCCCTAGCCGATACTTTAGAGTAATAGTAATAATCATACCTACCGCAATTCATCCTTTCTGTACTGACTGGCACACGCTCATGTC CGCGCGCACGCCATCTTTCGCGATGTAA ]
[+] EMBL CNS08JO1 [ ACGCGCTG CGTGTAGGAGCAATATCAACACCACACCTAGCAGCATGGCGTCACCGTCCCAAAGCAGCCCGGCTACGGCAGCCACAGCGAACGCGATTCGGCGGAAGCTCCAGTGCCAAGATTTCCTCCGGGGGCAGCTCTGCGGCCGGCACAACGTCCGCGTCGGGCAGCGG TGGGACGGACAGCGCAACGCAGCTGCTAACGAAGCCGCGGCTGCAGGAGCTGGTGCGCGAAATCGATCCGACCGAGCAGCTGGACGAGGAGGTGGAAGAGCTGTTGCTACAGATAGCGGACGATTTCGTCGAGAACACCGTGAACGCAGCGTGCCTGCTGGCCAAACATCGCAAGGTGCCGAA GTGGAAGTGCGAGACGTGCAATTGCATCTGGAACGCAACTGGAACATGTGGATACCGGGCTTCGGTACGGACGAGCTGAGACCCTACAAGCGAGCGACCGTGACATAGGCACACAAACAGCGGTTGGCGCTCATAAGGAAGGCTATTTTTTTGTATTAGCACATCCGTTTGCCCCTAGCCGATACTTTAGAGTAATAGTAATAATCATACCTACCGCAATTCATCCTTTCTGTACTGACTGGCACACGCTCATGCCCGCGCGCGCACGCCATCTCTCACGATGTAACAAATCCCACAAAAATAAACTAAACTGCTACTAAACTTACTTACGACACAAAAAAAAAAAAAAAAGGCCACATGTCCCCGGGCCGCAGGGTCC]
[+] EMBL BX608863 [ CACACCTAGCAGCATGGCGTCACCGTCCCAAAGCATCCCGGCTACGGCAGCCACAGCGAACGCGA TCGGCGGAAGCTCCAGTGCCAAGATTTCCTCCGGGGGCAGCTCTGCGGCCGGCACAACGTCCGCGTCGGGCAGCGG TGGGACGGACAGCGCAACGCAGCTGCTAACGAAGCCGCGGCTGCAGGAGCTGGTGCGCGAAATCGATCCGACCGAGCAGCTGGACGAGGAGGTGGAAGAGCTGTTGCTACAGATAGCGGACGATTTCGTCGAGAACACCGTGAACGCAGCGTGCCTGCTGGCCAAACATCGCAAGGTGCCGAAGGTGGAAGTGCGAGACGTGCAATTGCATCTGGAACGCAACTGGAACATGTGGATACCGGGCTTCGGTACGGACGAGCTGAGACCCTACAAGCGAGCGACCGTGACCGAGGCACACAAACAGCGGTTGGCGCTCATAAGGAAAGCTATCAAGAAGTATTAGCACATCCGTTTGCCCCTAGCCGATACTTTAGAGTAATAGTAATAATCATACCTACCGCAATTCATCCTTTCTGTACTGACTGGCACACGCTCATGTCCGCGCGCGCACGCCATCTTTCACGATGTAA ]
consensusID : consensus_7541#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 743 fasta sequence
[CAAGAATCCCCCGAGGTTTCGCTGCGTGTAGGAGGTTCGTAGATTTGCGATTAATTTAATTGATGTTTTCTATGGTTTCTTTATAGCTGGCATTATGCAGCACACATAAAGTGCTTCTATAAACCCCAGAAATTAAGACAAATATGGAGTACAGCACAAAAGTGAGGCTGCAAACCCCGCAAAGCTGTTGCCTTTCTGTTGTGTTTAACTGTACTGTTTCTTCGTTCAATGGAAAACGGGAATCGTTTCGTCTAGTTATTCCTTAAATATATTGCTCTGATTGCACTTANAATGTACTATTGCTCTAATGCTCCAAAACTAAACAGCAATATCAACACACACCTAGCAGCATGGCGTCACCGTCCCAAAGCAGCCGGTACGGCAGCCACAGCGAACGCGATCGGCGGAAGCTCCAGTGCCAAGATTTCCTCCGGGGGACAGCTCTGCGGNCGGCACAACAGTCCGCGTCGGGCAGCGGATGGGACGGACAGCGCAACAGCAGCTGCTAACGAAACCGCGGACTGCAGGAGCTGGTACGCGAAATCGATCCGACCGAGCAGCTGGACCGNAGGAGGTGGAAGACGCTGTTGCTACACGCATTANCGGCACGATNTTCGTCGCAGAACCACCGTGAACCGCNNCGTGCCTTGCCTGGCCACAAACATCGCAAAGGTGCCGNAAANGTTGGACAGTGACGAGACGTGCAATTGCATCTGGNAAGCAACTGNACCATGTGGATAACC]
[+] EMBL AL694680 [CAAGAATCCCCCGAGGTTTCGCTGCGTGTAGGAGGTTCGTAGATTTGCGATTAATTTAATTGATGTTTTCTATGGTTTCTTTATAGCTGGCATTATGCAGCACACATAAAGTGCTTCTATAAACCCCAGAAATTAAGACAAATATGGAGTACAGCACAAAAGTGAGGCTGCAAACCCCGCAAAGCTGTTGCCTTTCTGTTGTGTTTAACTGTACTGTTTCTTCGTTCAATGGAAAACGGGAATCGTTTCGTCTAGTTATTCCTTAAATATATTGCTCTGATTGCACTTANAATGTACTATTGCTCTAATGCTCCAAAACTAAACAGCAATATCAACACACACCTAGCAGCATGGCGTCACCGTCCCAAAGCAGCCGGTACGGCAGCCACAGCGAACGCGATCGGCGGAAGCTCCAGTGCCAAGATTTCCTCCGGGGGACAGCTCTGCGGNCGGCACAACAGTCCGCGTCGGGCAGCGGATGGGACGGACAGCGCAACAGCAGCTGCTAACGAAACCGCGGACTGCAGGAGCTGGTACGCGAAATCGATCCGACCGAGCAGCTGGACCGNAGGAGGTGGAAGACGCTGTTGCTACACGCATTANCGGCACGATNTTCGTCGCAGAACCACCGTGAACCGCNNCGTGCCTTGCCTGGCCACAAACATCGCAAAGGTGCCGNAAANGTTGGACAGTGACGAGACGTGCAATTGCATCTGGNAAGCAACTGNACCATGTGGATAACC]
