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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7576#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1009 fasta sequence
[CACCGNGCNGANTCGTTATGAGCTCGAGGCAGAATCGCCAGAGGTCTTAGCGCAAAAAGTGGAAATTATTGGGCGAGTAACAATGATAAAAATTAGACGAAGGGAATGAAATATTCACATTAAAATCCCAGGTTAACAACAGAGAGCCNTCTGACGTTAATGCGTCTGGACAGTAGGACACACTTCGGGTACTACTAGCAACCCACGAAGCAGAGCGACAGCCAAGATTTAANAGGGTTTTTACCCTCGGGGATACAACCGTTTGGAGCCACCCTCTTGGTGTTTAAGGGCAACNTTATTGAAGCGCCATGGCAATTCCCCCATACGGTCGGCACACTTAGTTTGGCCCTTATTTTCCCCCAAAAACCAGGTTTGATCCAGCCCCGTTGTTGCTATTCTGAGTGTCCCCCCCGGATTCCGATTCGGGTAATACCCGAGACAGACAGCGTTTCAACAGGATAGACCGGAAAACGACAACGTTTATACACACACTTAAANGATTCGCGACAAAGTCGTCNATCATAGTTCGAGACCNGACTTNGGCTTGGGTTGGTTTTNAAAACCCACGGTAGACGCATCTTCAAAGGCCTATTGGCCCAGACCTGTTTTCCCCAACCTTGGATAATCCCGGCGAATGCTNTNTAATGGTTACCAAGAGGCTTAACCACACGNTAATTCAGGCCGGTCGTAGGAGGAACACCCCAACNACCAAAAGGCCCCCAAAGGCGGGGAAAACCCAACCCCAGGCAANCTATCGGAGNGACCCGGACACAGGAAAACGAAGGGTCTTGTTGGAANAAAAANTCGCCCAACATTTNGCCAAAAGCACCAGAACGGGCGTTCACANCATGGGCGCGNACATTAAATCACACGTNGGGAAGTAAAACAAGACGTGGAAATTTNATACAGACACGGTANCCTCTNAAAANCCGAGGCACACCGAGGAACTTTCNAATCAACAGTCGAAAAGGACCCCTATTACCAGAACACTTTGCAGACTGCTGAGTTT]
[+] EMBL AL696594 [CACCGNGCNGANTCGTTATGAGCTCGAGGCAGAATCGCCAGAGGTCTTAGCGCAAAAAGTGGAAATTATTGGGCGAGTAACAATGATAAAAATTAGACGAAGGGAATGAAATATTCACATTAAAATCCCAGGTTAACAACAGAGAGCCNTCTGACGTTAATGCGTCTGGACAGTAGGACACACTTCGGGTACTACTAGCAACCCACGAAGCAGAGCGACAGCCAAGATTTAANAGGGTTTTTACCCTCGGGGATACAACCGTTTGGAGCCACCCTCTTGGTGTTTAAGGGCAACNTTATTGAAGCGCCATGGCAATTCCCCCATACGGTCGGCACACTTAGTTTGGCCCTTATTTTCCCCCAAAAACCAGGTTTGATCCAGCCCCGTTGTTGCTATTCTGAGTGTCCCCCCCGGATTCCGATTCGGGTAATACCCGAGACAGACAGCGTTTCAACAGGATAGACCGGAAAACGACAACGTTTATACACACACTTAAANGATTCGCGACAAAGTCGTCNATCATAGTTCGAGACCNGACTTNGGCTTGGGTTGGTTTTNAAAACCCACGGTAGACGCATCTTCAAAGGCCTATTGGCCCAGACCTGTTTTCCCCAACCTTGGATAATCCCGGCGAATGCTNTNTAATGGTTACCAAGAGGCTTAACCACACGNTAATTCAGGCCGGTCGTAGGAGGAACACCCCAACNACCAAAAGGCCCCCAAAGGCGGGGAAAACCCAACCCCAGGCAANCTATCGGAGNGACCCGGACACAGGAAAACGAAGGGTCTTGTTGGAANAAAAANTCGCCCAACATTTNGCCAAAAGCACCAGAACGGGCGTTCACANCATGGGCGCGNACATTAAATCACACGTNGGGAAGTAAAACAAGACGTGGAAATTTNATACAGACACGGTANCCTCTNAAAANCCGAGGCACACCGAGGAACTTTCNAATCAACAGTCGAAAAGGACCCCTATTACCAGAACACTTTGCAGACTGCTGAGTTT]
