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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7559#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1574 fasta sequence
[CGACCCACGCGTCCGATGAAACGAACCCTTACTATCTTTAGCTGCAGCCCATCCTCTCATGTAACACAGATACGGGGTTGCATTCGTCTCGCCGATGAAGCCGCTTTCGTATAAAATATTGCTTTCTTTTCTTTGCTCTGGTACACGGGTATTATGCCCTTAGAGAGATGTGGTGCTGGATGGCCCTACATCCCGTCCATTGCGGCGCTGGAGACGCTTCCCTG--TTTTTTGCAGTACAC------AGAGTGTACTCGTCGTACCCTTTTTCGCCTCTATATCGTAAAACACTATCCACTGAACGGAGTTGCTTAATGTAGGACAGATTAGTGGTGGGAAAGAATTTAGAAGGAATTTAGAATAACTAAACACACCGAGTACTCTTCACCTTAATCATCATTACCTTAGAGATGTGCTTTCGTTTGTGTGTTTTGCAACGGGTCCTCCTTTCTTTATCTTTTTAGTTCCCTTTCGTTCCGTTTTGTGCTAACTGTTTGTCATCGTGGTTTCCTTGTGCTCTCCGACTACTCTCTAAGCGTGTTAAGTTGTTATCGTTTTCTTTTGTGTGCTATGTGTACCGTGTTCTTGTATGTGTTATTATGTTGATTATGTTGTTGCACTTCGCAAGCGTGTATGTATCGCTAAACCACCGTACACGTAGCGAAGGGGAGTTTGCTCAAACGTGAAACCCGTAACAGCTAGATCCGCGGATTAGACTAAAGGCACACGCGTACACACAAAACTTAGTATGATGTGT-T-TGTGTGTGTGTGGCAGTGTACGTGAGACAAAAGAATTAGCAAGACAACAGTAGATCAATGTCCTTA--GTGAAAGGATCATATGCTGGAGCATCACTTACCAAGACAACTTTCACGATCCTACATGATCGTCAGGCTGTATCAATACGTTGCCAACTAGACAGAGGACATGTAGGTTATGATTGTGTGCTGTGTGTGCTTCTGAGCAATGGATAATATTTTTATAGAATCATCTGCTTTTTGTTTTAATTGTTTGCACGTGCTCTAGCCGGCATGTTGGAAACAGGAAAGTTGATCAATTTGTAAAACGGTTGTGCGGCGCTAGTTGGGGAGAAATTAAGCAACATGTAAAAATATGTCCCATGTCCCAGTAGGGTTGAAATATTTATATACAAACACACACTTACACACACA-TTGAGAGTAAAGTTAGTTGTATAAAGCAGTAAGTAAATTTTGAGCGCAGTACGACGATCGTAAAGCAAAATCATGCGCTTTTTTATGGGAAGAAGAAGAGGTAGAAAGAAGGAAAGAGGCAGGAAGTAGCGTGTATAATCAATCCAATGAAACCGTATGTGTGTGTGTGTGACTGTATGTGTGCGATCATTTAATCCCTGTTAGTAATCATTTGTTACTCGTTTTGTAACCTTCCCGCAATTGGTTTAATCCCAAAGTGTGTAATGTAGTGCAGTGTAACCCGCTAGATTGAGTATGATTGAATAACGCCAAAATGGGAAGGAAAGAAAAGCAAAAGTCGTGTGTAAAAAAAACAACAGAATTATGCTGCAATGTTTTGAAAATGCAACTGGAACTGGAATGAAAATGTAG]
[+] EMBL BM644764 [CGACCCACGCGTCCGATGAAACGAACCCTTACTATCTTTAGCTGCAGCCCATCCTCTCATGTAACACAGATACGGGGTTGCATTCGTCTCGCCGATGAAGCCGCTTTCGTATAAAATATTGCTTTCTTTTCTTTGCTCTGGTACACGGGTATTATGCCCTTAGAGAGATGTGGTGCTGGATGGCCCTACATCCCGTCCATTGCGGCGCTGGAGACGCTTCCCTGTTTTTTTTGCAGTACACAGTAGTAGAGTGTACTCGTCGTACCCTTTTTCGCCTCTATATCGTAAAACACTATCCACTGAACGGAGTTGCTTAATGTAGGACAGATTAGTGGTGGGAAAGAATTTAGAAGGAATTTAGAATAACTAAACACACCGAGTACTCTTCACCTTAATCATCATTACCTTAGAGATGTGCTTTCGTTTGTGTGTTTTGCAACGGGTCCTCCTTTCTTTATCTTTTTAGTTCCCTTTCGTTCCGTTTTGTGCTAACTGTTTGTCATCGTGGGTTCCTTGTGCTCTCCGACTACTCTCTAAGCGTGT ]
