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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7586#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1118 fasta sequence
[GGATGCAACAAAAAAAAAAAAAAACAAAAACAAAAGAAAACAAAGCTGTACACAAATAAGTTGTAATGAAAACACACACAAAAAACCATGCGAAAAGAGTGTGGTGTGCACTAAATGAAGTTAAAATCGCTTTGTGTCTTTTAAAAATGTACTCCCTTTAGGCGCATGCATAGGAGAGCAGCAGCACGCACACACACAGGGCGGGTGTGTGTGTTGTGCAGTGGAGTGAATTTCGGAGCGTATGTGAATCTGTGGGCACACGCGGGGGAGCGTTTGAGAGAGAGAGAGAGAGACAGCGAGAGAGAAACACAAGTTGCAAATATTTATTACAAAAAGAAGGATCAAAGCAGAGATCATACAACAACAACAACAA--ACAAACAAAAGCACATACAGACAAGCGATGTATAACTATTATTATTATATAGGTAAAGCAAAGTGTAGTAGAGATAAAAGTAGGAAAACACAGTACGTGCACACACAACAAACAAACAAACAACACGCGTACACTTGTGGACTTGGGTGGGTTTAGTAGTATTCTAGTGAAAAACAGAAGCAAACAAAAGTGGAGAAAAAACATACAATCGCACACACACACAGAGAAACACTAAAAAGGAAGAGGCGGGAGAAGGGGAGTGGTAGTGTTAGTAGTACTTTCGCTTTGATTGGTGATGATTGTAGAACTAGGAAAGAAAGAGCAAACAAAAAAAAAAACAATGGAGGAAAATGTAGAAAAGTTCCCCTTTGCAAATTGTAGGATCAATAAAGAAAATGTGTGACTGCGCGTGTGTGTCCGTGAAGCGCAAAAGAATAGAGAAAACAAATCGATAACATAGAGCGTGGGCGACTCCACGTGCAAGAAGAAGGACGATAAATAGTAGGAAGGTGAGATGAGTGAAAACAGACGAATGAATGGGACGAAATGAATGAACGAATGCCACCAAAACTGGCAGGCGAGAATGAATGGCTGTGTGTGTCAGCAGCAGCAGCAGCAGCAAGCACACCCAGATATGGTTAAGTTGGGAAAAGGAGGAGGAGGAGGGAAAAAAAACAGCTGTAATAATTTTACGCCTAACAAGTCCTCTAATATGTGTATAATAGTATACGCGCGGTGCACTAGA]
[+] EMBL BX606454 [GGATGCAACAAAAAAAAAAAAAAACAAAAACAAAAGAAAACAAAGCTGTACACAAATAAGTTGTAATGAAAACACACACAAAAAACCATGCGAAAAGAGTGTGGTGTGCACTAAATGAAGTTAAAATCGCTTTGTGTCTTTTAAAAATGTACTCCCTTTAGGCGCATGCATAGGAGAGCAGCAGCACGCACACACACAGGGCGGGTGTGTGTGTTGTGCAGTGGAGTGAATTTCGGAGCGTATGTGAATCTGTGGGCACACGCGGGGGAGCGTTTGAGAGAGAGAGAGAGAGACAGCGAGAGAGAAACACAAGTTGCAAATATTTATTACAAAAAGAAGGATCAAAGCAGAGATCATACAACAACAACAACAACCACAAACAAAAGCACATACAGACAAGCGATGTATAACTATTATTATTATATAGGTAAAGCAAAGTGTAGTAGAGATAAAAGTAGGAAAACACAGTACGTGCAC ]
[+] EMBL BM576544 [ ccgGACAGCGAGAGAGAAACGCAAGTTGCAAATATTTATTACAAAAAGAAGGATCAAAGCAGAGATCCTACAACAACAACAACAA ACGAACAAAAGCACATACAGACAACCGGTGTATAACTATTATTATTACATAGGTAAAGCAAAGTGTAGTAGAGATAAAAGTAGGAAAACACAGTGCGTGCACACACAACAAACAAACAAACAACACGCGTACACTTGTGGACTTGGGTGGGTTTAGTAGTATTCTAGTGAAAAACAGAAGCAAACAAAAGTGGAGAAAAAACATACAATCGCACACACACACAGAGAAACACTAAAAAGGAAGAGGCGGGAGAAGGGGAGTGGTAGTGTTAGTAGTACTTTCGCTTTGATTGGTGATGATTGTAGAACTAGGAAAGAAAGAGCAAACAAAAAAAAAAACAATGGAGGAAAATGTAGAAAAGTTCCCCTTTGCAAATTGTAGGATCAATAAAGAAAATGTGTGACTGCGCGTGTGTGTCCGTGAAGCGCAAAAGAATAGAGAAAACAAATCGATAACATAGAGCGTGGGCGACTCCACGTGC ]