consensusID : consensus_7576#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 931 fasta sequence
[CCGATGACATAACATCAAAACATCAACAAAGGTGCTCTTGCGCAAAAAGTGGAAATTATTGGGCGAGTAAAATGATAAAAATTAGACGAAGGGAATGAAATATTACATTAAAATCCAGTAACAACAACTGTAGTTAAGAATGTTGACAAACATAGTT-CGTACTGCCTGTAGATTACCGATCAGGAATGTGCTTTCCAACGTTGATCGCCCGTGTTTATCGGGTCCCCCGGTTCGATGGTTTACCGGCAAAGGTTACGATGCGGAACGAAAGTTTAAAAT-AAGA-TC-GACAGTGTATTATGTGG-CCGC-TGCTGGTG-TTTTAACCGTAGGATTAAGCTATGCCGCCGTTCCACTGTATCGGATGTTTTGTCAGGCTTACAGCTATGGCGGGACCACCAGCCAGGGACACGATGGCG-AGAAGGTTGAAAGCATGCAAAAGGTAAAGGATAGAGTGATAAAGATAAAGTTTAACGCCGATATAGGAGCCTCGATGCGGTGGAACTTTAAACCTCAGCAAACCGAAATCAGGGTTGTTCCGGGTGAAACCGCATTGGCGTTCTACTCGGCCAAAAATCCGACGGACCATCCGGTTGTTGGGATCAGCACCTATAATGTGATTCCATTCGAGGCTGGCGCGTACTTCAACAAAATACAGTGCTTTTGCTTCGAGGAGCAGCAGCTCAATCCACACGAAGAGGTT-GACTTGCCGGTGTTCTTCTACATCGATCCGGATTTTATAGAGGAGCCTAAGATGGAACTGGTAGACTCAATTACGCTATCGTACACA-TTCTTCGAGTCAAAGGATGGCGTGAACATACAAATGCCGGTGTATGCAAAACAGCATGGNTAAACAAGGATGTGTTAGTTTTTG-AATGATGTTAAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAATNANACAAAAAGGACGGACTGT]
[+] EMBL BM583816 [CCGATGACATAACATCAAAACATCAACAAAGGTGCTCTTGCGCAAAAAGTGGAAATTATTGGGCGAGTAAAATGATAAAAATTAGACGAAGGGAATGAAATATTACATTAAAATCCAGTAACAACAACTGTAGTTAAGAATGTTGACAAACATAGTT CGTACTGCCTGTAGATTACCGATCAGGAATGTGCTTTCCAACGTTGATCGCCCGTGTTTATCGGGTCCCCCGGTTCGATGGTTTACCGGCAAAGGTTACGATGCGGAACGAAAGTTTAAAAT AAGA TC GACAGTGTATTATGTGG CCGC TGCTGGTG TTTTAACCGTAGGATTAAGCTATGCCGCCGTTCCACTGTATCGGATGTTTTGTCAGGCTTACAGCTATGGCGGGACCACCAGCCAGGGACACGATGGCG AGAAGGTTGAAAGCATGCAAAAGGTAAAGGATAG ]
[+] EMBL BX619971 [ CTCTTGCGCAAAAAGTGGAAATTATTGGGCGAGTAAAATGATAAAAATTAGACGAAGGGAATGAAATATTACATTAAAATCCAGTAACAACAACTGTAGTTAAGAATGTTGACAAACATAGTT CGTACTGCCTGTAGATTACCGATCAGGAATGTGCTTTCCAACGTTGATCGCCCGTGTTTATCGGGTCCCCCGGTTCGATGGTTTACCGGCAAAGGTTACGATGCGGAACGAAAGTTTAAAAT AAGA TC GACAGTGTATTATGTGG CCGC T ]
