These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7569#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1346 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGGAAATGTTCTGCCGACTATGGAGTGTCGCAATGCCCTATATGTTGCAGTTGGAAAATTTTACCATTTCGCGGAAGTTAATAGACCTCCTAACTGAGCCTAGAAATTTAACTATATATCAACTACTTCAGCATTTTAATGGCAGTCTATATTACGCCAAAATTCTTTCGCCTAAATGTAGGGCCTTCGGTATATACCAAACCTCCCATAACTTTAAAGTTGTTTGTAATACGCACGATCTAGGCAGGCTCGCAATGTGTACGCTCTTCGGCGAGCAAACAGTAAAGGCGCTGCTGTCTCCACATGAAACTCAGTTCACCAGTTTGATGGAGCGATTGCGCACAAGCATTTTTAAATCGCGCGGCGTTTTTAAAGGTGTCGTTAATGGTGTGCCAATATTCAATCATCAACTGTTTGTGGAACTGTACGCGGCATCTTGGCTATCGGAAAATCTTCTATCGCCCAAGGTAGCGTCCTTTTACCGAACGCATGTGCACCCATCGATGGGAAGGGTGAGAACGCTTTTGGACAGTATAGTCATAAGCAAATGTACATACTTGACACTGGAAACGGGAGCGCCGCACGGTATACGGCGTGCGTATAGACAGTTTCCACACCATATCCAGCCCAATGTAGTGGATGAGTTAGGCCATAGTCCAGACGCGTTGTTTCTGGCAGACACGCTTAGCACGGTGTATAATACGGGCGTAGGGGCCAACCATTTGCTTAATTGGTTAGAGATCATGCAGCATGCACCAGCGGTCGGTACCCTATTCAGTACCGTTGTATTCAAAGCGGCACCGATCGATGTTGCGATGCGACATGGTTGTGCAGAAGCCACTGAACGGCTTGTCGGTTCAGCCTTTCGTCCCACTGCATTCGACGAGTACGCGAACGTTCCGAACACCCGCAAATGGAACGTGCTTAGCCATTGCCGTACGCTGATATGCCGGGACGGTGCAGCCAAGCTGGAGCAGTATGTTTTCAAACAGCTGTACGATGAATTTACCAAGACCTCCTCATTCGACGGTTGGTTGGGTGTTAACGCCTTTACACATGTTTTGCATCCAGACCTTTTCACGCCTAGGAAATTTCATTTATTCGACACTTGGCGTATGAAACAGCAGCAAAGCATCTGGTACCTTTGCTTTTTTATTGATGCACCCCAGTTGATCGGGGACATGGTACGCACAATGAATGTGCTGGAAGGGACAAACGTTGTCACGCGATTGAAGGAGGTAAAGTCGAATAACCAGCCGGTAAGGGTGTTGCTCGCTCGTGTCGANGAGCGTAATGCTTCNCGCAACCTGATGATTTACT] [+] EMBL BM605954 [CCGCCCACGCGTCCGCCCACGCGTCCGGGAAATGTTCTGCCGACTATGGAGTGTCGCAATGCCCTATATGTTGCAGTTGGAAAATTTTACCATTTCGCGGAAGTTAATAGACCTCCTAACTGAGCCTAGAAATTTAACTATATATCAACTACTTCAGCATTTTAATGGCAGTCTATATTACGCCAAAATTCTTTCGCCTAAATGTAGGGCCTTCGGTATATACCAAACCTCCCATAACTTTAAAGTTGTTTGTAATACGCACGATCTAGGCAGGCTCGCAATGTGTACGCTCTTCGGCGAGCAAACAGTAAAGGCGCTGCTGTCTCCACATGAAACTCAGTTCACCAGTTTGATGGAGCGATTGCGCACAAGCATTTTTAAATCGCGCGGCGTTTTTAAAGGTGTCGTTAATGGTGTGCCAATATTCAATCATCAACTGTTTGTGGAACTGTACGCGGCATCTTGGCTATCGGAAAATCTTCTATCGCCCAAGGTAGCGTCCTTTTACCGAACGCATGTGCACCCATCGATGGGAAGGGTGAGAACGCTTTTGGACAGTATAGTCATAAGCAAATGTACATACTTGACACTGGAAACGGGAGCGCCGCACGGTATACGGCGTGCGTATAGACAGTTTCCA ] [+] EMBL BM577141 [ ccgCGCTCTTCGGCGAGCAAACAGTAAAGGCGCTGCTGTCTCCACATGAAACTCAGTTCACCAGTTTGATGGAGCGATTGCGCACAAGCATTTTTAAATCGCGCGGCGTGTTTAAAGGTGTCGTTAATGGTGTGCCAATATTCAATCATCAACTGTTTGTGGAACTGTACGCGGCATCTTGGCTATCGGAAAATCTTCTATCGCCCAAGGTAGCGTCCTTTTACCGAACGCATGTGCACCCATCGATGGGAAGGGTGAGAACGCTTTTGGACAGTATAGTCATAAGCAAATGTACATACTTGACACTGGAAACGGGAGCGCCGCACGGCATACGGCGTGCGTATAGACAGTTTCCACACCATATCCAGCCCAATGTAGTGGATGAGTTAGGCCATAGTCCAGACGCGTTGTTTCTGGCAGACACGCTTAGCACGGTGTATAATACGGGCGTAGGGGCCAACCATTTGCTTAATTGGTTAGAGATCATGCAGCATGCACCAGCGGTCGGTACCCTATTCAGTACCGTTGTATTCAAAGCGGCACCGATCGATGTTGCGATGCGACATGGTTGTGCAGAAGCCACTGAACGGCTTGTCGGTTCAGCCTTTCGTCCCACTGCATTCGACGAGTACACGAACGTTCCGAACACCCGCAAATGGAACGTGCTTA ] [+] EMBL BX621903 [ GTGTCGTTAATGGTGTGCCAATATTCAATCATCAACTGTTTGTGGAACTGTACGCGGCATCTTGGCTATCGGAAAATCTTCTATCGCCCAAGGTAGCGTCCTTTTACCGAACGCATGTGCACCCATCGATGGGAAGGGTGAGAACGCTTTTGGACAGTATAGTCATAAGCAAATGTACATACTTGACACTGGAAACGGGAGCGCCGCACGGTATACGGCGTGCGTATAGACAGTTTCCACACCATATCCAGCCCAATGTAGTGGATGAGTTAGGCCATAGTCCAGACGCGTTGTTTCTGGCAGACACGCTTAGCACGGTGTATAATACGGGCGTAGGGGCCAACCATTTGCTTAATTGGTTAGAGATCATGCAGCATGCACCAGCGGTCGGTACCCTATTCAGTACCGTTGTATTCAAAGCGGCACCGATCGATGTTGCGATGCGACATGGTTGTGCAGAAGCCACTGAACGGCTTGTCGGTTCAGCCTTTCGTCCCACTGCATTCGACGAGTACGCGAACGTTCCGAACACCCGCAAATGGAACGTGCTTAGCCATTGCCGTACGCTGATATGCCGGGACGGTGCAGCCAAGCTGGAGCAGTATGTTTTCAAACAGCTGTACGATGAATTTACCAAGACCTCCTCATTCGACGGTTGGTTGGGTGTTAACGCCTTTACACATGTTTTGCATCCAGACCTTTTCACGCCTAGGAAATTTCATTTATTCGACACTTGGCGTATGAAACAGCAGCAAAGCATCTGGTACCTTTGCTTTTTTATTGATGCACCCCAGTTGATCGGGGACATGGTACGCA ] [+] EMBL BX618897 [ CGGTATACGGCGTGCGTATAGACAGTTTCCACACCATATCCAGCCCAATGTAGTGGATGAGTTAGGCCATAGTCCAGACGCGTTGTTTCTGGCAGACACGCTTAGCACGGTGTATAATACGGGCGTAGGGGCCAACCATTTGCTTAATTGGTTAGAGATCATGCAGCATGCACCAGCGGTCGGTACCCTATTCAGTACCGTTGTATTCAAAGCGGCACCGATCGATGTTGCGATGCGACATGGTTGTGCAGAAGCCACTGAACGGCTTGTCGGTTCAGCCTTTCGTCCCACTGCATTCGACGAGTACGCGAACGTTCCGAACACCCGCAAATGGAACGTGCTTAGCCATTGCCGTACGCTGATATGCCGGGACGGTGCAGCCAAGCTGGAGCAGTATGTTTTCAAACAGCTGTACGATGAATTTACCAAGACCTCCTCATTCGACGGTTGGTTGGGTGTTAACGCCTTTACACATGTTTTGCATCCAGACCTTTTCACGCCTAGGAAATTTCATTTATTCGACACTTGGCGTATGAAACAGCAGCAAAGCATCTGGTACCTTTGCTTTTTTATTGATGCACCCCAGTTGATCGGGGACATGGTACGCACAATGAATGTGCTGGAAGGGACAAACGTTGTCACGCGATTGAAGGAGGTAAAGTCGAATAACC ] [+] EMBL BX620660 [ TCCAGCCCAATGTAGTGGATGAGTTAGGCCATAGTCCAGACGCGTTGTTTCTGGCAGACACGCTTAGCACGGTGTATAATACGGGCGTAGGGGCCAACCATTTGCTTAATTGGTTAGAGATCATGCAGCATGCACCAGCGGTCGGTACCCTATTCAGTACCGTTGTATTCAAAGCGGCACCGATCGATGTTGCGATGCGACATGGTTGTGCAGAAGCCACTGAACGGCTTGTCGGTTCAGCCTTTCGTCCCACTGCATTCGACGAGTACGCGAACGTTCCGAACACCCGCAAATGGAACGTGCTTAGCCATTGCCGTACGCTGATATGCCGGGACGGTGCAGCCAAGCTGGAGCAGTATGTTTTCAAACAGCTGTACGATGAATTTACCAAGACCTCCTCATTCGACGGTTGGTTGGGTGTTAACGCCTTTACACATGTTTTGCATCCAGACCTTTTCACGCCTAGGAAATTTCATTTATTCGACACTTGGCGTATGAAACAGCAGCAAAGCATCTGGTACCTTTGCTTTTTTATTGATGCACCCCAGTTGATCGGGGACATGGTACGCACAATGAATGTGCTGGAAGGGACNAACGTTGTCACGCGATTGAAGGAGGTAAAGTCGAATAACCAGCCGGTAAGGGTGTTGCTCGCTCGTGTCGANGAGCGTAATGCTTCNCGCAACCTGATGATTTACT] [+] EMBL BX617983 [ TCAGTACCGTTGTATTCAAAGCGGCACCGATCGATGTTGCGATGCGACATGGTTGTGCAGAAGCCACTGAACGGCTTGTCGGTTCAGCCTTTCGTCCCACTGCATTCGACGAGTACGCGAACGTTCCGAACACCC ] consensusID : consensus_7569#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence [AGGCAAGAATCGCCACGAGGTTGTAGTTAGGCCATAGTCCAGACGCGTTGTTTCTTGGCAGACACGCTTAGCACGGTGTATAATACGGGCGTAGGGGCCAACCATTTGCTTAATTGGTTAGAGATCATGCAGCATGCACCAGCGGTCGGTACCCTATTCAGTACCGTTGTATTCAAAGCGGCACCGATCGATGTTGCGATGCGACATGGTTGTGCAGAAGCCACTGAACGGCTTGTCGGTTCAGCCTTTCGTCCCACTGCATTCGACGAGTACGCGAANGTTCCGAACACCCGCAAATGGAACGTGCTTAGCCATTGCCGTACGCTGATATAGCCGGGACGGTGCAGCCAAGCTGGGAGCAGGTATAGTTTCTCAAACAG] [+] EMBL BX466591 [AGGCAAGAATCGCCACGAGGTTGTAGTTAGGCCATAGTCCAGACGCGTTGTTTCTTGGCAGACACGCTTAGCACGGTGTATAATACGGGCGTAGGGGCCAACCATTTGCTTAATTGGTTAGAGATCATGCAGCATGCACCAGCGGTCGGTACCCTATTCAGTACCGTTGTATTCAAAGCGGCACCGATCGATGTTGCGATGCGACATGGTTGTGCAGAAGCCACTGAACGGCTTGTCGGTTCAGCCTTTCGTCCCACTGCATTCGACGAGTACGCGAANGTTCCGAACACCCGCAAATGGAACGTGCTTAGCCATTGCCGTACGCTGATATAGCCGGGACGGTGCAGCCAAGCTGGGAGCAGGTATAGTTTCTCAAACAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7569#0 CCGCCCACGCGTCCGCCCACGCGTCCGGGAAATGTTCTGCCGACTATGGAGTGTCGCAAT 60 consensus_7569#1 ------------------------------------------------------------ consensus_7569#0 GCCCTATATGTTGCAGTTGGAAAATTTTACCATTTCGCGGAAGTTAATAGACCTCCTAAC 120 consensus_7569#1 ------------------------------------------------------------ consensus_7569#0 TGAGCCTAGAAATTTAACTATATATCAACTACTTCAGCATTTTAATGGCAGTCTATATTA 180 consensus_7569#1 ------------------------------------------------------------ consensus_7569#0 CGCCAAAATTCTTTCGCCTAAATGTAGGGCCTTCGGTATATACCAAACCTCCCATAACTT 240 consensus_7569#1 ------------------------------------------------------------ consensus_7569#0 TAAAGTTGTTTGTAATACGCACGATCTAGGCAGGCTCGCAATGTGTACGCTCTTCGGCGA 300 consensus_7569#1 ------------------------------------------------------------ consensus_7569#0 GCAAACAGTAAAGGCGCTGCTGTCTCCACATGAAACTCAGTTCACCAGTTTGATGGAGCG 360 consensus_7569#1 ------------------------------------------------------------ consensus_7569#0 ATTGCGCACAAGCATTTTTAAATCGCGCGGCGTTTTTAAAGGTGTCGTTAATGGTGTGCC 420 consensus_7569#1 ------------------------------------------------------------ consensus_7569#0 AATATTCAATCATCAACTGTTTGTGGAACTGTACGCGGCATCTTGGCTATCGGAAAATCT 480 consensus_7569#1 ------------------------------------------------------------ consensus_7569#0 TCTATCGCCCAAGGTAGCGTCCTTTTACCGAACGCATGTGCACCCATCGATGGGAAGGGT 540 consensus_7569#1 ------------------------------------------------------------ consensus_7569#0 GAGAACGCTTTTGGACAGTATAGTCATAAGCAAATGTACATACTTGACACTGGAAACGGG 