[+] EMBL CNS08Y07 [ GAAACGGGGCTGCATTCGTCTCGCCGGGGAAGCCGCTTTCGTATAAAATTTTGCTTTCTTTTCTTTGCTCTGGTACACGGGTATTATGCCCTTAGAGAGATGTAGTGCTGGTTGGCCCTACATCCCGTCCATTGCGGCACTGGAAATGCTCCCCTG TTTTTTCCAGTACAC AGAGTGTACTCGTCGTACCCTTTTTCACCTCTATATCGTAAAACACTATCCACTGAACGGAGTTGCTTAATGTAGGACAGATTAGTGGTGGGAAAGAATTTAGAAGGAATTTAGAATAACTAAACACACCGAGTACTCTTCACCTTAATCATCATTACCTTAGAGATGTTTTTTCGTTTGTGTGTTTTGCAACGGGTCCTCCTTTCTTTATCTTTTTAGTTCCCTTTCGTTCCGTTTTGTGCTAACTGTTTGTCATCGTGGTTTCCTTGTGCTCTCCGACTACTCTCTAAGCGTGCTAAGTTGTTATCGTTTTCTTTTGTGTGCTATGTGTACCGTTTTCTTGTATGTGTTATTATGTTGATTATGTTGTTGCACTTCGCAAGCGTGTATGTATCGCTAAACCACCGTACACGTAGCGAAGGGGAGTTTGCTCAAACGTGAAACCCGTAACAGCTAGATCCGCGGATTAGACTAAAGGCACACGCGTACACACAAAACTTAGTATGATGTGT T TGTGTGTGTGTGGCAGTGTACGTGAGAAAAAAGAATTAGCAAGACAACAGTAGATCAATGTCCTTA GTGAAAGGATCATATGCTGGAGCATCACTTACCAAGACAACTTTCACGATCCTACATGATCGTCAGGCTGTATCAATACGTTGCCAACTAGACAGAGGACATGTAGGTTATGATTGTGTGCTGTGTGTGCTTCTGA ]
[+] EMBL BM586577 [ ccgTTTCGTTTGTGTGTTTTGCAACGGGTCCTCCTTTCTTTATCTTTTTAGTTCCCTTTCGTTCCGTTTTGTGCTAACTGTTTGTCATCGTGGTTTCCTTGTGCTCTCCGACTACTCTCTAAGCGTGTTAAGTTGTTATCGTTTTCTTTTGTGTGCTATGTGTACCGTGTTCTTGTATGTGTTATTATGTTGATTATGTTGTTGCACTTCGCAAGCGTGTATGTATCGCTAAACCACCGTACACGTAGTGAAGGGGAGTTTGCTCAAACGTGAAACCCGTAACAGCTAGAGCCGCGGATTAGACTAAAGGCACACGCGTACACACAAAACTTAGTATGATGTGTATGTGTGTGTGTGTGGCAGTGTACGTGAGACAAAAGAATTAGCAAGACAACAGTAGATCAATGTCCCTAAGGTGAAAGGATCATATGCTGGAGCATCACTCACCAAGACAACTTTCACGATCCTACATGATCGTGAGGCTGTATCAAAACGTTGCCAACTAGACAGAGGACATGTAGGTCATGATTGTGTGCTGTGTGTGCTTCTGAGCAATGGATAATATTTTTATAGAATCATCTTCTTTTTGTTTTAATTGTTTGCACGTGCTCTAGTCGGCATGTTGGAAACAGGAAAGTTGATCAATTTGTAAAACGGTTGTGCGGCGCTAGTTG ]
[+] EMBL BM600698 [ ccggTAAGTTGTTATCGTTTTCTTTTGTGTGCTATGTGTACCGTGTTCTTGTATGTGTTATTATGTTGATTATGTTGTTGCACTTCGCAAGCGTGTATGTATCGCTAAACCACCGTACACGTAGCGAAGGGGAGTTTGCTCAAACGTGAAACCCGTAACAGCTAGATCCGCGGATTAGACTAAAGGCACACGCGTACACACAAAACTTAGTATGATGTGT A TGTGTGTGTGTGGCAGTGTACGTGAGACAAAAGAATTAGCAAGACAACAGTAGATCAATGTCCTTA