[+] EMBL BX609279 [ AGAGGCGGGAGAAGGGGAGTGGTAGTGTTAGTAGTACTTTCGCTTTGATTGGTGATGATTGTAGAACTAGGAAAGAAAGAGCAAAC AAAAAAAAAACAATGGAGGAAAATGTAGAAAAGTTCCCCTTTGCAAATTGTAGGATCAATAAAGAAAATGTGTGACTGCGCGTGTGTGTCCGTGAAGCGCAAAAGAATAGAGAAAACAAATCGATAACATAGAGCGTGGGCGACTCCACGTGCAAGAAGAAGGACGATAAATAGTAGGAAGGTGAGATGAGTGAAAACAGACGAATGAATGGGACGAAATGAATGAACGAATGCCACCAAAACTGGCAGGCGAGAATGAATGGCTGTGTGTGTCAGCAGCAGCAGCAGCAGCAAGCACACCCAGATATGGTTAAGTTGGGAAAAGGAGGAGGAGGAGGGAAAAAAAACAGCTGTAATAATTTTACGCCTAACAAGTCCTCTAATATGTGTATAATAGTATACGCGCGGTGCACTAGA]
[+] EMBL BX613021 [ CAGCAGCAGCAGCAGCAGCAAGCACACGAAGATATGGTTAAGGGGGGAAAAGGAGGAGGAGGAGGGAAAAAAAACAGCTGTAATAATTTTACGCATAACAAGTCATCTAATATGTGTATAAT ]
consensusID : consensus_7586#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 582 fasta sequence
[CCGGTGGTTTTTGCAGAGTTATTTGGAAAATTCTCCTCCACCCCCCTACCTGTCTGTCTCTGTGCCCGTATGCTCTATGTCTTGTGTGTGGAGGGCGCATGATCGTATCGGCATGATTGTCGTGTTTGTATATGTGAAATAGTAAAGTGAGTGCTTGTGCTAAGATGATTAGTTTAAGAACGATAATTTAATTACCCTTGTAGGTTAGTTATAGCGGGAGGGGGGAAATATGAAACGAACGTGCAAGTGTTGTACGTACGATTGACATAGGAGACACAAAAAACAGTATGCAAAAAAACAAAAACAAAAGAAAACAAAGCTGTACACAAATAAGTTGTAATGAAAACACACAAAAAAAAACCACGCGGAAAGAGTGTGGTGTGCACTAAATGAAGTTAAAATCGCTTTGTGTCTTTTAAAAATGTAATCCCTTTAGGCGCATGCATAGGAGAGCAGCACGCACACACACAGGGCGGATGTGTGTGTGTGTGTGTGTGTTGGTGTGTTGTGCATTGGAGTGAATTTCGGAGCGTATGTGAATCTGTGGGCACACGCCGGGGAGCGTTTGATAGAGAGAGAGAG]
[+] EMBL BM582231 [CCGGTGGTTTTTGCAGAGTTATTTGGAAAATTCTCCTCCACCCCCCTACCTGTCTGTCTCTGTGCCCGTATGCTCTATGTCTTGTGTGTGGAGGGCGCATGATCGTATCGGCATGATTGTCGTGTTTGTATATGTGAAATAGTAAAGTGAGTGCTTGTGCTAAGATGATTAGTTTAAGAACGATAATTTAATTACCCTTGTAGGTTAGTTATAGCGGGAGGGGGGAAATATGAAACGAACGTGCAAGTGTTGTACGTACGATTGACATAGGAGACACAAAAAACAGTATGCAAAAAAACAAAAACAAAAGAAAACAAAGCTGTACACAAATAAGTTGTAATGAAAACACACAAAAAAAAACCACGCGGAAAGAGTGTGGTGTGCACTAAATGAAGTTAAAATCGCTTTGTGTCTTTTAAAAATGTAATCCCTTTAGGCGCATGCATAGGAGAGCAGCACGCACACACACAGGGCGGATGTGTGTGTGTGTGTGTGTGTTGGTGTGTTGTGCATTGGAGTGAATTTCGGAGCGTATGTGAATCTGTGGGCACACGCCGGGGAGCGTTTGATAGAGAGAGAGAG]