consensusID : consensus_7541#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence
[CAGAATNGCGCCCGAGGTNCGCTGCCGTGTAGGAGCAATATCAACACACACCTAGTTCAGCATGGCGTCACCGTCCCAAAGCAGCCCGGCTACGGCAGCCACAGCGAACGCGATCGGCGGAAGCTCCAGTGCCAAGATTTCCTCCGGGGGCAGCTCTGCGGCCGGCACAACGTCCGCGTCGGGCAGCGGTGGGACGGACAGCGCAACGCAGCTGCTAACGAAGCCGCGGCTGCAGGAGCTGGTACGCGAAATCGATCCGACCGAGCAGCTGGACGAGGAGGTGGAAGAGCTGTTGCTACAGATAGCGGACGATTTCGTCGAGAACACCGTGAACGCAGCGTGCCTGCTGGCCAAACATCGCAAGGTGCCGAAGNGTGGAAGTGCGAGACGTGCAATTGCATCTGGAACGCAACTGGAACATGTGGATACCGGGCTTCGGTACGGACGAGCTGAGACCCTACAAGCGAGCGACGTGACCGAGGCACACAAAC]
[+] EMBL AL697065 [CAGAATNGCGCCCGAGGTNCGCTGCCGTGTAGGAGCAATATCAACACACACCTAGTTCAGCATGGCGTCACCGTCCCAAAGCAGCCCGGCTACGGCAGCCACAGCGAACGCGATCGGCGGAAGCTCCAGTGCCAAGATTTCCTCCGGGGGCAGCTCTGCGGCCGGCACAACGTCCGCGTCGGGCAGCGGTGGGACGGACAGCGCAACGCAGCTGCTAACGAAGCCGCGGCTGCAGGAGCTGGTACGCGAAATCGATCCGACCGAGCAGCTGGACGAGGAGGTGGAAGAGCTGTTGCTACAGATAGCGGACGATTTCGTCGAGAACACCGTGAACGCAGCGTGCCTGCTGGCCAAACATCGCAAGGTGCCGAAGNGTGGAAGTGCGAGACGTGCAATTGCATCTGGAACGCAACTGGAACATGTGGATACCGGGCTTCGGTACGGACGAGCTGAGACCCTACAAGCGAGCGACGTGACCGAGGCACACAAAC]
consensusID : consensus_7541#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence
[TTATGCGTGTAGACATACACACACAACCCTTAGCAGCATGGCGTCACCGTCCCAAAGGCAGCCGGCTACGGCAGCCACAGCTGAACGCGATCGGCTGGAAGCTCCAGTGCCAAGATTTCCTCCGGGGGCAGCTCTGCGGCCGGCACAAACCCGGGTCCCCGGCAGGTTCCGGGATGGCAAGCAGCGGTGTGTGACNGTGAACATGCTGCAACTGCATGCTTGCTAAACTGAAACGCCTCGCTGTGCCTTGGCCACATGGNGGGAAANGGGCCCCTTTGGGGGGGGTTTGGGCCCCCGTGGNCCCGCGGGCAAAAAAACN]
[+] EMBL AL695825 [TTATGCGTGTAGACATACACACACAACCCTTAGCAGCATGGCGTCACCGTCCCAAAGGCAGCCGGCTACGGCAGCCACAGCTGAACGCGATCGGCTGGAAGCTCCAGTGCCAAGATTTCCTCCGGGGGCAGCTCTGCGGCCGGCACAAACCCGGGTCCCCGGCAGGTTCCGGGATGGCAAGCAGCGGTGTGTGACNGTGAACATGCTGCAACTGCATGCTTGCTAAACTGAAACGCCTCGCTGTGCCTTGGCCACATGGNGGGAAANGGGCCCCTTTGGGGGGGGTTTGGGCCCCCGTGGNCCCGCGGGCAAAAAAACN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7541#0 ------------------------------------------------------------
consensus_7541#2 ------------------------------------------------------------
consensus_7541#1 CAAGAATCCCCCGAGGTTTCGCTGCGTGTAGGAGGTTCGTAGATTTGCGATTAATTTAAT 60
consensus_7541#3 ------------------------------------------------------------
consensus_7541#0 ------------------------------------------------------------
consensus_7541#2 ------------------------------------------------------------
consensus_7541#1 TGATGTTTTCTATGGTTTCTTTATAGCTGGCATTATGCAGCACACATAAAGTGCTTCTAT 120
