These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7585#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1517 fasta sequence [CCGGCAGCAGCAGCAGCAACAACAGTGCCGCTGGTGGAAGCACTGGAAATGCTGAGGTTAAAACGGAAACTCCCGACGTCGAGCTGGTCAAACAAAACGTTTAATGTAAACAATTGAGCAAAGCTTACTACACACACACACACACAATGAGTTGCGTTAATAGGTTGCGAATCAAAACGAACTTAACACAGGAGACGAACGTGACACCACCCTCAGCATCTTGTACCCCCTACTCCCACTACTCGTGCTATCCCTACTACTGCTAGTGTGAGCATACCGTATCAGTCCAGATCTTTACATTCATGTGGGAGTAAGGAATGTAAATAGATGCGCAGCAGGAAACTGACTATCGTGAGGGTTTGAACTGGGGCTGGTCGGTTAAATTTGCGTGTCAATTGATTGATGCAACAACAGTTTCAATCGTTTCGAGCCCAGATTGCGCTGCTCTATTTGCAACCTTTCGCACCTAAAACACATTCAACTTGATTAAATCAACTCCAAAAGATAGGCATAGGTGAAGCAGAACAGGAAATTTAAAGCAATTTCACTAGTGTGTGGACATTCGTTAAAATAATACTGATCCTCGGAAAGATCGAGCAGTGCTCGGGATCGATGTGATTTCCGTTTCTTTTACCCTGTTTTCCATTTAAACTATCATTCCCCGTGGTAAAGTTTT--ATTTCGGTTTGGATCGGAAAGCATTGCGCTGTGGTTGTTTTAACAAGTTCGAAATCTCTATCTATTGCCAAAAGAGTTCCTTCCTCTCCCTGTCTGCTCGGCAGAAGCAGTAGCAAATACACTCAGACCAACGAGAGACCTATACGAGTCCTTTTTAATAACTAAACAGCAGTAATTCTAAGCTCGCTGGCTGGGATTGTTGAACGATCTGTGTCAATCGTTCGCTTCCCTCCTATTGCGTTCGAAGTTCGGTTTCTTCGGGCAGCAGGTGATAAAAGCGTGAAGGCTCTTGTTCTCATATCCAGCAATGCCGCAGAGGACTGTGATTTTGTGACGTGGAGGTAGGAGTAATATGTTAATTCAAACACATCAGAGGTTGTGGAGCAGTGGTAGTGATCGGATCAATCCGTGCAGGTGGTAGACTTCGTTGCCTAACGAGGGAAATGTAACAGTCGGTAAATAGAAAAGGTCAAGTAAAAACAGAAATAAGTTTACAGAGAGAAATTTGGTGCGATTATTTAGTTAATTTGCCATATTAGAAACGTTATGTTCCTCCGAAGAACACGGTCTAGGGGGGAGCTGGAGAGGAGGAGAAATTGCTACTGCAAGAAAACAAATATTGTGTAATTACTATAGAAATGGTCAGCGCTAGTATGGATGCGCATGCATCATAATTTTATGAAAAAGCTGTGTGTAATTAAAGCTCACGGGGTGTTGCTCCCAGCGCGGCAGTGTGTAAATTAATTGTGTGTGTGTAAAAAGAAAGTAAAAAAACGCTATTAGCGATGATGATGATGATGTATAGGCGGCGAGAACTTTGTGAATAAGTAGAATGATAACA] [+] EMBL BM587073 [CCGGCAGCAGCAGCAGCAACAACAGTGCCGCTGGTGGAAGCACTGGAAATGCTGAGGTTAAAACGGAAACTCCCGACGTCGAGCTGGTCAAACAAAACGTTTAATGTAAACAATTGAGCAAAGCTTACTACACACACACACACACAATGAGTTGCGTTAATAGGTTGCGAATCAAAACGAACTTAACACAGGAGACGAACGTGACACCACCCTCAGCATCTTGTACCCCCTACTCCCACTACTCGTGCTATCCCTACTACTGCTAGTGTGAGCATACCGTATCAGTCCAGATCTTTACATTCATGTGGGAGTAAGGAATGTAAATAGATGCGCAGCAGGAAACTGACTATCGTGAGGGTTTGAACTGGGGCTGGTCGGTTAAATTTGCGTGTCAATTGATTGATGCAACAACAGTTTCAATCGTTTCGAGCCCAGATTGCGCTGCTCTATTTGCAACCTTTCGCACCTAAAACACATTCAACTTGATTAA ] [-] EMBL BM619548 [ AACTTAACACAGGAGACGAACGTGACACCACCCTCAGCATCTTGTACCCCCTACTCCCACTACTCGTGCTATCCCTACTACTACTAGTGTGAGCATACCGTATCAGTCCAGATCTTTACATTCATGTGGGAGTAAGGAATGTAAATAGATGCGCAGCAGGAAACTGACTATCGTGAGGGTTTGAACTGGGGCTAATCGTTTAAATTTGCGTGTCAATTGATTGATGCAACAACAGTTTCAATCGTTTCGAGCCCAGATTGCGCTGCTCTATTTGCAACCTTTCGCACCTAAAACACATTCAACTTGATTAAATCAACTCCAAAAGATAGGCATAGGTGAAGCAGAACAGGAAATTTAAAGCAATTTCACTAGTGTGTGGACATTCGTTAAAATAATACTGATCCTCGGAAAGATCGAGCAGTGCTCGGGATCGATGTGATTTCCGTTTCTTTTACCCTGTTTTCCATTTAAACTATCATTCCCCGTGGTAAAGTTTT ATTTCGG ] [+] EMBL BM596010 [ ccgCGTGACACCACCCTCAGCATCTTGTACCCCCTACTCCCACTACTCGTGCTATCCCTACTACTGCTAGTGTGAGCATACCGTATCAGTCCAGATCTTTACATTCATGTGGGAGTAAGGAATGTAAATAGATGCGCAGCAGGAAACTGACTATCGTGAGGGTTTGAACTGGGGCTGGTCGGTTAAATTTGCGTGTCAATTGATTGATGCAACAACAGTTTCAATCGTTTCGAGCCCAGATTGCGCTGCTCTATTTGCAACCTTTCGCACCTAAAACACATTCAACTTGATTAAATCAACTCCAAAAGATAGGCATAGGTGAAGCAGAACAGGAAATTTAAAGCAATTTCACTAGTGTGTGGACATTCGTTAAAATGATACTGATCCTCGGAAAGATCGAGCAGTGCTCGGGATCGATGTGATTTCCGTTTCTTTTACCCTGTTTTCCATTTAAACTATCATTCCCCGTGGTAAAGTTTTTAATTTATTTTTGGATCGGAAAGCATTGCGCTGTGGTTGTTTTAACAAGTTCGAAATCTCTATCTATTGCCAAAAGAGTTCCTTCCTCTCCCTGTCTGCTCGGCAGAAGCAGTAGCAAATACACTCAGACCAACGAGAGACCTATACGAGTCCTTTTTAATAACTAAACAG ] [+] EMBL BX615604 [ CGCTGTGGTTGTTTTAACAAGTTCGAAATCTCTATCTATTGCCAAAAGAGTTCCTTCCTCTCCCTGTCTGCTCGGCAGAAGCAGTAGCAAATACACTCAGACCAACGAGAGACCTATACGAGTCCTTTTTAATAACTAAACAGCAGTAATTCTAAGCTCGCTGGCTGGGATTGTTGAACGATCTGTGTCAATCGTTCGCTTCCCTCCTATTGCGTTCGAAGTTCGGTTTCTTCGGGCAGCAGGTGATAAAAGCGTGAAGGCTCTTGTTCTCATATCCAGCAATGCCGCAGAGGACTGTGATTTTGTGACGTGGAGGTAGGAGTAATATGTTAATTCAAACACATCAGAGGTTGTGGAGCAGTGGTAGTGATCGGATCAATCCGTGCAGGTGGTAGACTTCGTTGCCTAACGAGGGAAATGTAACAGTCGGTAAATAGAAAAGGTCAAGTAAAAACAGAAATAAGTTTACAGAGAGAAATTTGGTGCGATTATTTAGTTAATTTGCCATATTAGAAACGTTATGTTCCTCCGAAGAACACGGTCTAGGGGGGAGCTGGAGAGGAGGAGAAATTGCTACTGCAAGAAAACAAATATTGTGTAATTACTATAGAAATGGTCAGCGCTAGTATGGATGCGCATGCATCA ] [+] EMBL BX617237 [ TATTTAGTTAATTTGCCATATTAGAAACGTTATGTTCCTCCGAAGAACACGGTCTAGGGGGGAGCTGGAGAGGAGGAGAAATTGCTACTGCAAGAAAACAAATATTGTGTAATTACTATAGAAATGGTCAGCGCTAGTATGGATGCGCATGCATCATAATTTTATGAAAAAGCTGTGTGTAATTAAAGCTCACGGGGTGTTGCTCCCAGCGCGGCAGTGTGTAAATTAATTGTGTGTGTGTAAAAAGAAAGTAAAAAAACGCTATTAGCGATGATGATGATGATGTATAGGCGGCGAGAACTTTGTGAATAAGTAGAATGATAACA] consensusID : consensus_7585#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence [CCGCAACAGCACACCCGCCGGAACAACAAACAGTAGCAGCACCAGCAGCAGCAGCAACAGTGCCGCTGGTGGAAGCACTGGAAATGCTGAGGTGAAAACGGAAACTCCCGACGTCGAGCTGAAACCGCAGCAATTAGTGGGCTCTACGCGTATGCCCGTATTCCTATCCCGCAATGCAAGGCACAGCCGAAAGCACACAGTGGGGAAAATTTCGGTCAACATCGAGGGAAATCCGGCAACGCTGAAGGAGCTGCAGGCGGGCGATGCTGGAGAAGAAAATTCCCCTAACAGCAGCAAAGCCGCGAAAGCTTCTGATGCAAATTCCTCCTCCTCCTCCTCCTTCTCCTCTTCTTCGACGAGTAATGGGTCGAAGCAGCAGCAGTCACATTCGAATGTTGGCGGCGCGGAGGGTGAAAAACAACGTGCCCTAAACGAATCAACCAGTGAAGCTACCGGTGCTACCGGAGGAAAAGTCAAGTCCTCCCAGCAAGAAGAAAGTGGTGCGACCACTGGGAAAGGAGAAACGAATCCTTCATCTTCTCCTGCTGCTGTTGCTGCTGTTTCGGCAACGAGGGATAGCTGTGGAAATGGCGGAAAAGCTGCTAGCAGTGGCAACAATAACAATCTAAACAACGTCAATAACAATAACAGCATTTGCAGCAGCACCAACAAACAGCTA] [+] EMBL BM635006 [CCGCAACAGCACACCCGCCGGAACAACAAACAGTAGCAGCACCAGCAGCAGCAGCAACAGTGCCGCTGGTGGAAGCACTGGAAATGCTGAGGTGAAAACGGAAACTCCCGACGTCGAGCTGAAACCGCAGCAATTAGTGGGCTCTACGCGTATGCCCGTATTCCTATCCCGCAATGCAAGGCACAGCCGAAAGCACACAGTGGGGAAAATTTCGGTCAACATCGAGGGAAATCCGGCAACGCTGAAGGAGCTGCAGGCGGGCGATGCTGGAGAAGAAAATTCCCCTAACAGCAGCAAAGCCGCGAAAGCTTCTGATGCAAATTCCTCCTCCTCCTCCTCCTTCTCCTCTTCTTCGACGAGTAATGGGTCGAAGCAGCAGCAGTCACATTCGAATGTTGGCGGCGCGGAGGGTGAAAAACAACGTGCCCTAAACGAATCAACCAGTGAAGCTACCGGTGCTACCGGAGGAAAAGTCAAGTCCTCCCAGCAAGAAGAAAGTGGTGCGACCACTGGGAAAGGAGAAACGAATCCTTCATCTTCTCCTGCTGCTGTTGCTGCTGTTTCGGCAACGAGGGATAGCTGTGGAAATGGCGGAAAAGCTGCTAGCAGTGGCAACAATAACAATCTAAACAACGTCAATAACAATAACAGCATTTGCAGCAGCACCAACAAACAGCTA] consensusID : consensus_7585#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 598 fasta sequence [GGCAAGAATTCCCCGCAGGTTATNTAATCGGTNTCAGAGCCCAGATNTGCGCTGCATCTACTTTGCAAACCTATTCGCACCTAAAACACATTCGAAACTATGAATTAAATACAACTACCAAAAGATAGGCATAGGTGAAGCAGAACAGGAAATTTAAAGCAATATTCACTAGTTGTGTGGACATATCAGTTTCAAGAACTGATACTGTATCCTTCTGTGAAAGATCNGAAGCAAGTTGCTCTGAGGGNATACGAAATAGTAGATTTCCCCGGTACTANTACTTNTATATACACCCTGTTACTNNNTAACCAATTATTTAANAAACTAATTCATTTACACCCCCCGGTTGGTTCACACCAAGGTCTGCAACCAAAGNATTATACAAAATACGNAGATGGGGGGNATTACAGNCGCACAACAGGACCGATTATGGACCGGACCTTAGACTCGCAGGACTATATGGGTTACGACNNGCAACACACNAANAGGTTTATACCTGAANAANTTCCTACCCTCAAATTACCTTTAAATTATATGGTCCACAACATACTAGTGNAAGGTATACCCCTTATTTCACCCNTNCCTTTACCCCCCTTAG] [+] EMBL AL694522 [GGCAAGAATTCCCCGCAGGTTATNTAATCGGTNTCAGAGCCCAGATNTGCGCTGCATCTACTTTGCAAACCTATTCGCACCTAAAACACATTCGAAACTATGAATTAAATACAACTACCAAAAGATAGGCATAGGTGAAGCAGAACAGGAAATTTAAAGCAATATTCACTAGTTGTGTGGACATATCAGTTTCAAGAACTGATACTGTATCCTTCTGTGAAAGATCNGAAGCAAGTTGCTCTGAGGGNATACGAAATAGTAGATTTCCCCGGTACTANTACTTNTATATACACCCTGTTACTNNNTAACCAATTATTTAANAAACTAATTCATTTACACCCCCCGGTTGGTTCACACCAAGGTCTGCAACCAAAGNATTATACAAAATACGNAGATGGGGGGNATTACAGNCGCACAACAGGACCGATTATGGACCGGACCTTAGACTCGCAGGACTATATGGGTTACGACNNGCAACACACNAANAGGTTTATACCTGAANAANTTCCTACCCTCAAATTACCTTTAAATTATATGGTCCACAACATACTAGTGNAAGGTATACCCCTTATTTCACCCNTNCCTTTACCCCCCTTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7585#0 CCGGCAGCAGCAGCAGCAACAACAGTGCCGCTGGTGGAAGCACTGGAAATGCTGAGGTTA 60 consensus_7585#2 ------------------------------------------------------------ consensus_7585#1 ------------------------------------------------------------ consensus_7585#0 AAACGGAAACTCCCGACGTCGAGCTGGTCAAACAAAACGTTTAATGTAAACAATTGAGCA 120 consensus_7585#2 ------------------------------------------------------------ consensus_7585#1 ------------------------------------------------------------ consensus_7585#0 AAGCTTACTACACACACACACACACAATGAGTTGCGTTAATAGGTTGCGAATCAAAACGA 180 consensus_7585#2 ------------------------------------------------------------ consensus_7585#1 ------------------------------------------------------------ consensus_7585#0 ACTTAACACAGGAGACGAACGTGACACCACCCTCAGCATCTTGTACCCCCTACTCCCACT 240 consensus_7585#2 ------------------------------------------------------------ consensus_7585#1 ------------------------------------------------------------ consensus_7585#0 ACTCGTGCTATCCCTACTACTGCTAGTGTGAGCATACCGTATCAGTCCAGATCTTTACAT 300 consensus_7585#2 ------------------------------------------------------------ consensus_7585#1 ------------------------------------------------------------ consensus_7585#0 TCATGTGGGAGTAAGGAATGTAAATAGATGCGCAGCAGGAAACTGACTATCGTGAGGGTT 360 consensus_7585#2 ------------------------------------------------------------ consensus_7585#1 -----------------------------CCGCAACAGCACACCCGCCGGAACAACAAAC 31 consensus_7585#0 TGAACTGGGGCTGGTCGGTTAAATTTGCGTGTCAATTGATTGATGCAACAACAGTTTCAA 420 consensus_7585#2 ----------------GGCAAGAATTCCCCGCAGGTTATNTAAT-------CGGTNTCA- 36 consensus_7585#1 AGTAGCAGCACCAG-CAGCAGCAGCAACAGTGCCGCTGGTGGAAGCACTGGAAATGCTGA 90 * * * * * * consensus_7585#0 TCGTTTCGAGCCCAGATT-GCGCTGC-TCTA-TTTGCAACCTT--TCGCACCTAAAACAC 475 consensus_7585#2 -------GAGCCCAGATNTGCGCTGCATCTACTTTGCAAACCTATTCGCACCTAAAACAC 89 consensus_7585#1 G----GTGAAAACGGAAACTCCCGACGTCGA-GCTGAAACCGC---AGCAATTAGTGGGC 