These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7580#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1061 fasta sequence [CCGCCCACGCGTCCGGTTTCGCGATCGAATTTCTTTCGCCTTTTTCCTTCTAATAACATCGACTGTATCAAAAAATCGGCTATTGTTCGCGCGCTCTCTCTCTCTGTGTTGTATACACTACCCCATCCACAAAATAGTTATCAAAATGCAAAGTTTAATCCGAACGCCGCACCTAGTAGCGCCAACGATGACTGTGCTGATACTGCTGCTGCTGCTGATACCGATCTCGTCGGAGGTGGAAATCGATTGCAACAGTTTGCGGATGGGACAGTTCATCTGCCCCGATCCGGCGCTGCGTCAGATTGATCCGAAAACGCAGCAACTGCGGGGATGTACGCCGGACAATAAGGCACGCGTTTGGTGCGTCGCTGTCGAGGGGATTGTGTGCAGCGAAACGAAAAACACAAGCTTTACCCGTGAAATGCCCTGCAAATGGACCAATGGATATCACTTCGATACAGCACTGCTGCTCTCCGTGTTTCTC-GGCATGTTCGGTGCGGATCGGTTCTATCTGGGCTATCCCGCCATTGGGCTGCTAAAGTTCTGCACCCTTGGCTTTATGTTTCTGGGCCAGCTGGTCGATGTTATACTGATCGCAACGCAGGTCGTAGGGCCGGCTGATG-GGTCGGCATACATCATACCCTACTACGGACCGGTCATTACGGTCGTGCGTAGTGACAATTGGACGTATCGCCTACCGCAGGATAACTGGTGATTGCTGGCCAACATCTTCCGGCTACCACGATGGCCGCAGGTGGAAAACTAAGAAGGGGGTCACATGTCTTATCGATACAGGGTGGACAAATAGAAAGGAGAGAGATATTACTGCTCTCCTTCATTGCGAAATACCACCCCGAGACGAGACATCCTCTTTCCTTTTGCTCCAGAAGCACGAAGGGTACGAAATGTGATACGATAGCGTGTAGTAGTGAGTTTGTTGGTAATGTTTTTTCCTCCCCTCTCCGAGACAGTGAAGCAGAATAAAATGTAGCCAAAATTAGTAAAAAATTAAATACAAAATACCGATTTGAAATATACGAGAGACTGTTACGCGAAAAAAG] [+] EMBL BM578816 [CCGCCCACGCGTCCGGTTTCGCGATCGAATTTCTTTCGCCTTTTTCCTTCTAATAACATCGACTGTATCAAAAAATCGGCTATTGTTCGCGCGCTCTCTCTCTCTGTGTTGTATACACTACCCCATCCACAAAATAGTTATCAAAATGCAAAGTTTAATCCGAACGCCGCACCTAGTAGCGCCAACGATGACTGTGCTGATACTGCTGCTGCTGCTGATACCGATCTCGTCGGAGGTGGAAATCGATTGCAACAGTTTGCGGATGGGACAGTTCATCTGCCCCGATCCGGCGCTGCGTCAGATTGATCCGAAAACGCAGCAACTGCGGGGATGTACGCCGGACAATAAGGCACGCGTTTGGTGCGTCGCTGTCGAGGGGATTGTGTGCAGCGAAACGAAAAACACAAGCTTTACCCGTGAAATGCCCTGCAAATGGACCAATGGATATCACTTCGATACAGCACTGCTGCTCTCCGTGTTTCTC GGCATGTTCGGTGCGGATCGGTTCTATCTGGGCTATCCCGCCATTGGGCTGCTAAAGTTCTGCACCCTTGGCTTTATGTTTCTGGGCCAGCTGGTCGATGTTATACTGATCGCAACGCAGGTCGTAGGGCCGGCTGATG GGTCGGCATACATCATACCCTACTACGGACCGGTCA ] [+] EMBL CNS09079 [ GCGATCGAATTTCTTTCGCCTTTTTCCTTCTAATAACATCGACTGTATCAAAAAATCGGCTATTGTTCGCGCGCTCTCTCTCTCTGTGTTGTATACACTACCCCATCCACAAAATAGTTATCAAAATGCAAAGTTTAATCCGAACGCCGCACCTAGTAGCGCCAACGATGACTGTGCTGATACTGCTGCTGCTGCTGATACCGATCTCGTCGGAGGTGGAAATCGATTGCAACAGTTTGCGGATGGGACAGTTCATCTGCCCCGATCCGGCGCTGCGTCAGATTGATCCGAAAACGCAGCAACTGCGGGGATGTACGCCGGACAATAAGGCACGCGTTTGGTGCGTCGCTGTCGAGGGGATTGTGTGCAGCGAAACGAAAAACACAAGCTTTACCCGTGAAATGCCCTGCAAATGGACCAATGGATATCACTTCGATACAGCACTGCTGCTCTCCGTGTTTCTC GGCATGTTCGGTGCGGATCGGCTCTATCTGGGCTATCCCGCCATTGGGCTGCTAAAGTTCTGCACCCTTGGCTTTATGTTTCTGGGCCAGCTGGTCGATGTTATACTGATCGCAACGCAGGTCGTAGGGCCGGCTGAAGAAAAAGGCATACATCATACCCTACTACGGACCGGTCATTACGGTCGTGCGTAGTGACAATTGGACGTATCGCCTACCGCA GATAACTGGTGATTGCTGGCCAACATCTTCCGGCTACCACGATGGCCGCAGTGGGAAAACTAAGAAGGGGGTCACATGTCTTATCGATACAGGGTGGGCAAATAGAAAGGAGAGAGATATTACTGCTCTCCTTCATTGCGAAATACCACCCCGAGACGAGACATCCT ] [-] EMBL CNS08R19 [ CGCCAACGATGACTGTGCTGAAACTGCTGCTGCTGCTGATACCGATCTCGTCGGAGGTGGAAATCGATTGCAACAGTTTGCGGATGGGACAGTTCATCTGCCCCGATCCGGCGCTGCGTCAGATTGATCCGAAAACGCAGCAACTGCGGGGATGTACGCCGGACAATAAGGCACGCGTTTGGTGCGTAGCTGTCGAGGGGATTGTGTGCAGCGAAACGAAAAAAACAAGCTTTACCCGTGAAATGCCCTGCAAATGGACCAATGGATATCACTTCGATACAGCACTGCTGCTCTCCGTGTTTCTCGGGCATGTTCGGTGCGGATCGGTTCTATCTGGGCTATCCCGCCATTGGGCTGCTAAAGTTCTGCACCCTTGGCTTTATGTTTCTGGGCCAGCTGGTCGATGTTATACTGATCGCAACGCAGGTCGTAGGGCCGGCTGATG GGTCGGCATACATCATACCCTACTACGGACCGGTCATTACGGTCGTGCGTAGTAACAATTGGACGTATCGCCTACCGCAGGATAACTGGTGATTGCTGGCCAACATCTTCCGGCTACCACGATGGCCGCAGGTGGAAAACTAAGAAGGGGGTCACATGTCTTATCGATACAGGGTGGACAAATAGAAAGGAAAGAGATATTACTGCTCTCCTTCATTGCGAAATACCACCCCGAGACGAG ] [-] EMBL CNS0907A [ ACGCAGCAACTGCGGGGATGTACGCCGGACAATAAGGCACGCGTTTGGTGCGTGGCTGTCGAGGGGATTGTGTGCAGCGAAACGTTTTTTACAAGCTTTACCCGTGAAATGCCCTGCAAATGGACCAATGGTTATCACTTCGATACAGAACTGCTGCTCTCCGTGTTTCTC GGCATGTTCGGTGCGGATCGGCTCTATCTGGGCTATCCCGCCATTGGGCTGCTAAAGTTCTGCACCCTTGGCTTTATGTTTCTGGGCCAGCTGGTCGATGTTATACTGATCGCAACGCAGGTCGTAGGGCCGGCTGATG GGTCGGCATACATCATACCCTACTACGGACCGGTCATTACGGTCGTGCGTAGTGACAATTGGACGTATCGCCTACCGCAGGATTACTGGTGATTGCTGGCCAACATCTTCCGGCTACCACGATGGCCGCAGGTGGAAAACTAAGAAGGGGGTCACATGTCTTATCGATACAGGGTGGGCAAATAGAAAGGAGAGAGATATTACTGCTCTCCTTCATTGCGAAATACCACCCCGAGACGAGACATCCTCTTTCCTTTTGCTCCAGAAGCACGAAGGGTACGAAATGTGATACGATAGCGTGTAGTAGTGAGTTTGTTGGTAATGTTTTTTCCTCCCCTCTCCGAGACAGTGAAGCAGAATAAAATGTAGCCAAAATTAGTAAAAAATTAAATACAAAATACCGATTTGAAATATACGAGAGACTGTTACGCGAAAAAAG] [-] EMBL