consensus_7541#3 ------------------------------------------------------------
consensus_7541#0 ------------------------------------------------------------
consensus_7541#2 ------------------------------------------------------------
consensus_7541#1 AAACCCCAGAAATTAAGACAAATATGGAGTACAGCACAAAAGTGAGGCTGCAAACCCCGC 180
consensus_7541#3 ------------------------------------------------------------
consensus_7541#0 ------------------------------------------------------------
consensus_7541#2 ------------------------------------------------------------
consensus_7541#1 AAAGCTGTTGCCTTTCTGTTGTGTTTAACTGTACTGTTTCTTCGTTCAATGGAAAACGGG 240
consensus_7541#3 ------------------------------------------------------------
consensus_7541#0 ----CCAAGGCTGCGGAATTCCTCGAGAACTGTTGGCCTACTAACAGTCAAAATACGC-- 54
consensus_7541#2 ------------------------------------CAGAATNGCGCCCGAGGTNCG--- 21
consensus_7541#1 AATCGTTTCGTCTAGTTATTCCTTAAATA-TATTGCTCTGATTGCACTTANAATGTACTA 299
consensus_7541#3 ------------------------------------------------------------
consensus_7541#0 --GCTGCCGTGT----------AGGAGCAATATCAACACCACACCTAG--CAGCATGGCG 100
consensus_7541#2 ---CTGCCGTGT----------AGGAGCAATATCAACAC-ACACCTAGTTCAGCATGGCG 67
consensus_7541#1 TTGCTCTAATGCTCCAAAACTAAACAGCAATATCAACAC-ACACCTAG--CAGCATGGCG 356
consensus_7541#3 ------TTATGC---------GTGTAGACATACACACACAACCCTTAG--CAGCATGGCG 43
** ** *** **** ** * *** **********
consensus_7541#0 TCACCGTCCCAAAGCAGCCCGGCTACGGCAGCCACAGC-GAACGCGATCGGC-GGAAGCT 158
consensus_7541#2 TCACCGTCCCAAAGCAGCCCGGCTACGGCAGCCACAGC-GAACGCGATCGGC-GGAAGCT 125
consensus_7541#1 TCACCGTCCCAAAGCAGCCGG--TACGGCAGCCACAGC-GAACGCGATCGGC-GGAAGCT 412
consensus_7541#3 TCACCGTCCCAAAGGCAGCCGGCTACGGCAGCCACAGCTGAACGCGATCGGCTGGAAGCT 103
************** * * *************** ************* *******
consensus_7541#0 CCAGTGCCAAGATTTCCTCCGGGGG-CAGCTCTGCGGCCGGCACAAC-GTCCGCGTCGGG 216
consensus_7541#2 CCAGTGCCAAGATTTCCTCCGGGGG-CAGCTCTGCGGCCGGCACAAC-GTCCGCGTCGGG 183
consensus_7541#1 CCAGTGCCAAGATTTCCTCCGGGGGACAGCTCTGCGGNCGGCACAACAGTCCGCGTCGGG 472
consensus_7541#3 CCAGTGCCAAGATTTCCTCCGGGGG-CAGCTCTGCGGCCGGCACAAACCCGGGTCCCCGG 162
************************* *********** ******** * * **
consensus_7541#0 CAGCGG-TGGGACGGACAGC-GCAAC--GCAGCTGCTAACGAAGCCGCGG-CTGCAGGAG 271
consensus_7541#2 CAGCGG-TGGGACGGACAGC-GCAAC--GCAGCTGCTAACGAAGCCGCGG-CTGCAGGAG 238
consensus_7541#1 CAGCGGATGGGACGGACAGC-GCAACA-GCAGCTGCTAACGAAACCGCGGACTGCAGGAG 530
consensus_7541#3 CAGGTTCCGGGATGGCAAGCAGCGGTGTGTGACNGTGAAC-ATGCTGCAA-CTGCATGC- 219
*** **** ** *** ** * * * *** * * ** ***** *
consensus_7541#0 CTGGTGCGCGAAATCGATCCGACCGAGCAGCTGGAC--GAGGAGGTGGAAGA-GCTGTTG 328
consensus_7541#2 CTGGTACGCGAAATCGATCCGACCGAGCAGCTGGAC--GAGGAGGTGGAAGA-GCTGTTG 295