GTGAAAGGATCATATGCTGGAGCATCACTTACCAAGACAACTTTCACGATCCTACATGATCGTCAGGCTGTATCAATACGTTGCCAACTAGACAGAGGACATGTAGGTCACGATTGTGTGCTGTGTGTGCTTCTGAGCAATGGATAATATTTTTATAGAATCATCTGCTTTTTGTTTTAATTGTTTGCACGTGCTCTAGCCGGCATGTTGGAAACAGAAAAGTTGATCAATTTGTAAAACGGTTGTGCGGCGCTAGTTGGGGAGAAATTAAGCAACATGTAAAAATATGTCCCATGTCCCAGTAGGGTTGAAATATTTATATACAAACACACACTTACACACACAGTTGAGAGTAAAGTTAGTTGTATAAAGCAG ]
[-] EMBL CNS08Y08 [ gACACGCGTACACACAAAACTTAGTATGATGTGT T TGTGTGTGTGTGGCAGTGTACGTGAGACAAAAGAATTAGCAAGACAACAGTAGATCAATGTCCTTA GTGAAAGGATCATATGCTGGAGCATCACTTACCAAGACAACTTTCACGATCCTACATGATCGTCAGGCTGTATCAATACGTTGCCAACTAGACAGAGGACATGTAGGTTATGATTGTGTGCTGTGTGTGCTTCTGAGCAATGGATAATATTTTTATAGAATCATCTGCTTTTTGTTTTAATTGTTTGCACGTGCTCTAGCCGGCATGTTGGAAACAGGAAAGTTGATCAATTTGTAAAACGGTTGTGCGGCGCTAGTTGGGGAGAAATGAAGCAACATGTAAAAATATGTCCCATGTCCCAGTAGGTTTGAAATATTTATATACAAACACACACTCTCACACACA CAGAGAGTAAAGTTAGTTGTATAAAGCAGTAAGTAAATTTTGAGCGCAGTACGACGATCGTAAAGCAAAATCATGCGCTTTTTTATGGGAAGAAGAAGAGGTAGAAAGAAGGAAAGAGGCAGGAAGTAGCGTGTATAATCAATCCAATGAAACCGTATGTGTGTGTGTGTGACTGTATGTGTGCGATCATTTAATCCCTGTTAGTAATCATTTGTTACTCGTTTTGTAACCTTCCCGCAATTGGTTTAATCCCAAAGTGTGTAATGTAGTGCAGTGTAACCCGCTAGATTGAGTATGATTGAATAACGCCAAAATGGGAAGGAAAGAAAAGCAAAAGTCGTGTGTAAAAAAAACAACAGAATTATGCTGCAATGTTTTGAAAATGCAACTGGAACTGGAATGAAAATGTAG]
consensusID : consensus_7559#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 960 fasta sequence
[ACTGGGGACTGATTGGGCCGCTGTGCCTGTTCCTCAACCAGTACTTCAACAGCTTCCTGCCAGAGTACTACGTCCTGTGGTTCTGTTTACTCTGGTGTACCGTCGATCTGATCCGGTACTGTGGGCAGGTGTGTCTGGAAATTTGCGACTACCTGAAGATTGAGCTGTTCCGCATTCCCTACCCACCGAAGCCAGTAATGACATCACAAGGTACGAACCCTCACACAGCATCACCACCACCATAACCATCACAGTCACGATAACAAGAACGGTACGCATAGTCTAACCAATAACAACAACAGCGCAGCGACGTCCGCCCAGCAGCAGCAGCAGCAATCGATCAACAGAAAGCAAAAGCGTGCCAGCAGCAGAAAGCACAATGCCGCCGCACACTAGTGAGCGCGAGATCACAGACGAGGTCGCGCACTGGTCGTTAATATGGGGGAGAGGGGTTTGGGACGATGCTTGGTATCAGTTGTTGGGGTTTTATCTTCGAGCTAAAGGATATCCCGTCAGCAGCGTCGAGAGTTAATTGTAGTACCATTCGGAA---GGGGGGGAAGGAAAACGGAAATAAGGCACAACACGATCACCGCTTTACTATGAACACTGTTAAACTCGCAAATGCAATCCTTTCTACGCCAGGGGAATGAAGCGAACCCTTACTATCTTTAGCTGCAGCCCATCCTCTCATGTAACACAGAAACGGGGTTGCATTCGTCTCGCCGGTGAAGCCGCTTTCGTATAAAATATTGCTTTCTTTTCTTTGCTCTGGTACACGGGTATTATGCCCTTAAAGAGATGTAGTGCTGGTTGGCCCTACATCCCGTCCATTGCGGCGCTGGAGACGCTTCCCTGTTTTTTTTGCAGTACACAGTAGTAGAGTGTACTCGTCGTACCCTTTTTCGCCTCTATATCGTAAAACACTATCCACTGAACGGAGTTGCTTAATGTAGGACAGAT]