142 ** * ** * * * ** * ** ** * *** ** * consensus_7585#0 ATTCAAC----TTGATTAAAT-CAACT-CCAAAAGATAGGCATAGGTGAAGCAGAACAGG 529 consensus_7585#2 ATTCGAAACTATGAATTAAATACAACTACCAAAAGATAGGCATAGGTGAAGCAGAACAGG 149 consensus_7585#1 TCTACGCG-TATGCCCGTATTCCTATCCCGCAATGCAAGGCACAGCCGAAAGCACACAG- 200 * * * * * * * ** * ***** ** *** **** consensus_7585#0 AAATTTAAAGCAAT-TTCACTAGT-GTGTGGACAT-TCGTTAAAATAATACTGATCCTCG 586 consensus_7585#2 AAATTTAAAGCAATATTCACTAGTTGTGTGGACATATCAGTTTCA-AGAACTGATACT-- 206 consensus_7585#1 ----TGGGGAAAATTTCGGTCAACATCGAGGGAAATCCGGCAACGCTGAAGGAGCTGC-- 254 * *** * * * ** * * * consensus_7585#0 GAAAGATCGAGCAGTGCTCGGGATCGATGTGATTTCCGTTTCTTTTACCCTGTTTTCCAT 646 consensus_7585#2 ---GTATC------CTTCTGTGAAAGATCNGAAGCAAGTTGCTCTGAGGGNAT------A 251 consensus_7585#1 ----AGGCGGGCGATGCTGGAGAAGAAAATTCCCCTAACAGCAGCAAAGCCGCGAAAGCT 310 * * ** * * * consensus_7585#0 TTAAACTATCATTCCCCGTGGTAAAGTTTTATTTCGGTTTGGATCGGAAAGCATTGCGCT 706 consensus_7585#2 CGAAATAGTAGATTTCCCCGGTA--CTANTACTTNTATATACACCCTGT--TACTNNNTA 307 consensus_7585#1 TCTGATGCAAATTCCTCCTCCTCC-TCCTCCTTCTCCTCTTCTTCGACGAGTAATGGGTC 369 * * * * * * * * * * consensus_7585#0 GTGGTTGTTTTAACAAGTTCGAAATCTCTATCTATTGCCAAAAGAGTTCCTTCCTCTCCC 766 consensus_7585#2 ACCAATTATTTAANAAACT---AATTCATTTACACCCCCCG----GTTGGTTCACACCAA 360 consensus_7585#1 GAAGCAGC----AGCAGTC----ACATTCGAATGTTGGCGGCGCGGAGGGTGAAAAACAA 421 * * * * * * * consensus_7585#0 TGTCTGCTCGGCAGAAGCAGTAGCAAATACAC---TCAGACCAACGAGAGACCTATACGA 823 consensus_7585#2 GGTCTGCAACCAAAGNATTATACAAAATACGNAGATGGGGGGNATTACAGNCGCACAACA 420 consensus_7585#1 CGTGCCCTAAACGAATCAACCAGTGAAGCTAC----CGGTGCTACCGGAGGAAAAGTCAA 477 ** * * ** * * ** * * consensus_7585#0 GTCCTTTTTAATAACTAAACAGCAGTAATTCTAAGCTCGCTGGCTGGGATTGTTGAACGA 883 consensus_7585#2 GGACCGATTATGGACCGGACCTTAGACTCGCAGGACTATATGGGTTACGACNNGCAACAC 480 consensus_7585#1 GTCCTCCC----AGCAAGAAGAAAGTGGTGCGA---CCACTGG---GAAAGGAGAAACGA 527 * * * * ** * *** *** consensus_7585#0 TCTGTGTCAATCGTTCGCTTCCCTCCTATTGCGTTCGAAGTTCGGTTTCTTCGGGCAGCA 943 consensus_7585#2 ACNAANAGGTTTATACCTGAANAANTTCCTACCCTCAAATTACCTTTAAATTATATGGTC 540 consensus_7585#1 ATCCT-TCATCTTCTCCTGCTGCTGTTGCTGCTGT-----TTCGGCAACGAGGGATAGCT 581 * * * * * * * * consensus_7585#0 GGTGATAAAAGCGTGAAGGCTCTTGTTCTCATATCCAGCAATGCCGCAGAGGACTGTGAT 1003 