CNS08Q16 [ AAAAAAAAAAGCTTTACCCGTGAAATGCCCTGCAAATGGACCAATGGATATCACTTCGATACAGAACTGCTGCTCTCCGTGTTTCTC GGCATGTTCGGTGCGGATCGGTTCTATCTGGGCTATCCCGCCATTGGGCTGCTAAAGTTCTGCACCCTTGGCTTTATGTTTCTGGGCCAGCTGGTCGATGTTATACTGATCGCAACGCAGGTCGTAGGGCCGGCTGATG GGTCGGCATACATCATACCCTACTACGGACCGGTCATTACGGTCGTGCGTAGTGACAATTGGACGTATCGCCTACCGCAGGATAACTGGTGATTGCTGGCCAACATCTTCCGGCTACCACGATGGCCGCAGGTGGAAAACTAAGAAGGGGGTCACATGTCTTATCGATACAGGGTGGACAAATAGAAAGGAGAGAGATATTACTGCTCTCCTTCATTGCGAAATACCACCCCGAGACGAGACATCCTCTTTCCTTTTGCTCCAGAAGCACGAAGGGTACGAAATGTGATACGATAGCGTGTAGTAGTGAGTTTGTTGGTAATGTTTTTTCCTCCCCTCTCCGAGACAGTGAAGCAGAATAAAATGTAGCCAAAATTAGTAAAAAATTAAATACAAAATACCGATTTGAAATATACGAGAGACTG ] [+] EMBL CNS08R18 [ TCTGCACCCTTGGCTTTATGTTTCTGGGCCAGCTGGTCGATGTTATACTGATCGCAACGCAGGTCGTAGGGCCGGCTGATG GGTCGGCATACATCATACCCTACTACGGACCGGTCATTACGGTCGTGCGTAGTGACAATTGGACGTATCGCCTACCGCAGATTAACTGGTGATTGCTGGCCAACATCTTCCGGCTACCACGATGGCCGCAGTGGGAAAACTAAGAAGGGGGTCACATGTCTTATCGATACAGGGTGGACAAATAGAAAGGAGAGAGATATTACTGCTCTCCTTCATT ] consensusID : consensus_7580#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence [CGATGTAAACAATAACACAAATTCCGCGTTCAGCTGTTTTCGCGATCGAATTTCTTTCGCCTTTTTCCTTCTAATAACATCGACTGTATCAAAAAATCGGCTATTGTTCGCGCGCTCTCTCTCTCTGTGTTGTATACACTACCCCATCCACAAAATAGTTATCAAAATGCAAAGTTTAATCCGAACGCCGCGCCTAGTAGCGCCAACGATGACTGTGCTGATACTGCTGCTGCTGCTGATACCGATCTCGTCGGAGGTGGAAATCGATTGCAACAGTTTGCGGATGGGACAGTTCATCTGCCCCGATCCGGCGCTGCGTCAGATTGATCCGAAAACGCAGCAACTGCGGGGATGTACGCCGGACAATAAGGCACGCGTTTGGTGCGTCGCTGTCGAGGGGATTGTGTGCAGCGAAACGAAAAACACAAGCTTTACCCGTGAAATGCCCTGCAAATGGACCAATGGATATCACTTCGATACAGCACTGCTGCTCTCCGTGTTTCTCGGCATGTTCGGTGCGGATCGGTTCTATCTGGGCTATCCCGCCATTGGGCTGCTAAAGTTCTGCACCCTTGGCTTTATGTTTCTGGGCCAGCTGGTCGATGTTATACTGATCGCAACGCAGGTCGTAGGGCCGGCTGATGGGTCGGCATACATCATACC] [+] EMBL CNS08Q15 [CGATGTAAACAATAACACAAATTCCGCGTTCAGCTGTTTTCGCGATCGAATTTCTTTCGCCTTTTTCCTTCTAATAACATCGACTGTATCAAAAAATCGGCTATTGTTCGCGCGCTCTCTCTCTCTGTGTTGTATACACTACCCCATCCACAAAATAGTTATCAAAATGCAAAGTTTAATCCGAACGCCGCGCCTAGTAGCGCCAACGATGACTGTGCTGATACTGCTGCTGCTGCTGATACCGATCTCGTCGGAGGTGGAAATCGATTGCAACAGTTTGCGGATGGGACAGTTCATCTGCCCCGATCCGGCGCTGCGTCAGATTGATCCGAAAACGCAGCAACTGCGGGGATGTACGCCGGACAATAAGGCACGCGTTTGGTGCGTCGCTGTCGAGGGGATTGTGTGCAGCGAAACGAAAAACACAAGCTTTACCCGTGAAATGCCCTGCAAATGGACCAATGGATATCACTTCGATACAGCACTGCTGCTCTCCGTGTTTCTCGGCATGTTCGGTGCGGATCGGTTCTATCTGGGCTATCCCGCCATTGGGCTGCTAAAGTTCTGCACCCTTGGCTTTATGTTTCTGGGCCAGCTGGTCGATGTTATACTGATCGCAACGCAGGTCGTAGGGCCGGCTGATGGGTCGGCATACATCATACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7580#0 ---------------------CCGCCCACGCGTCCGGTTTCGCGATCGAATTTCTTTCGC 39 consensus_7580#1 CGATGTAAACAATAACACAAATTCCGCGTTCAGCTGTTTTCGCGATCGAATTTCTTTCGC 60 * * * * * *********************** consensus_7580#0 CTTTTTCCTTCTAATAACATCGACTGTATCAAAAAATCGGCTATTGTTCGCGCGCTCTCT 99 consensus_7580#1 CTTTTTCCTTCTAATAACATCGACTGTATCAAAAAATCGGCTATTGTTCGCGCGCTCTCT 120 ************************************************************ consensus_7580#0 CTCTCTGTGTTGTATACACTACCCCATCCACAAAATAGTTATCAAAATGCAAAGTTTAAT 159 consensus_7580#1 CTCTCTGTGTTGTATACACTACCCCATCCACAAAATAGTTATCAAAATGCAAAGTTTAAT 180 ************************************************************ consensus_7580#0 CCGAACGCCGCACCTAGTAGCGCCAACGATGACTGTGCTGATACTGCTGCTGCTGCTGAT 219 consensus_7580#1 CCGAACGCCGCGCCTAGTAGCGCCAACGATGACTGTGCTGATACTGCTGCTGCTGCTGAT 240 *********** ************************************************ consensus_7580#0 ACCGATCTCGTCGGAGGTGGAAATCGATTGCAACAGTTTGCGGATGGGACAGTTCATCTG 279 consensus_7580#1 ACCGATCTCGTCGGAGGTGGAAATCGATTGCAACAGTTTGCGGATGGGACAGTTCATCTG 300 ************************************************************ consensus_7580#0 CCCCGATCCGGCGCTGCGTCAGATTGATCCGAAAACGCAGCAACTGCGGGGATGTACGCC 339 consensus_7580#1 CCCCGATCCGGCGCTGCGTCAGATTGATCCGAAAACGCAGCAACTGCGGGGATGTACGCC 360 ************************************************************ consensus_7580#0 GGACAATAAGGCACGCGTTTGGTGCGTCGCTGTCGAGGGGATTGTGTGCAGCGAAACGAA 399 consensus_7580#1 GGACAATAAGGCACGCGTTTGGTGCGTCGCTGTCGAGGGGATTGTGTGCAGCGAAACGAA 420 ************************************************************ consensus_7580#0 AAACACAAGCTTTACCCGTGAAATGCCCTGCAAATGGACCAATGGATATCACTTCGATAC 