These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7592#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1300 fasta sequence [CCGCCCACGCGTCCGTGGAAAAGCTTGAATCAAGCATAGACCTAATGATCGCACGAGCTGAACAGTATTTTTACAGCTGTGACTATCGGCGATGCATCAAAATGTTGGAAGAAATTCTGAAAAACGATCCCTATCACAAACGATCGCTTACGGTGCAGATTGGATGTTTGATGGAGATGAAAGACTTCAATCGGCTTTTCTATGTTGCTCACAAGCTTGTTGATTTTTATCCGGACGATGCCATCTCATGGTATGCCGTGGGGTGCTACTATGATTTGATCGGTAAAAGTGATCCAGCGCGTCGTTATCTTTCCAAAGCAACCTCTCTCGACCGCCTGTACGGTCCGGCTTGGTTGGCATACGGCCATTCGTTCGCAAAGGAAAACGAGCATGATCAGGCAATGGCAGCTTATTTTAAGGCCACACAACTGATGCGCGGATGCCATCTGCCACTGCTGTACATCGGAGTTGAATGTGGGTTGACCAAAAACCATGCAATGGCTGAAAAATTTTTCTACCAAGCTATGTCCATCGCTCCCCTGGACGTGTTCGTTTTGCACGAGCTAGGCGTGATCAAGTACGAGTGTGAGCATTACGAATGTGCAGAGGAAGTTTTCCGCAGCACGTTGGAAATGGTGCGCAATATGGTGAAGCAGAATAATGAACAGTTGACCGCCCGGTGGG-AGCCATTGTTGAACAATTTGGGACACTGTTGCCGGAAAAATAAAAAGTACGAGGAAGCTCTGGAGTTCCACCGATGGGCTCTTTCTCTGAAGCCGTTGAATGCTGCCACGTACACAGCTATCGGATTTGTGCAAGCGTTAATGGGTCAATTATACGATGCAGTAGATTCATTCCACAAAAGTTTGTCTCTGAAAC-GGGATGACGTGTTTACCA-CTACTGTACTGAAGTA-CGTTATCGAAGATCTGACAGAGGTGCAATCGCTTCCTTTCTATGCTGCGGAGGATGCCGAGGAAGATTGCGGCGATAAGGAAGGAGATCAAGCAGAAAAGTCTAGGGACGAGAGTAAAACTTTAGACAAACTGAATACTTGCAATGTCACCGAAGGTGACAGCGAAGATGTTAGAGATAGTGCTCCACGACCTACCTTGCGCATGCAACTCAATTTTGACGAATGGTACACAAAAACGTCCCCCATGAGCGATACTAGTGCGGATGATATGAGCATTGATATTTAGATTGAAGGCAAACAAGCTTTGGAACGGTTTTGATAAAATAAGCTCTATTTGAATAATAAGGGTATACAAATTTGCAAAATTGGCATCAGCTACTTTACTGT] [+] EMBL BM606908 [CCGCCCACGCGTCCGTGGAAAAGCTTGAATCAAGCATAGACCTAATGATCGCACGAGCTGAACAGTATTTTTACAGCTGTGACTATCGGCGATGCATCAAAATGTTGGAAGAAATTCTGAAAAACGATCCCTATCACAAACGATCGCTTACGGTGCAGATTGGATGTTTGATGGAGATGAAAGACTTCAATCGGCTTTTCTATGTTGCTCACAAGCTTGTTGATTTTTATCCGGACGATGCCATCTCATGGTATGCCGTGGGGTGCTACTATGATTTGATCGGTAAAAGTGATCCAGCGCGTCGTTATCTTTCCAAAGCAACCTCTCTCGACCGCCTGTACGGTCCGGCTTGGTTGGCATACGGCCATTCGTTCGCAAAGGAAAACGAGCATGATCAGGCAATGGCAGCTTATTTTAAGGCCACACAACTGATGCGCGGATGCCATCTGCCACTGCTGTACATCGGAGTTGAATGTGGGTTGACCAAAAACCATGCAATGGCTGAAAAATTTTTCTACCAAGCTATGTCCATCGCTCCCCTGGACGTGTTCGTTTTGCACGAGCTAGGCGTGATCAAGTACGAGTGTGAGCATTACGAATGTGCAGAGGAAGTTTTCCGCAGCACGTTGGAAATGGTGCGCAATATGGTGAAGCAGAATAATGAACAGTTGACCGCCCGGTGGGCAGCCATT ] [+] EMBL BM597578 [ ccGGAAAACGAGCATGATCAGGCAATGGCAGCTTATTTTAAGGCCACACAACTGATGCGCGGATGCCATCTGCCACTGCTGTACATCGGAGTTGAATGTGGGTTGACCAAAAACCATGCAATGGCTGAAAAATTTTTCTACCAAGCTATGTCCATCGCTCCCCTGGACGTGTTCGTTTTGCACGAGCTAGGCGTGATCAAGTACGAGTGTGAGCATTACGAATGTGCAGAGGAAGTTTTCCGCAGCACGTTGGAAATGGTGCGCAATATGGTGAAGCAGAATAATGAACAGTTGACCGCCCGGTGGG AGCCATTGTTGAACAATTTGGGACACTGTTGCCGGAAAAATAAAAAGTACGAGGAAGCTCTGGAGTTCCACCGATGGGCTCTTTCTCTGAAGCCGTTGAATGCTGCCACGTACACAGCTATCGGATTTGTGCAAGCGTTAATGGGTCAATTATACGATGCAGTAGATTCATTCCACAAAAGTTTGTCTCTGAAACGGGGATGACGTGTTTACCACCTACTGTACTGAAGTACCGTTATCGAAGATCTGACA ] [+] EMBL BX625172 [ ATGTCCATCGCTCCCCTGGACGTGTTCGTTTTGCACGAGCTAGGCGTGATCAAGTACGAGTGTGAGCATTACGAATGTGCAGAGGAAGTTTTCCGCAGCACGTTGGAAATGGTGCGCAATATGGTGAAGCAGAATAATGAACAGTTGACCGCCCGGTGGG AGCCATTGTTGAACAATTTGGGACACTGTTGCCGGAAAAATAAAAAGTACGAGGAAGCTCTGGAGTTCCACCGATGGGCTCTTTCTCTAAAGCCGTTGAATGCTGCCACGTACACAGCTATCGGATTTGTGCAAGCGTTAATGGGTCAATTATACGATGCAGTAGATTCATTCCACAAAAGTTTGTCTCTGAAAC GGGATGACGTGTTTACCA CTACTGTACTGAAGTA CGTTATCGAAGATCTGACAGAGGTGCAATCGCTTCCTTTCTATGCTGCGGAGGATGCCGAGGAAGATTGCGGCGATAAGGAAGGAGATCAAGCAGAAAAGTCTAGGGACGAGAGTAAAACTTTAGACAAACTGAATACTTGCAATGTCACCGAAGGTGACAGCGAAGATGTTAGAGATAGTGCTCCACGACCTACCTTGCGCATGCAACTCAATTTTGACGAATGGTACACAAAAACGTCCCCCATGAGCGATACTAGTGCGGATGATATGAGCATTGA ] [-] EMBL CNS08LM1 [ GCAATATGGTGAAGCATAATAATGAACAGTTGACCGCCCGGTGGG AGCCATTGTTGAACAATTTGGGACACTGTTGCCGGAAAAATAAAAAGTACGAGGAAGCTCTGGAGTTCCACCGATGGGCTCTTTCTCTGAAGCCGTTAAATGCTGCCACGTACACAGCTATCGGATTTGTGCAAGCGTTAATGGGTCAATTATACGATGCAGTAGATTCATTCCACAAAAGTTTGTCTCTGAAAC GGGATGACGTGTTTACCA CTACTGTACTGAAGTA