[+] EMBL BM619366 [ ccgCTTGCGCAAAAAGTGGAAATTATTGGGCGAGTAAAATGATAAAAATTAGACGAAGGGAATGAAATATTACATTAAAATCCAGTAACAACAACTGTAGTTAAGAATGTTGACAAACATAGTT CGTACTGCCTGTAGATTACCGATCAGGAATGTGCTTTCCAACGTTGATCGCCCGTGTTTATCGGGTCCCCCGGTTCGATGGTTTACCGGCAAAGGTTACGATGCGGAACGAAAGTTTAAAAT AAGA TC GACAGTGTATTATGTGG CCGC TGCTGGTG TTTTAACCGTAGGATTAAGCTATGCCGCCGTTCCACTGTATCGGATGTTTTGTCAGGCTTACAGCTATGGCGGGACCACCAGCCAGGGACACGATGGCG AGAAGGTTGAAAGCATGCAAAAGGTAAAGGATAGAGTGATAAAGATAAAGTTTAACGCCGATATAGGAGCCTCGATGCGGTGGAACTTTAAACCTCAGCAAACCGAAATCAGGGTTGTTCCGGGTGAAACCGCATTGGCGTTCTACTCGGCCAAAAATCCGACGGACCATCCGGTTGTTGGGATCAGCACCTATAATGTGATTCCATTCGAGGCTGGCGCGTACTTCAACAAAATACAGTGCTTTTGCTTCGAGGAGCAGCAGCTCAATCCACACGAAGAGGTTGGACTTGCCGGTGTTCTTCTACATCGATCC ]
[+] EMBL BX621613 [ AAAAAGTGGAAATTATTGGGCGAGTAAAATGATAAAAATTAGACGAAGGGAATGAAATATTACATTAAAATCCAGTAACAACAACTGTAGTTAAGAATGTTGACAAACATAGTT CGTACTGCCTGTAGATTACCGATCAGGAATGTGCTTTCCAACGTTGATCGCCCGTGTTTATCGGGTCCCCCGGTTCGATGGTTTACCGGCAAAGGTTACGATGCGGAACGAAAGTTTAAAAT AAGA TC GACAGTGTATTATGTGG CCGC TGCTGGTG TTTTAACCGTAGGATTAAGCTATGCCGCCGTTCCACTGTATCGGATGTTTTGTCAGGCTTACAGCTATGGCGGGACCACCAGCCAGGGACACGATGGCG AGAAGGTTGAAAGCATGCAAAAGGTAAAGGATAGAGTGATAAAGATAAAGTTTAACGCCGATATAGGAGCCTCGATGCGGTGGAACTTTAAACCTCAGCAAACCGAAATCAGGGTTGTTCCGGGTGAAACCGCATTGGCGTTCTACTCGGCCAAAAATCCGACGGACCATCCGGTTGTTGGGATCAGCACCTATAATGTGATTCCATTCGAGGCTGGCGCGTACTTCAACAAAATACAGTGCTTTTGCTTCGAGGAGCAGCAGCTCAATCCACACGAAGAGGTT GACTTGCCGGTGTTCTTCTACATCGATCCGGATTTTATAGAGGAGCCTAAGATGGAACTGGTAGACTCAATTACGCTATCGTACACA TTCTTCGAGTCAAAGGATGGCGTGAACATACAAATGCCGGTGTATGCAAAACAGCATGGNTAAACAAGGATGTGTTAGTTTTTG AATGA ]
[+] EMBL BX619940 [ GGAAATTATTGGGCNAGTAAAATGATAAAAATTAGACGAAGGGAATGAAATATTGCATAAAAATCCAGTAACAACAACTGTAGTTAAGAATGTTGACNAACATAGTTACGTACTGCCTGTAGATTACCGATCAGGAATGTGCTTTCCAACGTTGATCGCCCGTGTTTATCGGGTCCCCCGGTTCGATGGTTTACCGGCAAAGGTTACGATGCGGAACGAAAGTTTAAAAT AAGA TC GACAGTGTATTATGTGG CCGC TGCTGGTG TTTTAACCGTAGGATTAAGCTATGCCGCCGTTCCACTGTATCGGATGNNTTGTCAGGCTTACAGC ]