consensus_7585#2 CACAACATACTAGTGNAAGGTATACCCCTTAT-TTCACCCNTNCCTTTACCCCCCTTAG- 598 consensus_7585#1 -GTGGAAATGGCGGAAAAGCTGCTAGCAGTGGCAACAATAACAATCTAAACAACGTCAAT 640 * * * * * ** * consensus_7585#0 TTTGTGACGTGGAGGTAGGAGTAATATGTTAATTCAAACACATCAGAGGTTGTGGAGCAG 1063 consensus_7585#2 ------------------------------------------------------------ consensus_7585#1 AACAATA-ACAGCATTTGCAGCAGCACCAACAAACAGCTA-------------------- 679 consensus_7585#0 TGGTAGTGATCGGATCAATCCGTGCAGGTGGTAGACTTCGTTGCCTAACGAGGGAAATGT 1123 consensus_7585#2 ------------------------------------------------------------ consensus_7585#1 ------------------------------------------------------------ consensus_7585#0 AACAGTCGGTAAATAGAAAAGGTCAAGTAAAAACAGAAATAAGTTTACAGAGAGAAATTT 1183 consensus_7585#2 ------------------------------------------------------------ consensus_7585#1 ------------------------------------------------------------ consensus_7585#0 GGTGCGATTATTTAGTTAATTTGCCATATTAGAAACGTTATGTTCCTCCGAAGAACACGG 1243 consensus_7585#2 ------------------------------------------------------------ consensus_7585#1 ------------------------------------------------------------ consensus_7585#0 TCTAGGGGGGAGCTGGAGAGGAGGAGAAATTGCTACTGCAAGAAAACAAATATTGTGTAA 1303 consensus_7585#2 ------------------------------------------------------------ consensus_7585#1 ------------------------------------------------------------ consensus_7585#0 TTACTATAGAAATGGTCAGCGCTAGTATGGATGCGCATGCATCATAATTTTATGAAAAAG 1363 consensus_7585#2 ------------------------------------------------------------ consensus_7585#1 ------------------------------------------------------------ consensus_7585#0 CTGTGTGTAATTAAAGCTCACGGGGTGTTGCTCCCAGCGCGGCAGTGTGTAAATTAATTG 1423 consensus_7585#2 ------------------------------------------------------------ consensus_7585#1 ------------------------------------------------------------ consensus_7585#0 TGTGTGTGTAAAAAGAAAGTAAAAAAACGCTATTAGCGATGATGATGATGATGTATAGGC 1483 consensus_7585#2 ------------------------------------------------------------ consensus_7585#1 ------------------------------------------------------------ consensus_7585#0 GGCGAGAACTTTGTGAATAAGTAGAATGATAACA 1517 consensus_7585#2 ---------------------------------- consensus_7585#1 ---------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||