CGTTATCGAAGATCTGACAGAGGTGCAATCGCTTCCATTCTATGCTGCGGAGGATGCCGAGGAAGATTGCGGCGATAAGGAAGGAGATCAAGCAGAAAAGTCTAGGGACGAGAGTAAAACTTTAGACAAACTGAATACTTGCAATGCCACCGAAGGTGACAGCGAAGATGTTAGAGATAGTGCTCCACGACCTACCTTGCGCATGCAACTCAATTTTGACGAATGGTACACGAAAACGTCCCCCATGAGCGATACTAGTGCGGATGATATGAGCATTGATATTTAGATTGAAGGCAAACAAGCTTTGGAACGGTTTTGATAAAATAAGCTCTATTTGAATAATAAGGGTATACAAATTTGCAAAATTGGCATCAGCTACTTTACTGT] consensusID : consensus_7592#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1154 fasta sequence [CCGGCTGGAACGATGGAACAAGAGATGATCGACATTGAAAGTTATCGTAAAACGGTGAAAAATTTTATTGATTTGCGTCGGTACCAGACAGCACTGTTTTGGGCCGAAAAAGTAACAGTTCTAAGCAATGGCGATCCGCGTGATGTTTACTGGGAGGCGCAGTGTATGTTTCTGCTGCGGGAATTTCACCGGGCAGCGCACACCATTCGAAGCCGATCGCTGGAGAAAACGAACCTGCTGTGTCACTATTTGGCCGCAGAGTGCTTGAATGAGGCGAAGGAATATCAATCAGCACTGGAGATCCTAAATTCGGTGGACTGCGAAACGCTATCGTATGCATTAAGTGGCAAAACTGGATCACATTCGTCCAGCATGAAGGACGATTCTACGACGGACGAGAGCTACGACGGAAGCATGTATGAGGATCCGTTCAAAAACGATATCATTGCATCGGTGTATTTTTTGAAGGGCAAAATACTGGAGTCGATGGATAATCGCAGCCTGGCAATGGACTGTTATGTTCAAGCGCTACACAAATCGGTTTACTGCTCCGAAGCGCTAGATGCTTTGGTGCAACACGACATGCTGATGGCTTGGGAGGAGAAAGAATTGATGCAACATATTCCAATGGCGCA-CAGTGCACAGAGCCAGAAAGAAAGGTTCTCAAGCGTCTGTACGAGAGTAAGCTGAAGAAATATTACGAATCGATCGCAATGCAAACTAACCTGGATGATCCACCCGTATCTTCGATGAACACTAGTTTATGGCATGAATTAAAGGAGAAGATGAAAAATTGTAAAAACAACGAGACAAGCAAATCATCAGTATCCAAAAGTTTCACTCCAGCTCCCCGCACAAAACAAAAGCAGAGGGAGATAATGTCACCGGCAAACAAAATTCTGGAGGACCTTAAAAACAATCCCTCCTATCTGATTCATACATCGTTGACTAGAGCATCACTGCTTGGTACAAGCCTAACAGGTGGCTCAACAATGCTCAGCGTAGGCGGGGCAAATAATTCTCGGCAGGAGACGCCTTTTAGAATCAATCGTCCCAAGCCAAATCCTGGCGCATCGGTAGTTTCGTACGAACAGTGCATGGAAAAGCTTGAATCAAGCATAGACCTAATGATCGCACGAGCTGAACAGTATTTT] [+] EMBL BM576735 [CCGGCTGGAACGATGGAACAAGAGATGATCGACATTGAAAGTTATCGTAAAACGGTGAAAAATTTTATTGATTTGCGTCGGTACCAGACAGCACTGTTTTGGGCCGAAAAAGTAACAGTTCTAAGCAATGGCGATCCGCGTGATGTTTACTGGGAGGCGCAGTGTATGTTTCTGCTGCGGGAATTTCACCGGGCAGCGCACACCATTCGAAGCCGATCGCTGGAGAAAACGAACCTGCTGTGTCACTATTTGGCCGCAGAGTGCTTGAATGAGGCGAAGGAATATCAATCAGCACTGGAGATCCTAAATTCGGTGGACTGCGAAACGCTATCGTATGCATTAAGTGGCAAAACTGGATCACATTCGTCCAGCATGAAGGACGATTCTACGACGGACGAGAGCTACGACGGAAGCATGTATGAGGATCCGTTCAAAAACGATATCATTGCATCGGTGTATTTTTTGAAGGGCAAAATACTGGAGTCGATGGATAATCGCAGCCTGGCAATGGACTGTTATGTTCAAGCGCTACACAAATCGGTTTACTGCTCCGAAGCGCTAGATGCTTTGGTGCAACACGACATGCTGATGGCTTGGGAGGAGAA ] [+] EMBL CNS08LM0 [ ttTGATGCGGGAATATAACCGGGCAGCGCACACCATTCGAAGCCGATCGCTGGAGAAAACGAACCTGTTGTGTCACTATTTGGCCGCAGAGTGCTTGAATGAGGCGAAGGAATATCAATCAGCACTGGAGATCCTAAATTCGGTGGACTGCGAAACGCTATCGTATGCATTAAGTGGCAAAACTGGTTCACATTCGTCCAGCATGAAGGACGATTCTACAACGGACGAGAGCTACGACGGAAGCATGTATGAGGATCCGTTCAAAAACGATATCATTGCATCGGTGTATTTTTTGAAGGGCAAAATACTGGAGTCAATGGATAATCGCAGCCTGGCAATGGACTGTTATGTTCAAGCGCTACACAAATCGGTTTACTGCTCCGAAGCGCTAGATGCTTTGGTGCAACACGACATGCTGATGGCTTGGGAGGAGAAAGAATTGATGCAACATATTCCAATGGCGCA CAGTGCACAGAGCCAGAAAGAAAGGTTCTCAAGCGTCTGTACGAGAGTAAGCTGAAGAAATATTACGAATCGATCGCAATGCAAACTAACCTGGATGAT ] [+] EMBL BM652744 [ cCGCAGCAGTGCACAGAGCCAGAAAGAAAGGTTCTCAAGCGTCTGTACGAGAGTAAGCTGAAGAAATATTACGAATCGATCGCTATGCAAACCAACCTGGATGATCCACCCGTATCTTCGATGAACACTAGTTTATGGCATGAATTAAAGGAGAAGATGAAAAATTGTAAAAACAACGAGACAAGCAAATCATCAGTATCCAAAAGTTTCACTCCAGCTCCCCGCACAAAACAAAAGCAGAGGGAGATAATGTCACCGGCAAACAAAATTCTGGAGGACCTTAAAAACAATCCCTCCTATCTGATTCATACATCGTTGACTAGAGCATCACTGCTTGGTACAAGCCTAACAGGTGGCTCAACAATGCTCAGCGTAGGCGGGGCAAATAATTCTCGGCAGGAGACGCCTTTTAGAATCAATCGTCCCAAGCCAAATCCTGGCGCATCGGTAGTTTCGTACGAACAGTGCATGGAAAAGCTTGAATCAAGCATAGACCTAATGATCGCACGAGCTGAACAGTATTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7592#0 -CCGCCCACGCGTCCGTGGAAAAGCTTGAATCAAGCATAGACCTAATGATCGCACGA-GC 58 consensus_7592#1 CCGGCTGGAACGATGGAACAAGAGAT--GATCGACATTGAAAGTTATCGTAAAACGGTGA 58 * ** ** * ** ** * *** * * * * ** * *** * consensus_7592#0 TGAACAGTATT--TTTACAGCTGTGACTATCGGCGATGCATCAAAATGTTGGAAGAAATT 116 consensus_7592#1 AAAATTTTATTGATTTGCGTCGGTACCAGACAGCACTGTTTTGGGCCGA-AAAAGTAACA 117 ** **** *** * * ** * * ** ** * * *** ** consensus_7592#0 CTGAAAAACGATCCCTATCACAAACGATCGCTTACGGTGCAGATTGGATGTTTGATGGAG 176 consensus_7592#1 GTTCTAAGCAATGGCGATC-CGCGTGAT-GTTTACTG-GGAGGCGCAGTGTATGTTTCTG 