consensusID : consensus_7586#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 473 fasta sequence
[CCGCAACAACAACAAACAAACAAAAGCACATACAGACAAGCGATGTATAACTATTATTATTATATAGGTAAAGCAAAGTGTAGTA-GAGATAAAAGTAGGAAAACACAGTACGTGCACACACAACAAACAAACAAACAAACAAACAAAAACACGCGTACTCTTGTGGACTTGGGTGGGTTTAGTAGTATTCTAGTGAAAAACAGAAGCAAACAAAAGTGGAGAAAAAAACATACAATCGCACACACACACATAGAGAGAAACACTAAAAAGGAAGAGGAGGGAGAGTGAAGTGGTAGTGTTAGTAGTACTTTCGCTTTGATTGGTGATGATTGTAGAACTAGGAAAGAAAGAGCAAACAAAAAAAAAACAATGGAGGAAAATGTAGAAAAGTTCCCCTTTGCAAATTGTAGGAACAATAGAGAAAATGTGTGACTGCGCGTGTGTGTCCGTGAAGCGCAAAAGAATAGGGAAGC]
[+] EMBL BM621490 [CCGCAACAACAACAAACAAACAAAAGCACATACAGACAAGCGATGTATAACTATTATTATTATATAGGTAAAGCAAAGTGTAGTA GAGATAAAAGTAGGAAAACACAGTACGTGCACACACAACAAACAAACAAACAAACAAACAAAAACACGCGTACTCTTGTGGACTTGGGTGGGTTTAGTAGTATTCTAGTGAAAAACAGAAGCAAACAAAAGTGGAGAAAAAAACATACAATCGCACACACACACATAGAGAGAAACACTAAAAAGGAAGAGGAGGGAGAGTGAAGTGGTAGTGTTAGTAGTACTTTCGCTTTGATTGGTGATGATTGTAGAACTAGGAAAGAAAGAGCAAACAAAAAAAAAACAATGGAGGAAAATGTAGAAAAGTTCCCCTTTGCAAATTGTAGGAACAATAGAGAAAATGTGTGACTGCGCGTGTGTGTCCGTGAAGCGCAAAAGAATAGGGAAGC]
[+] EMBL BM637437 [CCGCAACAACAACAAACAAACAAAAGCACATACAGACTAGCGATGTATAACTATTATTATTATATAGGTAAAGCAAAGTGTAGTAGGAGATAAAAGTAGGAAAACACAGTACGTGCACACACAACAAACAAACAAACAAACAAACAAAAACACGCGTACTCTTGTGGACTTGGGTGGGTTTAGTAGTATTCTAGTGAAAAACAGAAGCAAACAAAAGTGGAGAAAAAAACATACAATCGCACACACACACATAGA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7586#0 GGATGCAACAAAAAAAAAAAAAAACAAAAACAAAAGAAAACAAAGCTGTACACAAATAAG 60
consensus_7586#2 ------------------------------------------------------------
consensus_7586#1 ------------------------------------------------------------
consensus_7586#0 TTGTAATGAAAACACACACAAAAAACCATGCGAAAAGAGTGTGGTGTGCACTAAATGAAG 120
consensus_7586#2 ------------------------------------------------------------
consensus_7586#1 ------------------------------------------------------------
consensus_7586#0 TTAAAATCGCTTTGTGTCTTTTAAAAATGTACTCCCTTTAGGCGCATGCATAGGAGAGCA 180
consensus_7586#2 ------------------------------------------------------------
consensus_7586#1 ------------------------------------------------------------