[-] EMBL CNS09EJB [ACTGGGGACTGATTGGGCCGCTGTGCCTGTTCCTCAACCAGTACTTCAACAGCTTCCTGCCAGAGTACTACGTCCTGTGGTTCTGTTTACTCTGGTGTACCGTCGATCTGATCCGGTACTGTGGGCAGGTGTGTCTGGAAATTTGCGACTACCTGAAGATTGAGCTGTTCCGCATTCCCTACCCACCGAAGCCAGTAATGACATCACAAGGTACGAACCCTCACACAGCATCACCACCACCATAACCATCACAGTCACGATAACAAGAACGGTACGCATAGTCTAACCAATAACAACAACAGCGCAGCGACGTCCGCCCAGCAGCAGCAGCAGCAATCGATCAACAGAAAGCAAAAGCGTGCCAGCAGCAGAAAGCACAATGCCGCCGCACACTAGTGAGCGCGAGATCACAGACGAGGTCGCGCACTGGTCGTTAATATGGGGGAGAGGGGTTTGGGACGATGCTTGGTATCAGTTGTTGGGGTTTTATCTTCGAGCTAAAGGATATCCCGTCAGCAGCGTCGAGAGTTAATTGTAGTACCATTCGGAA GGGGGGGAAGGAAAACGGAAATAAGGCACAACACGATCACCGCTTTACTATGAACACTGTTAAACTCGCAAATGCAAT ]
[+] EMBL BX611152 [ GGGATTGGGACGATGCTTGGTATCAGTTGTTGGGGTTTTATCTTCGAGCTAAAGGATAT CCGTCAGCAGCGTCGAAAGTTTATTGTAGTACCATTCGGAAGGGGGGGGGGAAGGAAAACGGAAATAAGGCACAACACGATCATCGCTTTACTATGAACACTGTTAAACTCGCAAATGCAATCCTTTCTACGCCAGGGGAATGAAGCGAACCCTTACTATCTTTAGCTGCAGCCCATCCTCTCATGTAACACAGAAACGGGGTTGCATTCGTCTCGCCGGTGAAGCCGCTTTCGTATAAAATATTGCTTTCTTTTCTTTGCTCTGGTACACGGGTATTATGCCCTTAAAGAGATGTAGTGCTGGTTGGCCCTACATCCCGTCCATTGCGGCGCTGGAGACGCTTCCCTGTTTTTTTTGCAGTACACAGTAGTAGAGTGTACTCGTCGTACCCTTTTTCGCCTCTATATCGTAAAACACTATCCACTGAACGGAGTTGCTTAATGTAGGACAGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7559#0 CGACCCACGCGTCCGATGAAACGAACCCTTACTATCTTTAGCTGCAGCCCATCCTCTCAT 60
consensus_7559#1 ------------------------------------------------------------
consensus_7559#0 GTAACACAGATACGGGGTTGCATTCGTCTCGCCGATGAAGCCGCTTTCGTATAAAATATT 120
consensus_7559#1 ------------------------------------------------------------
consensus_7559#0 GCTTTCTTTTCTTTGCTCTGGTACACGGGTATTATGCCCTTAGAGAGATGTGGTGCTGGA 180
consensus_7559#1 ------------------------------------------------------------
consensus_7559#0 TGGCCCTACATCCCGTCCATTGCGGCGCTGGAGACGCTTCCCTGTTTTTTGCAGTACACA 240
consensus_7559#1 ------------------------------------------------------------
consensus_7559#0 GAGTGTACTCGTCGTACCCTTTTTCGCCTCTATATCGTAAAACACTATCCACTGAACGGA 300
