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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7546#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1224 fasta sequence
[TTTTTTTTTGTAGTAGAAATCCATTTTTGTGTTTTTGCTTTATTTTGTCATACACATTAGTTCTGTATATATAAACCATACAAGCGTTGTCTCTGCTTGGTGTGTGGTTTGTGTGTGTGTGTTGTATATAATGTTCTATATAGCATGATTAATGATCGTACACCATACACCGATCGTGTACATCATATCCATTACGCGATGATTGGGAAGGTGTAAAACTGGGTTAAATTTGCACTAGCTAAAAACGAAGCTCCTTTATCCGGCAAAATGATCCTCCGTTTTTTCTTCTACTAAACGGCATTGTTTTTTTTTCAAAAAATCCTAGAAACGTCCCTTCTGGCCCTTCGGTGGTGCTTTTCTCCTACCGGACTTTTGCAACCCCCGCAACCCCTATCCAAGTACGCACTGACTTGCTCTAATGCTCCACTGGAAGGGGGGTCTTCCTTACACACTAATCAGTCTTATGTTTGCCGGCTAGAGAGAGAGCGAGAGAGCACACACACACACTGCCGAGCAGATCGGAACGTTTCCATGGTGCTAACACTACCACGCCTGCTGTTTGGTGTTTTAC-AAAAAAGGACTAAA-TTTTGTCACCAC-TTTTCTTC-TTCATCCCCTGAGGTAGCTTATAAAGTTCAAAGTGTTTTGTATTAG-AAAAAAGCCAACTTTAAATGCATTCATTTTTGGTTTTGCTCTTTCG-AAAAAAAAAACTATTTGGCAGCACTATTGTTGTATCAGTGTGTGTTTATGTTTTTT-CTACGTTAAGTTGGTAGTAGTTGGCAGTTTTTAGGTGAGTGTGTGTGTTTTTTGAGATAGTAGTTTG--CATTATCTGTAGTTGATAAGCCACTAAC-AAAGGGGGAAACTTAAATTAACCCAAAAAAGTGTTAAATCATTCCATTTCCTTCCGCTACAGGGACACCTTCTTATGTACAGGTGTGTGCTA-CCGATTGTTAGAGCTTCCGAATTATTCCACTAATCATGAAGGAAGGTACTTT-GGACTGAATGCATCCTGC-ACAACCA-TACATTCTTTGATGGTG-TGC-TGTTGCTTGGGGATATCATACAATAATTCTTTTGTTGAAATTCCGTTTCCGTTTTGTCGCAT---TTCGCACCTTTGGTTCATCTCGTTCGTACGCGTATCCGCGTATTTGTTGCTCCAACAAACCAATCTTTTAATCTCTAAATTGCCCTTTTCCTCTCTTCCTTTGCTTACTAATATTGCGCCTCCGG]
[+] EMBL AGA281450 [TTTTTTTTTGTAGTAGAAATCCATTTTTGTGTTTTTGCTTTATTTTGTCATACACATTAGTTCTGTATATATAAACCATACAAGCGTTGTCTCTGCTTGGTGTGTGGTTTGTGTGTGTGTGTTGTATATAATGTTCTATATAGCATGATTAATGATCGTACACCATACACCGATCGTGTACATCATATCCATTACGCGATGATTGGGAAGGTGTAAAACTGGGTTAAATTTGCACTAGCTAAAAACGAAGCTCCTTTATCCGGCAAAATGATCCTCCGTTTTTTCTTCTACTAAACGGCATTGTTTTTTTTTCAAAAAATCCTAGAAACGTCCCTTCTGGCCCTTCGGTGGTGCTTTTCTCCTACCGGACTTTTGCAACCCCCGCAACCCCTATCCAAGTACGCACTGACTTGCTCTAATGCTCCACTGGAAGGGGGGTCTTCCTTACACACTAATCAGTCTTATGTTTGCCGGCTAGAGAGAGAGCGAGAGAGCACACACACACACTGCCGAGCAGATCGGAACGTTTCCATGGTGCTAACACTACCACGCCTGCTGTTTGGTGTTTTAC AAAAAAGGACTAAA TTTTGTCACCAC TTTTCTTC TTCATCCCCTGAGGTAGCTTATAAAGTTCAAAGTGTTTTGTATTAG AAAAAAGCCAACTTTAAATGCATTCATTTTTGGTTTTGCTCTTTCG AAAAAAAAAACTATTTGGCAGCACTATTGTTGTATCAGTGTGTGTTTATGTTTTTT CTACGTTAAGTTGGTAGTAGTTGGCAGTTTTTAGGTGAGTGTGTGTGTTTTTTGAGATAGTAGTTTG CATTATCTGTAGTTGATAAGCCACTAAC AAAGGGGG AACTTAAATTAACCCAAAAAAGTGTTAAATCATTCCATTTCCTTCCGCTAC ]
