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Anopheles gambiae
cluster # 7579 cluster # 7579       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7579#0 length = 725 sequences # 1  
consensus_7579#1 length = 709 sequences # 6  

consensusID : consensus_7579#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 725
fasta sequence
                              [GAATTCCCCGAGGTATGGACAGATATTTTTAAACAAAATGTCGTGGATCCCACCGTTGTGAAGAATAAAAGAAAGTCAACCATAGTGTCTGTGTTAAGGGGACACCTACTTTAAAACCTTCTTCAAAGACACTCGTTCGCGCGCGTGTTCGTATAATTTCGTATGCAAATGCCGTTCGGACTGTCTTATTTTCCCCCGGGGACGTTTGTGATTTCGTTCATTCGGTTCGGTACGTGCGAGTGATAAGTCGTTGTCGAGCGCACATCCCCAGACCAGCGCAGTGAATTCGAAGTGGAGCAGCGGGCATACAGTGACGTCTAGCGGAAGCGTGCAATTGACGTTCCCCAATCAAGAAGAAGGCCCCGGCAACCGTCGGCAACGATCAAAACCCCGGCCACGATCAACACACCCGGTTCTATCCAGCAAGCGTCCGCCGCTAGGTGAAAGCTCACAGCGAAGCAACATGGTACTCTCGATGCTGATGGTACAGACGCTGACAACGCTGCTAGAGCCGCCACCTGCGATCGGCGGCACCAAGGGCCTATCGTCGCCCGGGCAGCCGCATCAGCCGCAGGCCAACATAGCGGTGTTTATGTTTCTGTTTATGCTGTGCGCGGCGGAGGTTGTGTTTATCAAGCTGCTCGGCGCTGACGTCGCTCGGAAGTGGTGATATATTCGGCACTGCANCCGGCAGCACCAACTGGCGCATCAAACGAATATATACA]

[+] EMBL AL932313             [GAATTCCCCGAGGTATGGACAGATATTTTTAAACAAAATGTCGTGGATCCCACCGTTGTGAAGAATAAAAGAAAGTCAACCATAGTGTCTGTGTTAAGGGGACACCTACTTTAAAACCTTCTTCAAAGACACTCGTTCGCGCGCGTGTTCGTATAATTTCGTATGCAAATGCCGTTCGGACTGTCTTATTTTCCCCCGGGGACGTTTGTGATTTCGTTCATTCGGTTCGGTACGTGCGAGTGATAAGTCGTTGTCGAGCGCACATCCCCAGACCAGCGCAGTGAATTCGAAGTGGAGCAGCGGGCATACAGTGACGTCTAGCGGAAGCGTGCAATTGACGTTCCCCAATCAAGAAGAAGGCCCCGGCAACCGTCGGCAACGATCAAAACCCCGGCCACGATCAACACACCCGGTTCTATCCAGCAAGCGTCCGCCGCTAGGTGAAAGCTCACAGCGAAGCAACATGGTACTCTCGATGCTGATGGTACAGACGCTGACAACGCTGCTAGAGCCGCCACCTGCGATCGGCGGCACCAAGGGCCTATCGTCGCCCGGGCAGCCGCATCAGCCGCAGGCCAACATAGCGGTGTTTATGTTTCTGTTTATGCTGTGCGCGGCGGAGGTTGTGTTTATCAAGCTGCTCGGCGCTGACGTCGCTCGGAAGTGGTGATATATTCGGCACTGCANCCGGCAGCACCAACTGGCGCATCAAACGAATATATACA]