consensus_7559#1 ------------------------------------------------------------
consensus_7559#0 GTTGCTTAATGTAGGACAGATTAGTGGTGGGAAAGAATTTAGAAGGAATTTAGAATAACT 360
consensus_7559#1 ------------------------------------------------------------
consensus_7559#0 AAACACACCGAGTACTCTTCACCTTAATCATCATTACCTTAGAGATGTGCTTTCGTTTGT 420
consensus_7559#1 ------------------------------------------------------------
consensus_7559#0 GTGTTTTGCAACGGGTCCTCCTTTCTTTATCTTTTTAGTTCCCTTTCGTTCCGTTTTGTG 480
consensus_7559#1 ---------ACTGGGGACTGATTGGGCCGCTGTGCCTGTTCC---TCAACCAGTACTTCA 48
* *** ** ** * ***** ** * ** *
consensus_7559#0 CTAACTGTTTGTCATCGTGGTTT-CCTTGTGCTCTCCGACTACTCTCTAAGCGTGTTAAG 539
consensus_7559#1 ACAGCTTCCTGCCAGAGTACTACGTCCTGTGGT-TCTGTTTACTCTG-----GTGTACCG 102
* ** ** ** ** * * **** * ** * ****** **** *
consensus_7559#0 TTGTTATCGTTTTCTTTTGTGTGCTATGTGTACCGTGTTCTTGTATGTGTTATTATGTTG 599
consensus_7559#1 TCGATCTGATCCGGTACTGTGGGC-AGGTGTGTCTGGAAATT---TGCGACTACCTGAAG 158
* * * * * * **** ** * **** * * ** ** * ** *
consensus_7559#0 ATTATGTTGTTGCACTTCGCAAGCGTGTATGTATCGCTAAACCACCGTACACGTAGCGAA 659
consensus_7559#1 ATTGAGCTGTTCCGCATTCCCTACCCACCGAAGCCAGTAA-TGACATCACAAGGTACGAA 217
*** * **** * * * * * * *** ** *** * ****
consensus_7559#0 GGGGAGTTTGCTCA--AACGTGAAACCCGTAACAGCTAGATCCGCGGATTAGACTAAAGG 717
consensus_7559#1 ----CCCTCACACAGCATCACCACCACCATAACCATCACAGTCACG-ATAACAAGAACGG 272
* * ** * * * ** **** * * * ** ** * * ** **
consensus_7559#0 CACACGC-GTACACACAAAACTTAGTATGATGTGTTTGTGTGTGTGTGGCAGTGTACGTG 776
consensus_7559#1 TACGCATAGTCTAACCAATAACAACAACAGCGCAGCGACGTCCGCCCAGCAGCA---GCA 329
** * ** * *** * * * * ** * **** *
consensus_7559#0 AGACAAAAGAATTAGCAAGACAACAGTAGATCAATGTCCTTAGT-GAAAGGATCATATGC 835
consensus_7559#1 GCAGCAATCGATCAACAGAA----AGCAAAAGCGTGCCAGCAGCAGAAAGCACAATGCCG 385
* ** ** * ** * ** * * ** * ** ***** * **
consensus_7559#0 TGGAGCATCACTTACCAAGACAACTTTCACGATCCTACATGATCGTCAGGCTGTATCAAT 895
consensus_7559#1 CCGCACACTAGTGAGCGCGAGATCACAGACGAGGTCGCGCACTGGTCG-------TTAAT 438
* ** * * * * ** * * **** * * *** * ***
consensus_7559#0 ACGTTGCCAACTAGACAGAGGACATGTAGGTTATGATTGTGTGCTGTGTGTGCTTCTGAG 955
consensus_7559#1 ATGGGGGAGAGGGGTTTGGGACGATGCTTGGTATCAGT-TGTTGGGGTTTTATCTTCGAG 497