[-] EMBL BM640558 [ CACGCCTGCTGTTTGGTGTTTTAC AAAAAAGGACTAAA TTTTGTCACTAC TTTTCTTC TTCATCCCCTGAGGTAGCTTATAAAGTTCAAAGTGTTTTGTATTAGAAAAAAAGCCAACTTTAAATGCATTCATTTTTGGTTTTGCTCTTTCG AAAAAAAAACTATTTGGCAGCACTATTGTTGTATCAGTGTGTGTTTATGTTTTAT CTA G CAAGTTTGTAGTAGTTGGCAGTTTTTAGGTGAGTGTGTGTGTTTTTTTAGATAGTAGTTTG CATTATCTGTAGTTGATAAGCCACCAGC AAAGGGGGTAACTTAAATTAACCAAAAAAAGTGTTAAATCATTCCATTTCCTTCCGCTAAAGAGACACCTTCTTATATACAGGTGTGTGCTAGCCGATTGTTAGAGCTTCCGAATTATCTCGCTAATCATGAAGAAAGGTACTTTGGGACTGAATGCATCCTGCAACAACCACTACATTCTTTGATGGTGTTGC TGTTGCTTGGGGATATCATACAATAATTCTTTTGTTGAAATTCCGTTTCCGTTTTGTCGCAT TTCGCACCTTTGGTTCATCTCGTTCGTACGCGTATCCGCGTATTTGTTGCTCCAACAAACCAATCTTTTAATCTCTAAATTGCCCTTTTCCTCTCTTCCTTTGCTTACTAATATTGCGCCTCCGG]
[-] EMBL BX619366 [ tgGTTTTACAAAAAAAGGACTAAATTTTTGTCACCACTTTTTCTTCTTTCATCCCCTGAGGTAGCTTATAAAGTTCAAAGTGTTTTGTATTAG AAAAAAGCCAACTTTAAATGCATTCATTTTTGGTTTTGCTCTTTCGAAAAAAAAAAACTATTTGGCAGCACTATTGTTGTATCAGTGTGTGTTTATGTTTTTTANTACGTTAAGTTGGTAGTAGTTGGCAGTTTTTAGGTGAGTGTGTGTGTTTTTTGAGATAGTAGTTTGAANATTATCTGTAGTTGATCAGCCACTAACTAAAGGGGGAAACTTNAATT ]
[-] EMBL BX628763 [ CATCCCCTGAGGTAGCTTATAAAGTTCAAAGTGTTTTGTATTAG AAAAAAGCCAACTTTAAATGCATTCATTTTTGGTTTTGCTCTTTCGAAAAAAAAAAACTATTTGGCAGCACTATTGTTGTATCAGTGTGTGTTTATGTTTTTT CTACGTTAAGATGGTAGTAGTTGGCAGTTTTTAGGTGAGTGTGTGTGTTTTTTGAGATAGTAGTTTG CATTATCTGTAGTTGATAAGCCACTAAC AAAGGGGGAAACTTAAATTAACCCAAAAAAGTGTTAAATCATTCCATTTCCTTCCGCTACAGGGACACCTTCTTATGTACAGGTGTGTGCTA CCGATTGTTAGAGCTTCCGAATTATTCCACTAATCATGAAGGAAGGTACTTTGGGACTGAATGCATCCTGCAACAACCACTACATTCTTTGATGGTG TGCTTGTTGCTTGGAGATATCATACAATAATTCTTTTGTTGAAATTCCGTTTCCGTTTTGTCGCATTTCTTCGCACCTTTGGTTCATCTCGTTCGTACGCGTATCCGCGTATTTGTTGCTCCAACAAACCAATCTTTTAATCTCTAAATTG ]
[-] EMBL AL932863 [ TATTAG AAAAAAGCCAACTTTAAATGCATTCATTTTTGGTTTTGCTCTTTCG AAAAAAAAAACTATTTGGCAGCACTATTGTTGTATCAGTGTGTGTTTATGTTTTTT CTACGTTAAGTTGGTAGTAGTTGGCAGTTTTTAGGTGAGTGTGTGTGTTTTTTGAGATAGTAGTTTG CATTATCTGTAGTTGATAAGCCACTAAC AAAGGGGGAAACTTAAATTAACCCAAAAAAGTGTTAAATCATTCCATTTCCTTCCGCTACAGGGACACCTTCTTATGTACAGGTGTGTGCTA CCGATTGTTAGAGCTTCCGAATTATTCCACTAATCATGAAGGAAGGTACTTT GGACTGAATGCATCCTGC ACAACCA TACATnnctggc ]
[-] EMBL AGA283055 [ GATAAGCCACTAAC AAAGGGGGAAACTTAAATTAACCCAAAAAAGTGTTAAATCATTCCATTTCCTTCCGCTACAGGGACACCTTCTTATGTACAGG ]
consensusID : consensus_7546#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence
[CCGAGGTTAACTACATTCTTTGATGGTGTGCTGTGCTTGGAGATATCATACAATAATTCTTTTGTTGAAATTCCGTTTCCGTTTTGTCGCATTTCTTCGCACCTTTGGTTCATCTCGTTCGTACGCGTATCCGCGTATTTGTTGCTCCAACAAACCAATCTTTTAATCTCTAAATTGCCCTTTTCCTCTCTTCCTTTGCTTACTAATATTGCGCCTCATGGTTTAGTAACATGTTTTGCTTCTCCTTTTTTTTCTTGCTTTAGATTAAATGATGAATATTTCTTTTGATAATCACAATGTTTTGTTTTCATTTGCTTTCTCCTTTCCGCTTTCTCTTGATTTGATTTGGTGGTGGTGATACTTGCTCCTTTACATGAGATTGGGTATCTAGTAGGTCTCACCCCCTAATAAAACGGATCGACTACATCTCAGATCGTTACCATAACAACAGAGGTGTTTGTCTAGGATAAAATAGCA]
[+] EMBL AL929980 [CCGAGGTTAACTACATTCTTTGATGGTGTGCTGTGCTTGGAGATATCATACAATAATTCTTTTGTTGAAATTCCGTTTCCGTTTTGTCGCATTTCTTCGCACCTTTGGTTCATCTCGTTCGTACGCGTATCCGCGTATTTGTTGCTCCAACAAACCAATCTTTTAATCTCTAAATTGCCCTTTTCCTCTCTTCCTTTGCTTACTAATATTGCGCCTCATGGTTTAGTAACATGTTTTGCTTCTCCTTTTTTTTCTTGCTTTAGATTAAATGATGAATATTTCTTTTGATAATCACAATGTTTTGTTTTCATTTGCTTTCTCCTTTCCGCTTTCTCTTGATTTGATTTGGTGGTGGTGATACTTGCTCCTTTACATGAGATTGGGTATCTAGTAGGTCTCACCCCCTAATAAAACGGATCGACTACATCTCAGATCGTTACCATAACAACAGAGGTGTTTGTCTAGGATAAAATAGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7546#0 TTTTTTTTTGTAGTAGAAATCCATTTTTGTGTTTTTGCTTTATTTTGTCATACACATTAG 60
consensus_7546#1 ------------------------------------------------------------
consensus_7546#0 TTCTGTATATATAAACCATACAAGCGTTGTCTCTGCTTGGTGTGTGGTTTGTGTGTGTGT 120
consensus_7546#1 ------------------------------------------------------------
consensus_7546#0 GTTGTATATAATGTTCTATATAGCATGATTAATGATCGTACACCATACACCGATCGTGTA 180
consensus_7546#1 ------------------------------------------------------------
consensus_7546#0 CATCATATCCATTACGCGATGATTGGGAAGGTGTAAAACTGGGTTAAATTTGCACTAGCT 240
consensus_7546#1 ------------------------------------------------------------
consensus_7546#0 AAAAACGAAGCTCCTTTATCCGGCAAAATGATCCTCCGTTTTTTCTTCTACTAAACGGCA 300
consensus_7546#1 ------------------------------------------------------------
consensus_7546#0 TTGTTTTTTTTTCAAAAAATCCTAGAAACGTCCCTTCTGGCCCTTCGGTGGTGCTTTTCT 360
consensus_7546#1 ------------------------------------------------------------
consensus_7546#0 CCTACCGGACTTTTGCAACCCCCGCAACCCCTATCCAAGTACGCACTGACTTGCTCTAAT 420
consensus_7546#1 ----------------------------------CCGAG-GTTAACT-ACATTCTTTGAT 24
** ** *** ** * ** * **
consensus_7546#0 GCTCCACTGGAAGGGGGGTCTTCCTTACACACTAATCAGTCTTATGTTTGCCGGCTAGAG 480
consensus_7546#1 GGTGTGCTGTGCTTGGAGATATC---ATACAATAAT---TCTTTTGTT------------ 66
* * *** ** * ** * *** **** **** ****