>consensus_7579#0 GAATTCCCCGAGGTATGGACAGATATTTTTAAACAAAATGTCGTGGATCCCACCGTTGTG AAGAATAAAAGAAAGTCAACCATAGTGTCTGTGTTAAGGGGACACCTACTTTAAAACCTT CTTCAAAGACACTCGTTCGCGCGCGTGTTCGTATAATTTCGTATGCAAATGCCGTTCGGA CTGTCTTATTTTCCCCCGGGGACGTTTGTGATTTCGTTCATTCGGTTCGGTACGTGCGAG TGATAAGTCGTTGTCGAGCGCACATCCCCAGACCAGCGCAGTGAATTCGAAGTGGAGCAG CGGGCATACAGTGACGTCTAGCGGAAGCGTGCAATTGACGTTCCCCAATCAAGAAGAAGG CCCCGGCAACCGTCGGCAACGATCAAAACCCCGGCCACGATCAACACACCCGGTTCTATC CAGCAAGCGTCCGCCGCTAGGTGAAAGCTCACAGCGAAGCAACATGGTACTCTCGATGCT GATGGTACAGACGCTGACAACGCTGCTAGAGCCGCCACCTGCGATCGGCGGCACCAAGGG CCTATCGTCGCCCGGGCAGCCGCATCAGCCGCAGGCCAACATAGCGGTGTTTATGTTTCT GTTTATGCTGTGCGCGGCGGAGGTTGTGTTTATCAAGCTGCTCGGCGCTGACGTCGCTCG GAAGTGGTGATATATTCGGCACTGCANCCGGCAGCACCAACTGGCGCATCAAACGAATAT ATACA



consensusID : consensus_7579#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 709
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCG------CGAAACATCGCTGACGTTGACGTTACCGTTACTGGCGGTGATCATAGCCATAGGAGAAGACGCAGCAGAAGCAACAAGTCTTCAACCTTACCTCATCGATCGTGCGAGTACAACCGAAAAGAGC---GAAGAAAACAAAAACTGGAAGAGATTATTTTTAAACAAAATGTCTTGGATCCCAACGTTGTGAAGAATAAAAGAAAGTCAACCGCAGTGTCTGTGTTAAGGGGACACCTACTTT-AGCCCTTCTTGAAAGACAATCGTTCGTGCGCGTGTTCGTATAATTTCGTATGCAAATGCCGTTTGGACTGTCTTATTTTCCCCCGGGGACGTTTGTGATTTCGTTCATTCGGTTCGGTACGTGCGAGTGATAAGTCGTTGTCGGGCGCACATTCCCA-ACCA----AGTGTATTCGAAGTGGAGCAGCGAGCATACAGTGACGTCTAGCGGAAGCGTGCAATTGACGTTCCCCAATCAAGAAGAAGGCCCCGACAACCGTCGGCAACGATCAAAACCCC-GCCACGATCAACACACCCGGTTCTATCTAGCAAGCGTGCACAGCTAGGTGAAAGCTCACAGCGAAGCAACATGGTACTCTCGATGCTGATGGTACAGACGCTGACAACGCTGCTAGAGCCGCCACCTGCGATCGGCGGCACCAAGGGCCTATCGTCGCCCGGGCAGCCGC]