* * * * * * * *** * *** * * *** * * * * ***
consensus_7559#0 CAATGGATAATATTTTTATAGAATCATCTGCTTTTTGTTTTAATTGTTTGCACGTGCTCT 1015
consensus_7559#1 C--TAAAGGATATCCC------GTCAGCAGCGTCGAGAGTTAATTGTA-------GTACC 542
* * * **** *** * ** * * ******** * *
consensus_7559#0 AGCCGGCATGTTGGAAACAGGAAAGTTGATCAATTTGTAAAACGGTTGTGCGGCGCTAGT 1075
consensus_7559#1 ATTCGGAAGGGGGGGAA-GGAAAACGGAAATAAGGCACAACACGATCA--CCGCTTTACT 599
* *** * * ** ** * *** * ** ** *** * * ** ** *
consensus_7559#0 TGGGGAGAAATTAAGCAACATGTAAAAATATGTCCCATGTCCCAGTAGGGTTGAAATATT 1135
consensus_7559#1 ATGAACACTGTTAA---ACTCGCAAATGCAATCCTTTCTACGCCAGGGGAATGAAGCGAA 656
* **** ** * *** * * * * ** ****
consensus_7559#0 TATATACAAACACACACTTACACACACATTGAGAGTAAAGTTAGTTGTATAAAGCAGTAA 1195
consensus_7559#1 CCCTTACTATCTTTAGCTGCAGCCCATCCTC----TCATGTAACACAGAAACGGGGTTGC 712
*** * * ** * ** * * * ** * * * * *
consensus_7559#0 GTAAATTTTGAGCGCAGTACGACGATCGTAAAGCAAAATCATGCGCTTTTTTATGGGAAG 1255
consensus_7559#1 ATTCGTCTCGCCGGTGAAGCCGCTTTCGTATAA-AATATTGCTTTCTTTTCTTTGCTCTG 771
* * * * * * * ***** * ** ** ***** * ** *
consensus_7559#0 AAGAAGAGGTAGAAAGAAGG-AAAGAGGCAGGAAGTAGCGTGTATAATCAATCCAATGAA 1314
consensus_7559#1 GTACACGGGTATTATGCCCTTAAAGAGATGTAGTGCTGGTTGGCCCTACATCCCGTCCAT 831
* **** * * ****** * * ** ** ** *
consensus_7559#0 ACCGTATGTGTGTGTGTGTGACTGTATGTGTGCGATCATTTAATCCCTGTTAGTAATCAT 1374
consensus_7559#1 TGCGGCGCTGGAGACGCTTCCCTGTTTTTTTTGCAGTACACAGTAGTAGAGTGTACTCGT 891
** ** * * **** * * * * * * * * *** ** *
consensus_7559#0 TTGTTACTCGTTTTGTAACCTTCCCGCAATTGGTTTAATCCCAAAGTGTGTAATGTAGTG 1434
consensus_7559#1 C-GTACCCTTTTTCGCCTCTATATCGTAAAACACTATCCACTGAACGGAGTTGCTTAATG 950
** * *** * * * ** ** * * ** * ** ** **
consensus_7559#0 CAGTGTAACCCGCTAGATTGAGTATGATTGAATAACGCCAAAATGGGAAGGAAAGAAAAG 1494
consensus_7559#1 TAGGACAGAT-------------------------------------------------- 960
** *
consensus_7559#0 CAAAAGTCGTGTGTAAAAAAAACAACAGAATTATGCTGCAATGTTTTGAAAATGCAACTG 1554
consensus_7559#1 ------------------------------------------------------------
consensus_7559#0 GAACTGGAATGAAAATGTAG 1574
consensus_7559#1 --------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||