consensus_7546#0 AGAGAGCGAGAGAGCACACACACACACTGCCGAGCAGATCGGAACGTTTCCATGGTGCTA 540
consensus_7546#1 -GAAATTCCGTTTCCGTTTTGTCGCATTTCTTCGCACCTTTGG-----TTCATCTCGTTC 120
** * * * * ** * * *** * * * *** * *
consensus_7546#0 ACACTACCACGCCTGCTGTTTGGTGTTTTACAAAAAAGGACTAAATTTTGTCACCACTTT 600
consensus_7546#1 GTACGCGTATCCGCG-TATTTGTTGCTCCAACAAACCAATCT---TTTAATCTCTAAATT 176
** * * * * **** ** * * *** ** *** ** * * **
consensus_7546#0 TCTTCTTCATCCCCTGAGGTAGCTTATAAAGTTCAAAGTGTTTTGTATTAGAAAAAAGCC 660
consensus_7546#1 GCCCTTTTCCTCTCTTCCTTTGCTTACTAA-TATTGCGCCTCATGGTTTAGTAACATGTT 235
* ** * ** * ***** ** * * * ** **** ** * *
consensus_7546#0 AACTTTAAATGCATTCATTTTTGGTTTTGCTCTTTCGAAAAAAAAAACTATTTGGCAGCA 720
consensus_7546#1 TTGCTTC--TCCTTTTTTTTCTTGCTTTAGATTAAATGATGAATATTTCTTTTGATAATC 293
** * * ** *** * * *** * * ** * **** *
consensus_7546#0 CTATTGTTGTATCAGTGTGTGTTTATGTTTTTTCTACGTTAAGTTGGTAGTAGTTGGCAG 780
consensus_7546#1 ACAATGTTTTGTTTTCATTTGCTT-TCTCCTTTCCGCTTTCTCTTGATTTGATTTGGTGG 352
* **** * * * ** ** * * **** * ** *** * * **** *
consensus_7546#0 TTTTTAGGTGAGTGTGTGTGTTTTTTGAGATAGTAGTTTGCATTATCTGTAGTTGATAAG 840
consensus_7546#1 T-----GGTGA---TACTTGCTCCTTTACATG--AGATTGGGTATCTAGTAGGTC-TCAC 401
* ***** * ** * ** * ** ** *** * **** * * *
consensus_7546#0 CCACTAACAAAGGGGGAAACTTAAATTAACCCAAAAAAGTGTTAAATCATTCCATTTCCT 900
consensus_7546#1 CCCCTAATAAAACGGATCGACTACAT---CTCAGATCGTTACCATAACAACAGAGGTGTT 458
** **** *** ** ** ** * ** * * * * ** * * *
consensus_7546#0 TCCGCTACAGGGACACCTTCTTATGTACAGGTGTGTGCTACCGATTGTTAGAGCTTCCGA 960
consensus_7546#1 TGT-CTAGGATAAAATAGCA---------------------------------------- 477
* *** * *
consensus_7546#0 ATTATTCCACTAATCATGAAGGAAGGTACTTTGGACTGAATGCATCCTGCACAACCATAC 1020
consensus_7546#1 ------------------------------------------------------------
consensus_7546#0 ATTCTTTGATGGTGTGCTGTTGCTTGGGGATATCATACAATAATTCTTTTGTTGAAATTC 1080
consensus_7546#1 ------------------------------------------------------------
consensus_7546#0 CGTTTCCGTTTTGTCGCATTTCGCACCTTTGGTTCATCTCGTTCGTACGCGTATCCGCGT 1140
consensus_7546#1 ------------------------------------------------------------
consensus_7546#0 ATTTGTTGCTCCAACAAACCAATCTTTTAATCTCTAAATTGCCCTTTTCCTCTCTTCCTT 1200
consensus_7546#1 ------------------------------------------------------------
consensus_7546#0 TGCTTACTAATATTGCGCCTCCGG 1224
consensus_7546#1 ------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||