consensus_7541#1 CTGGTACGCGAAATCGATCCGACCGAGCAGCTGGACCGNAGGAGGTGGAAGACGCTGTTG 590
consensus_7541#3 TTGCTAAACTGAAACGCCTCG-CTGTGC--CTTGGCCACATGGNGGGAAANGGGCCCCTT 276
** * * ** ** ** * * ** ** * * * * * * ** ** *
consensus_7541#0 CTACAGA---TAGCGG-ACGATTT-CGTCG-AGAAC-ACCGTGAAC-GCAGCGTGCCTG- 379
consensus_7541#2 CTACAGA---TAGCGG-ACGATTT-CGTCG-AGAAC-ACCGTGAAC-GCAGCGTGCCTG- 346
consensus_7541#1 CTACACGCATTANCGGCACGATNTTCGTCGCAGAACCACCGTGAACCGCNNCGTGCCTTG 650
consensus_7541#3 TGGGGGG---GGTTTG---GGCCCCCGTGG----NC--CCGCGGGCAAAAAAACN----- 319
* * *** * * *** * *
consensus_7541#0 -CTGGCCA--AACATCGCAA-GGTGCCGAA--GG-TGGA-AGTG-CGAGACGTGCAATTG 430
consensus_7541#2 -CTGGCCA--AACATCGCAA-GGTGCCGAA--GNGTGGA-AGTG-CGAGACGTGCAATTG 398
consensus_7541#1 CCTGGCCACAAACATCGCAAAGGTGCCGNAAANGTTGGACAGTGACGAGACGTGCAATTG 710
consensus_7541#3 ------------------------------------------------------------
consensus_7541#0 CATCTGGAACGCAACTGGAACATGTGGATACCGGGCTTCGGTACGGACGAGCTGAGACCC 490
consensus_7541#2 CATCTGGAACGCAACTGGAACATGTGGATACCGGGCTTCGGTACGGACGAGCTGAGACCC 458
consensus_7541#1 CATCTGGNAAGCAACTGNACCATGTGGATAACC--------------------------- 743
consensus_7541#3 ------------------------------------------------------------
consensus_7541#0 TACAAGCGAGCGACCGTGACAGAGGCACACAAACAGCGGTTGGCGCTCATAAGGAAGGCT 550
consensus_7541#2 TACAAGCGAGCGAC-GTGACCGAGGCACACAAAC-------------------------- 491
consensus_7541#1 ------------------------------------------------------------
consensus_7541#3 ------------------------------------------------------------
consensus_7541#0 ATCAAGAAGTATTAGCACATCCGTTTGCCCCTAGCCGATACTTTAGAGTAATAGTAATAA 610
consensus_7541#2 ------------------------------------------------------------
consensus_7541#1 ------------------------------------------------------------
consensus_7541#3 ------------------------------------------------------------
consensus_7541#0 TCATACCTACCGCAATTCATCCTTTCTGTACTGACTGGCACACGCTCATGCCCGCGCGCG 670
consensus_7541#2 ------------------------------------------------------------
consensus_7541#1 ------------------------------------------------------------
consensus_7541#3 ------------------------------------------------------------
consensus_7541#0 CACGCCATCTCTCACGATGTAACAAATCCCACAAAAATAAACTAAACTGCTACTATATTT 730
consensus_7541#2 ------------------------------------------------------------
consensus_7541#1 ------------------------------------------------------------
consensus_7541#3 ------------------------------------------------------------
consensus_7541#0 ACTTACGACACAAAAAAAAAAAAAAAAGGCCACATGTCCCCGGGCCGCAGGGTCC 785
consensus_7541#2 -------------------------------------------------------
consensus_7541#1 -------------------------------------------------------
consensus_7541#3 -------------------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||