600 consensus_7569#1 ------------------------------------------------------------ consensus_7569#0 AGCGCCGCACGGTATACGGCGTGCGTATAGACAGTTTCCACACCATATCCAGCCCAATGT 660 consensus_7569#1 ---------------------------------------AGGCAAGAATCGCCACGAGGT 21 * * * * * * * * ** consensus_7569#0 AGTGGATGAGTTAGGCCATAGTCCAGACGCGTTGTTTCT-GGCAGACACGCTTAGCACGG 719 consensus_7569#1 TGT-----AGTTAGGCCATAGTCCAGACGCGTTGTTTCTTGGCAGACACGCTTAGCACGG 76 ** ******************************* ******************** consensus_7569#0 TGTATAATACGGGCGTAGGGGCCAACCATTTGCTTAATTGGTTAGAGATCATGCAGCATG 779 consensus_7569#1 TGTATAATACGGGCGTAGGGGCCAACCATTTGCTTAATTGGTTAGAGATCATGCAGCATG 136 ************************************************************ consensus_7569#0 CACCAGCGGTCGGTACCCTATTCAGTACCGTTGTATTCAAAGCGGCACCGATCGATGTTG 839 consensus_7569#1 CACCAGCGGTCGGTACCCTATTCAGTACCGTTGTATTCAAAGCGGCACCGATCGATGTTG 196 ************************************************************ consensus_7569#0 CGATGCGACATGGTTGTGCAGAAGCCACTGAACGGCTTGTCGGTTCAGCCTTTCGTCCCA 899 consensus_7569#1 CGATGCGACATGGTTGTGCAGAAGCCACTGAACGGCTTGTCGGTTCAGCCTTTCGTCCCA 256 ************************************************************ consensus_7569#0 CTGCATTCGACGAGTACGCGAACGTTCCGAACACCCGCAAATGGAACGTGCTTAGCCATT 959 consensus_7569#1 CTGCATTCGACGAGTACGCGAANGTTCCGAACACCCGCAAATGGAACGTGCTTAGCCATT 316 ********************** ************************************* consensus_7569#0 GCCGTACGCTGATAT-GCCGGGACGGTGCAGCCAAGCTGG-AGCAG---TATGTTTTCAA 1014 consensus_7569#1 GCCGTACGCTGATATAGCCGGGACGGTGCAGCCAAGCTGGGAGCAGGTATAGTTTCTCAA 376 *************** ************************ ***** ** ** **** consensus_7569#0 ACAGCTGTACGATGAATTTACCAAGACCTCCTCATTCGACGGTTGGTTGGGTGTTAACGC 1074 consensus_7569#1 ACAG-------------------------------------------------------- 380 **** consensus_7569#0 CTTTACACATGTTTTGCATCCAGACCTTTTCACGCCTAGGAAATTTCATTTATTCGACAC 1134 consensus_7569#1 ------------------------------------------------------------ consensus_7569#0 TTGGCGTATGAAACAGCAGCAAAGCATCTGGTACCTTTGCTTTTTTATTGATGCACCCCA 1194 consensus_7569#1 ------------------------------------------------------------ consensus_7569#0 GTTGATCGGGGACATGGTACGCACAATGAATGTGCTGGAAGGGACAAACGTTGTCACGCG 1254 consensus_7569#1 ------------------------------------------------------------ consensus_7569#0 ATTGAAGGAGGTAAAGTCGAATAACCAGCCGGTAAGGGTGTTGCTCGCTCGTGTCGANGA 1314 consensus_7569#1 ------------------------------------------------------------ consensus_7569#0 GCGTAATGCTTCNCGCAACCTGATGATTTACT 1346 consensus_7569#1 -------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||