459 consensus_7580#1 AAACACAAGCTTTACCCGTGAAATGCCCTGCAAATGGACCAATGGATATCACTTCGATAC 480 ************************************************************ consensus_7580#0 AGCACTGCTGCTCTCCGTGTTTCTCGGCATGTTCGGTGCGGATCGGTTCTATCTGGGCTA 519 consensus_7580#1 AGCACTGCTGCTCTCCGTGTTTCTCGGCATGTTCGGTGCGGATCGGTTCTATCTGGGCTA 540 ************************************************************ consensus_7580#0 TCCCGCCATTGGGCTGCTAAAGTTCTGCACCCTTGGCTTTATGTTTCTGGGCCAGCTGGT 579 consensus_7580#1 TCCCGCCATTGGGCTGCTAAAGTTCTGCACCCTTGGCTTTATGTTTCTGGGCCAGCTGGT 600 ************************************************************ consensus_7580#0 CGATGTTATACTGATCGCAACGCAGGTCGTAGGGCCGGCTGATGGGTCGGCATACATCAT 639 consensus_7580#1 CGATGTTATACTGATCGCAACGCAGGTCGTAGGGCCGGCTGATGGGTCGGCATACATCAT 660 ************************************************************ consensus_7580#0 ACCCTACTACGGACCGGTCATTACGGTCGTGCGTAGTGACAATTGGACGTATCGCCTACC 699 consensus_7580#1 ACC--------------------------------------------------------- 663 *** consensus_7580#0 GCAGGATAACTGGTGATTGCTGGCCAACATCTTCCGGCTACCACGATGGCCGCAGGTGGA 759 consensus_7580#1 ------------------------------------------------------------ consensus_7580#0 AAACTAAGAAGGGGGTCACATGTCTTATCGATACAGGGTGGACAAATAGAAAGGAGAGAG 819 consensus_7580#1 ------------------------------------------------------------ consensus_7580#0 ATATTACTGCTCTCCTTCATTGCGAAATACCACCCCGAGACGAGACATCCTCTTTCCTTT 879 consensus_7580#1 ------------------------------------------------------------ consensus_7580#0 TGCTCCAGAAGCACGAAGGGTACGAAATGTGATACGATAGCGTGTAGTAGTGAGTTTGTT 939 consensus_7580#1 ------------------------------------------------------------ consensus_7580#0 GGTAATGTTTTTTCCTCCCCTCTCCGAGACAGTGAAGCAGAATAAAATGTAGCCAAAATT 999 consensus_7580#1 ------------------------------------------------------------ consensus_7580#0 AGTAAAAAATTAAATACAAAATACCGATTTGAAATATACGAGAGACTGTTACGCGAAAAA 1059 consensus_7580#1 ------------------------------------------------------------ consensus_7580#0 AG 1061 consensus_7580#1 -- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||