[+] EMBL BM621821             [CCGCCCACGCGTCCGCCCACGCGTCCG      CGAAACATCGCTGACGTTGACGTTACCGTTACTGGCGGTGATCATAGCCATAGGAGAAGACGCAGCAGAAGCAACAAGTCTTCAACCTTACCTCATCGATCGTGCGAGTACAACCGAAAAGAGC   GAAGAAAACAAAAACTGGAAGAGATTATTTTTAAACAAAATGTCTTGGATCCCAACGTTGTGAAGAATAAAAGAAAGTCAACCGCAGTGTCTGTGTTAAGGGGACACCTACTTT AGCCCTTCTTGAAAGACAATCGTTCGTGCGCGTGTTCGTATAATTTCGTATGCAAATGCCGTTTGGACTGTCTTATTTTCCCCCGGGGACGTTTGTGATTTCGTTCATTCGGTTCGGTACGTGCGAGTGATAAGTCGTTGTCGGGCGCACATTCCCA ACCA    AGTGTATTCGAAGTGGAGCAGCGAGCATACAGTGACGTCTAGCGGAAGCGTGCAATTGACGTTCCCCAATCAAGAAGAAGGCCCCGACAACCGTCGGCAACGATCAAAACCCC GCCACGATCAACACACCCGGTTCTATCTAGCAAGCGTGCACAGCTAGGTGAAAGCTCACAGCGAAGCAACATGGTACTCTCGATGCTGATGGTACAGACGCTGACAACGCTGCTAGAGCCGCCACCTGCGATCGGCGGCACCAA                          ]
[+] EMBL BM635445             [CCGCCCACGCGTCCGCCCACGCGTCCGGCGCCACGAAACATCGCTGACGTTGACGTTACCGTTACTGGCGGTGATCATAGCCATAGGAGAAGACGCAGCAGAAGCAACAAGTCTTCAACCTTACCTCATCGATCGTGCGAGTACAACCGAAAAGAGC   GAAGAAAACAAAAACTGGAAGAGATTATTTTTAAACAAAATGTCTTGGATCCCAACGTTGTGAAGAATAAAAGAAAGTCAACCGCAGTGTCTGTGTTAAGGGGACACCTACTTT AGCCCTTCTTGAAAGACAATCGTTCGTGCGCGTGTTCGTATAATTTCGTATGCAAATGCCGTTTGGACTGTCTTATTTTCCCCCGGGGACGTTTGTGATTTCGTTCATTCGGTTCGGTACGTGCGAGTGATAAGTCGTTGTCGGGCGCACATTCCCA ACCA    AGTGTATTCGAAGTGGAGCAGCGAGCATACAGTGACGTCTAGCGGAAGCGTGCAATTGACGTTCCCCAATCAAGAAGAAGGCCCCGACAACCGTCGGCAACGAT                                                                                                                                                                                    ]
[+] EMBL BM576407             [                ccgaGCG CCA      CGAAACATCGCTGACGTTGACGTTACTGTTCCTGGCGGTGATCATAGCCATAGGAGGAGTAGCAGCAGGAGCAACAAGTCTTCAACCTTACCTCATCGATCGTGCGAGCACAGCCGAAAAGAGCGAAGAAGAAAAAAAAAACTGGACAAGATTATTTTTAAACAAAATGTCGTGGATCCCACCGTTGTGAAGAATAAAAGAAAGTCAACCATAGTGTCTGTGTTAAGGGGACACCTACTTTAAAACCTTCTTCAAAGACACTCGTTCGCGCGCGTGTTCGTATAATTTCGTATGCAAATGCCGTTCGGACTGTCTTATTTTCCCCCGGGGACGTTTGTGATTTCGTTCATTCGGTTCGGTACGTGCGAGTGATAAGTCGTTGTCGAGCGCACATCCCCAGACCAGCGCAGTGAATTCGAAGTGGAGCAGCGGGCATACAGTGACGTCTAGCGGAAGCGTGCAATTGACGTTCCCCAATCAAGAAGAAGGCCCCGGCAACCGTCGGCAACGATCAAAACCCCGGCCACGATCAACACACCCGGTTCTATCCAGCAAGCGTCCGCCGCTAGGTGAAAGCTCACAGCGAAGCAACATGGTACTCTCGATGCTGATGGTACAGACGCTGACAACGCTGCTAGAGCCGCCACCTGCGATCGGCGGCACCAAGG                        ]
[+] EMBL BM622614             [                        CCG      CGAAACATCGCTGACGTTGACGTTACCGTTACTGGCGGTGATCATAGCCATAGGAGAAGACGCAGCAGAAGCAACAAGTCTTCAACCTTACCTCATCGATCGTGCGAGTACAACCGAAAAGAGC   GAAGAAAACAAAAACTGGAAGAGATTATTTTTAAACAAAATGTCTTGGATCCCAACGTTGTGAAGAATAAAAGAAAGTCAACCGCAGTGTCTGTGTTAAGGGGACACCTACTTT AGCCCTTCTTGAAAGACAATCGTTCGTGCGCGTGTTCGTATAATTTCGTATGCAAATGCCGTTTGGACTGTCTTATTTTCCCCCGGGGACGTTTGTGATTTCGTTCATTCGGTTCGGTACGTGCGAGTGATAAGTCGTTGTCGGGCGCACATTCCCA ACCA    AGTGTATTCGAAGTGGAGCAGCGAGCATACAGTGACGTCTAGCGGAAGCGTGCAATTGACGTTCCCCAATCAAGAAGAAGGCCCCGACAACCGTCGGCAACGATCAAAACCCC TCCACGATCAACACACCCGGTTCTATCTAGCAAGCGTGCACAGCTAGGTGAAAGCTCACAGCGAAGCAACATGGTACTCTCGATGCTGATGGTACAGACGCTGACAACGCTGCTAGAGCCGCCACCTGCGATCGGC                                  ]
[+] EMBL BX627164             [                                                            GTTCCTGGCGGTGATCATAGCCATAGGAGGAGTAGCAGCAGGAGCAACAAGTCTTCAACCTTACCTCATCGATCGTGCGAGCACAGCCGAAAAGAGCGAAGAAGAAAAAAAAAACTGGACAAGATTATTTTTAAACAAAATGTCGTGGATCCCACCGTTGTGAAGAATAAAAGAAAGTCAACCATAGTGTCTGTGTTAAGGGGACACCTACTTTAAAACCTTCTTCAAAGACACTCGTTCGCGCGCGTGTTCGTATAATTTCGTATGCAAATGCCGTTCGGACTGTCTTATTTTCCCCCGGGGACGTTTGTGATTTCGTTCATTCGGTTCGGTACGTGCGAGTGATAAGTCGTTGTCGAGCGCACATCCCCAGACCAGCGCAGTGAATTCGAAGTGGAGCAGCGGGCATACAGTGACGTCTAGCGGAAGCGTGCAATTGACGTTCCCCAATCAAGAAGAAGGCCCCGGCAACCGTCGGCAACGATCAAAACCCCGGCCACGATCAACACACCCGGTTCTATCCAGCAAGCGTCCGCCGCTAGGTGAAAGCTCACAGCGAAGCAACATGGTACTCTCGATGCTGATGGTACAGACGCTGACAACGCTGCTAGAGCCGCCACCTGCGATCGGCGGCACCAAGGGCCTATCGTCGCCCGGGCAGCCGC]
[+] EMBL BM590346             [                                                                                                                  TCAACCTTACCTCATCGATCGTGCGAGTACAACCGAAAAGAGC   GAAGAAAACAAAAACTGGAAGAGATTATTTTTAAACAAAATGTCTTGGATCCCAACGTTGTGAAGAATAAAACAAAGTCAACCGCAGTGTCTGTGTTAAGGGGACACCTACTTT AGCCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]