[-] EMBL BX466662 [ anGTTTCAAATAAAGATTCGGACAGTGTATTANGTGGCCCGCTTCCTGGTGCTTTTAACCGTAGGATTAAGCTATGCCGCCGTTCCACTGTATCGGATGNTTTGTCAGGCTTACAGCTATGGCGGGACCACCAGCCAGGGACACGATGGCGCAGAAGGTTGAAAGCATGCAAAAGGTAAAGGATAGAGTGATAAAGATAAAGTTTAACGCCGATATAGGAGCCTCGATGCGGTGGAACTTTAAACCTCAGCAAACCGAAATCAGGGTTGTTCCGGGTGAAACCGCATTGGCGTTCTACTCGGCCAAAAATCCGACGGACCATCCGGTTGTTGGGATCAGCACCTATAATGTGATTCCATTCGAGGCTGGCGCGTACTTCAACAAAATACAGTGCTTTTGCTTCGAGGAGCAGCAGCTCAATCCACACGAAGAGGTT GACTTGCCGGTGTTCTTCTACATCGATCCGGATTTTATAGAGGACCCTAAGATGGAACTGGTAGACTCAATTACGCTATCGTACACATTTCTTCGAGTCAAAGGATGGCGTGAACATACAAATGCCGGTGTATGCAAAACAGCATGGTTAAA AAGGATGTGTTAGTTTTTGAAATGATGTTAAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAATNANACAAAAAGGACGGACTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7576#0 CACCGNGCNGANTCGTTATGAGCTCGAGGCAGAATCGCCAGAGGTCTTAGCGCAAAAAGT 60
consensus_7576#1 -------CCGAT--GACATAACATCAAAACATCAACAAAGGTGCTCTT-GCGCAAAAAGT 50
* ** * ** * ** * ** * * * * **** ***********
consensus_7576#0 GGAAATTATTGGGCGAGTAACAATGATAAAAATTAGACGAAGGGAATGAAATATTCACAT 120
consensus_7576#1 GGAAATTATTGGGCGAGTAA-AATGATAAAAATTAGACGAAGGGAATGAAATATT-ACAT 108
******************** ********************************** ****
consensus_7576#0 TAAAATCCCAGGTTAACAACAGAGAGCCNTCTGACGTTAATGCGTCTGGACAGTAGGACA 180
consensus_7576#1 TAAAATCCAG---TAACAACAA--------CTGTAGTTAA-GAATGTTGACAA----ACA 152
******** ******** *** ***** * * * **** ***
consensus_7576#0 CACTTCGGGTACTACTAGCAACCCACGAAGCAGAGCGACAGCCAAGATTTAANAGGGTTT 240
consensus_7576#1 TAGTTCG--TACTGCCTGTAGATTACCGATCAGG------AATGTGCTTTCCAACGTTGA 204
* **** **** * * * ** * *** * *** * * *
consensus_7576#0 TTACCCTCGGGGATACAACCGTTTGGAGCCACCCTCTTGGTG-TTTAAGGGCAACNTTAT 299
consensus_7576#1 TCGCCCGTGTTTAT---------CGGGTCCCCCGGTTCGATGGTTTACCGGCAAAGGTTA 255
* *** * ** ** ** ** * * ** **** ***** *
consensus_7576#0 TGAAGCGCCATGGCAATTCCCCCATACGGTCGGCA-CACTTAGTTTGGCCCTTATTTTCC 358
consensus_7576#1 CGATGCGGAACGA-AAGTTTAAAATAAGATCGACAGTGTATTATGTGGCCGCTGCTGGTG 314
** *** * * ** * *** * *** ** * * ***** * *
consensus_7576#0 CCCAAAAACCAGGTTTGATCCA-GCCCCGTTGTTGCTATTCTGAGTGTCCCCCCCGGATT 417
consensus_7576#1 TTTTAACCGTAGGATTAAGCTATGCCGCCGTTCCACTGTATCGGATGTTTTGTCAGGCTT 374