consensus_7586#0 GCAGCACGCACACACACAGGGCGGGTGTGTGTGTTGTGCAGTGGAGTGAATTTCGGAGCG 240
consensus_7586#2 ------------------------------------------------------------
consensus_7586#1 ------------------------------------------------------------
consensus_7586#0 TATGTGAATCTGTGGGCACACGCGGGGGAGCGTTTGAGAGAGAGAGAGAGAGACAGCGAG 300
consensus_7586#2 ------------------------------------------------------------
consensus_7586#1 ----------------CCGGTGGTTTTTGCAGAGTTATTTGGAAAATTCTCCTCCACCCC 44
consensus_7586#0 AGAGAAACACAAGTTGCAAATATTTATTACAAAAAGAAGGATCAAAGCAGAGATCATACA 360
consensus_7586#2 ----------------------------------------------------------CC 2
consensus_7586#1 CCTACCTGTCTGTCTCTGTGCCCGTATGCTCTATGTCTTGTGTGTGGAGGGCGCATGATC 104
consensus_7586#0 ACAACAACAACAAACAAACAAAAGCACATACAGACAAGCGATGTATA-ACTATTATTATT 419
consensus_7586#2 GCAACAACAACAAACAAACAAAAGCACATACAGACAAGCGATGTATA-ACTATTATTATT 61
consensus_7586#1 GTATCGGCATGATTGTCGTGTTTGTATATGTGAAATAGTAAAGTGAGTGCTTGTGCTAAG 164
* * ** * * * ** * ** * ** ** * **
consensus_7586#0 ATA--TAGGTAAAGCAAAGTGTAGTAGAGATAAAAGTAGGAAAACACAGTACGTGCACAC 477
consensus_7586#2 ATA--TAGGTAAAGCAAAGTGTAGTAGAGATAAAAGTAGGAAAACACAGTACGTGCACAC 119
consensus_7586#1 ATGATTAGTTTAAGAACGATAATTTAATTACCCTTGTAGGTTAGT-TATAGCGGGAGGGG 223
** *** * *** * * ** * ***** * * ** *
consensus_7586#0 ACAACAAACAAACAAACAA-----------CACGCGTACACTTGTGGACTTGGGTGGGTT 526
consensus_7586#2 ACAACAAACAAACAAACAAACAAACAAAAACACGCGTACTCTTGTGGACTTGGGTGGGTT 179
consensus_7586#1 GGAAATATGAAACGAACGTGCAAGTGT---TGTACGTACGATTG---ACATAGGAGACAC 277
** * **** *** ***** *** ** * ** *
consensus_7586#0 TAGTAGTATTCTAGTGAAAAACAGAAGCAAACAAAAGTGGAGAAAAAA-CATACAATCGC 585
consensus_7586#2 TAGTAGTATTCTAGTGAAAAACAGAAGCAAACAAAAGTGGAGAAAAAAACATACAATCGC 239
consensus_7586#1 AAAAAACAGTATGCAAAAAAACAAAAACAAAAGAAAACAAAGCTGTACACAAATAAGTTG 337
* * * * * ******* ** **** *** ** * ** * **
consensus_7586#0 ACACACACACA----GAGAAACACTAAAAAGGAAGAG-GCGGGAGAAGGGGAGTGGTAGT 640
consensus_7586#2 ACACACACACATAGAGAGAAACACTAAAAAGGAAGAG-GAGGGAGA-GTGAAGTGGTAGT 297
consensus_7586#1 TAATGAAAACACACAAAAAAAAACCACGCGGAAAGAGTGTGGTGTGCACTAAATGA-AGT 396
* * *** * *** ** * * ***** * ** * ** ***