>consensus_7579#1 CCGCCCACGCGTCCGCCCACGCGTCCGCGAAACATCGCTGACGTTGACGTTACCGTTACT GGCGGTGATCATAGCCATAGGAGAAGACGCAGCAGAAGCAACAAGTCTTCAACCTTACCT CATCGATCGTGCGAGTACAACCGAAAAGAGCGAAGAAAACAAAAACTGGAAGAGATTATT TTTAAACAAAATGTCTTGGATCCCAACGTTGTGAAGAATAAAAGAAAGTCAACCGCAGTG TCTGTGTTAAGGGGACACCTACTTTAGCCCTTCTTGAAAGACAATCGTTCGTGCGCGTGT TCGTATAATTTCGTATGCAAATGCCGTTTGGACTGTCTTATTTTCCCCCGGGGACGTTTG TGATTTCGTTCATTCGGTTCGGTACGTGCGAGTGATAAGTCGTTGTCGGGCGCACATTCC CAACCAAGTGTATTCGAAGTGGAGCAGCGAGCATACAGTGACGTCTAGCGGAAGCGTGCA ATTGACGTTCCCCAATCAAGAAGAAGGCCCCGACAACCGTCGGCAACGATCAAAACCCCG CCACGATCAACACACCCGGTTCTATCTAGCAAGCGTGCACAGCTAGGTGAAAGCTCACAG CGAAGCAACATGGTACTCTCGATGCTGATGGTACAGACGCTGACAACGCTGCTAGAGCCG CCACCTGCGATCGGCGGCACCAAGGGCCTATCGTCGCCCGGGCAGCCGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7579#0      ------------------------------------------------------------
consensus_7579#1      CCGCCCACGCGTCCGCCCACGCGTCCGCGAAACATCGCTGACGTTGACGTTACCGTTACT 60
                                                                                  

consensus_7579#0      ------------------------------------------------------------
consensus_7579#1      GGCGGTGATCATAGCCATAGGAGAAGACGCAGCAGAAGCAACAAGTCTTCAACCTTACCT 120
                                                                                  