** *** ** * * * *** * * ** * * *** * ** **
consensus_7576#0 CCGATTCGGGTAATACCCGAGACAGACAGCGTTTCAACAGGATAGACCGGAAAACGACAA 477
consensus_7576#1 ACAGCTATGGCGGGACC---ACCAGCCAGGG-----ACACGATGGCGAGAAGGTTGAAAG 426
* * ** *** *** *** * *** *** * * * ** *
consensus_7576#0 CGTTTATACACACACTTAAANGATTCGCGACAAAGTCGTCNATCATAGTTCGAGACCNGA 537
consensus_7576#1 C----ATGCAAAAGGTAAAGGATAGAGTGATAAAGATAAAGTTTA-ACGCCGATATAGGA 481
* ** ** * * ** * ** **** * * * *** * **
consensus_7576#0 CTTNGGCTTGGGTTGGTTTTNAAAACCCACGGTAGACGCATCTTCAAAGGCCTATTGGCC 597
consensus_7576#1 GCCTCGATGCGGTGGAACTTTAAA--CCTCAGCAAAC-CGAAATCAGGGTTGTTCCGGGT 538
* * *** * ** *** ** * * * ** * *** * * **
consensus_7576#0 CAGACC-TGTTTTCCCCAACCTTGG--ATAATCCCGGCGAATGCTNTNTAATGGTTACCA 654
consensus_7576#1 GAAACCGCATTGGCGTTCTACTCGGCCAAAAATCCGACGGA--CCATC---CGGTTGTTG 593
* *** ** * ** ** * ** *** ** * * * ****
consensus_7576#0 AGAGGCTTAACCACACGNTAATTCAGGCCGGTCGTAGGAGGAACACCCCAACNACCAAAA 714
consensus_7576#1 GGATCAGCACCTATAATGTGATTCCATTCGAGGCTGG--CGCGTACTTCAACAAAATACA 651
** * * * * * **** ** * * * ** **** * * *
consensus_7576#0 GGCCCCCAAAGGCGGGGAAAACCCAACCCCAGGCAANCTATCGGAGNGACCCG--GACAC 772
consensus_7576#1 GTGCTTTTGCTTCGAGGAGCAGC-AGCTCAATCCACACGAAGAGGTTGACTTGCCGGTGT 710
* * ** *** * * * * * * ** * * * *** * *
consensus_7576#0 AGGAAAACGAAGGGTCTTGTTGGAANAAAAANTCGCCCAACATTTNGCCAAAAGCACCAG 832
consensus_7576#1 TCTTCTAC-ATCGATCCGGATTTTATAGAGGA--GCCTAAGATGGAACTGGTAG-ACTCA 766
** * * ** * * * * * *** ** ** * ** **
consensus_7576#0 AACGGGCGTTCACAN-CATGGGCGCGNACATTAAATCACACGTNGGGAAGTAAAACAAGA 891
consensus_7576#1 ATTACGCTATCGTACACATTCTTCGAGTCAAAGGATGGCGTGAACATACAAATGCCGGTG 826
* ** ** * *** ** ** * * * * *
consensus_7576#0 CGTG-GAAATTTNATACAGACACGGTANCCTCTNAAAANCCGAGGCACACCGAGGAACTT 950
consensus_7576#1 TATGCAAAACAGCATGGNTAAACAAGGATGTGTTAGTTTTTGAATGATGTTAAAAAAAAA 886
** *** ** * ** * * * ** * * **
consensus_7576#0 TCNAATCAACAGTCGAAAAGGACCCCTATTACCAGAACACTTTGCAGACTGCTGAGTTT 1009
consensus_7576#1 AAAGGAAAAAAAAAAAAAAAAAATNANACAAAAAGGACGGACTGT-------------- 931
** * **** * * * ** ** **
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||