consensus_7586#0 GTTAGTAGTACTTTCGCTTTGATTGGTG--ATGATTGTAGAACTAGGAAAGAAAGAGCAA 698
consensus_7586#2 GTTAGTAGTACTTTCGCTTTGATTGGTG--ATGATTGTAGAACTAGGAAAGAAAGAGCAA 355
consensus_7586#1 TAAAATCGCTTTGTGTCTTTTAAAAATGTAATCCCTTTAGGCGCATGCATAGGAGAGCAG 456
* * * * * **** * ** ** * *** * * * ******
consensus_7586#0 -----ACAAAAAAAAAAACAATGGAGGAAAATGTAGAAAAGTTCCCCT-TTGCAAATTGT 752
consensus_7586#2 -----ACAAAAAAAAAA-CAATGGAGGAAAATGTAGAAAAGTTCCCCT-TTGCAAATTGT 408
consensus_7586#1 CACGCACACACACAGGGCGGATGTGTGTGTGTGTGTGTGTGTTGGTGTGTTGTGCATTGG 516
*** * * * *** * *** *** * *** ****
consensus_7586#0 AG-GATCAATAAAGAAAATGTGTGACTGCGCGTGTGTGTCCGTGAAGCGCAAAAGAATAG 811
consensus_7586#2 AG-GAACAATAGAGAAAATGTGTGACTGCGCGTGTGTGTCCGTGAAGCGCAAAAGAATAG 467
consensus_7586#1 AGTGAATTTCGGAGCGTATGTGAATCTGTGGGCACACG-CCGGGGAGCGTTTGATAGAGA 575
** ** ** ***** *** * * * *** * **** * *
consensus_7586#0 AGAAAACAAATCGATAACATAGAGCGTGGGCGACTCCACGTGCAAGAAGAAGGACGATAA 871
consensus_7586#2 GGAAGC------------------------------------------------------ 473
consensus_7586#1 GAGAGAG----------------------------------------------------- 582
*
consensus_7586#0 ATAGTAGGAAGGTGAGATGAGTGAAAACAGACGAATGAATGGGACGAAATGAATGAACGA 931
consensus_7586#2 ------------------------------------------------------------
consensus_7586#1 ------------------------------------------------------------
consensus_7586#0 ATGCCACCAAAACTGGCAGGCGAGAATGAATGGCTGTGTGTGTCAGCAGCAGCAGCAGCA 991
consensus_7586#2 ------------------------------------------------------------
consensus_7586#1 ------------------------------------------------------------
consensus_7586#0 GCAAGCACACCCAGATATGGTTAAGTTGGGAAAAGGAGGAGGAGGAGGGAAAAAAAACAG 1051
consensus_7586#2 ------------------------------------------------------------
consensus_7586#1 ------------------------------------------------------------
consensus_7586#0 CTGTAATAATTTTACGCCTAACAAGTCCTCTAATATGTGTATAATAGTATACGCGCGGTG 1111
consensus_7586#2 ------------------------------------------------------------
consensus_7586#1 ------------------------------------------------------------
consensus_7586#0 CACTAGA 1118
consensus_7586#2 -------
consensus_7586#1 -------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||