consensus_7579#0      -------------------------------GAATTCCCCGAGGTATGGACAGA--TATT 27
consensus_7579#1      CATCGATCGTGCGAGTACAACCGAAAAGAGCGAAGAAAACAAAAACTGGAAGAGATTATT 180
                                                     ***     * *    ****      ****

consensus_7579#0      TTTAAACAAAATGTCGTGGATCCCACCGTTGTGAAGAATAAAAGAAAGTCAACCATAGTG 87
consensus_7579#1      TTTAAACAAAATGTCTTGGATCCCAACGTTGTGAAGAATAAAAGAAAGTCAACCGCAGTG 240
                      *************** ********* ****************************  ****

consensus_7579#0      TCTGTGTTAAGGGGACACCTACTTTAAAACCTTCTTCAAAGACACTCGTTCGCGCGCGTG 147
consensus_7579#1      TCTGTGTTAAGGGGACACCTACTTTAGC-CCTTCTTGAAAGACAATCGTTCGTGCGCGTG 299
                      **************************   ******* ******* ******* *******

consensus_7579#0      TTCGTATAATTTCGTATGCAAATGCCGTTCGGACTGTCTTATTTTCCCCCGGGGACGTTT 207
consensus_7579#1      TTCGTATAATTTCGTATGCAAATGCCGTTTGGACTGTCTTATTTTCCCCCGGGGACGTTT 359
                      ***************************** ******************************

consensus_7579#0      GTGATTTCGTTCATTCGGTTCGGTACGTGCGAGTGATAAGTCGTTGTCGAGCGCACATCC 267
consensus_7579#1      GTGATTTCGTTCATTCGGTTCGGTACGTGCGAGTGATAAGTCGTTGTCGGGCGCACATTC 419
                      ************************************************* ******** *

consensus_7579#0      CCAGACCAGCGCAGTGAATTCGAAGTGGAGCAGCGGGCATACAGTGACGTCTAGCGGAAG 327
consensus_7579#1      CCA-ACCA----AGTGTATTCGAAGTGGAGCAGCGAGCATACAGTGACGTCTAGCGGAAG 474
                      *** ****    **** ****************** ************************

consensus_7579#0      CGTGCAATTGACGTTCCCCAATCAAGAAGAAGGCCCCGGCAACCGTCGGCAACGATCAAA 387
consensus_7579#1      CGTGCAATTGACGTTCCCCAATCAAGAAGAAGGCCCCGACAACCGTCGGCAACGATCAAA 534
                      ************************************** *********************

consensus_7579#0      ACCCCGGCCACGATCAACACACCCGGTTCTATCCAGCAAGCGTCCGCCGCTAGGTGAAAG 447
consensus_7579#1      ACCCCG-CCACGATCAACACACCCGGTTCTATCTAGCAAGCGTGCACAGCTAGGTGAAAG 593
                      ****** ************************** ********* * * ************

consensus_7579#0      CTCACAGCGAAGCAACATGGTACTCTCGATGCTGATGGTACAGACGCTGACAACGCTGCT 507
consensus_7579#1      CTCACAGCGAAGCAACATGGTACTCTCGATGCTGATGGTACAGACGCTGACAACGCTGCT 653
                      ************************************************************

consensus_7579#0      AGAGCCGCCACCTGCGATCGGCGGCACCAAGGGCCTATCGTCGCCCGGGCAGCCGCATCA 567
consensus_7579#1      AGAGCCGCCACCTGCGATCGGCGGCACCAAGGGCCTATCGTCGCCCGGGCAGCCGC---- 709
                      ********************************************************    

consensus_7579#0      GCCGCAGGCCAACATAGCGGTGTTTATGTTTCTGTTTATGCTGTGCGCGGCGGAGGTTGT 627
consensus_7579#1      ------------------------------------------------------------
                                                                                  

consensus_7579#0      GTTTATCAAGCTGCTCGGCGCTGACGTCGCTCGGAAGTGGTGATATATTCGGCACTGCAN 687
consensus_7579#1      ------------------------------------------------------------
                                                                                  

consensus_7579#0      CCGGCAGCACCAACTGGCGCATCAAACGAATATATACA 725
consensus_7579#1      --------------------------------------
                                                            




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)