174 * ** * ** * *** * *** * **** * * ** *** ** * * consensus_7592#0 ATGAAAGACTTCAATCGGCTTTTCTATGTTGCTCACAAGCTTGTTGATTTTTATCCGGAC 236 consensus_7592#1 CTGCGGGAATTTCACCGGGCAGCGCACACCATTCG-AAGCCGATCGCTGGAGAAAACGAA 233 ** ** ** * *** * ** **** * * * * ** consensus_7592#0 GATGCCATCTCATGGTATG-CCGTGGGGTGCTACTATGATTTGATCGG-TAAAAGTGATC 294 consensus_7592#1 CCTGCTGTGTCACTATTTGGCCGCAGAGTGCTTGAATGAGGCGAAGGAATATCAATCAGC 293 *** * *** * ** *** * ***** **** ** * ** * * * * consensus_7592#0 CAGCGCGTCGTTATCTTTCCAAAGCAACCTCTCTCGACCGCCTGTACGGTCCGGCTTGGT 354 consensus_7592#1 ACTGGAGATCCTAAATTCGGTGGACTGCGAAACGCTATCGTATGCATTAAGTGGCAAAAC 353 * * ** ** * * * * * ** ** * *** consensus_7592#0 TGGCATACGGCCATTCGTTCGCAAAGGAAAACGAGCATG-ATCAGGCAATGGCAGCT-TA 412 consensus_7592#1 TGGATCA----CATTCGTCCAGCATGAAGGACGATTCTACGACGGACGAGAGCTACGACG 409 *** * ******* * * * * **** * * * * * ** * consensus_7592#0 TTTTAAGGCCACACAACTGATGCGCGGATGCCATC-TGCCACTGCTGTACATCGGAGTTG 471 consensus_7592#1 GAAGCATGTATGAGGATCCGTTCAAAAACGATATCATTGCATCGGTGTATTTT----TTG 465 * * * * * * * * *** * ** * **** * *** consensus_7592#0 AATGTGGGTTGACCAAAAACCATGCAATGGCTGAAAAATTTTTCTACCAAGCTATGTCCA 531 consensus_7592#1 AAGGGCAAAATACTGGAGTCGATG-GATAATCGCAGCCTGGCAATGGACTGTTATGTTCA 524 ** * ** * * *** ** * * * * * ***** ** consensus_7592#0 T-CGCTCCCCTGGACGTGTTCGTTTTGC-ACGAGCTAGGCGTGATCAAGTACGAGTGTGA 589 consensus_7592#1 AGCGCTACACAAATCGGTTTACTGCTCCGAAGCGCTAGATGCTTTGGTGCAACACGACAT 584 **** * * ** ** * * * * * ***** * * * * * consensus_7592#0 GCATTACGAATGTGCAGAGGAAGTTTTC-CGCAGCACGTTGGAAATGGTGCGCAATATGG 648 consensus_7592#1 GCTGATGGCTTGGGAGGAGAAAGAATTGATGCAACATATTCCAA-TGGCGCACAGTGCAC 643 ** * ** * *** *** ** *** ** ** ** *** ** ** * consensus_7592#0 TGAAGCAGAATAATGAACAGTTGACCGCCCGGTGGGAGCCATTGTTGAACAATTTGGGAC 708 consensus_7592#1 AGAGCCAGAAAGAAAGGTTCTCAAGCGTCTG-TACGAG---------AGTAAGCTGAAGA 693 ** ***** * * * ** * * * *** * ** ** consensus_7592#0 ACTGTTGCCGGAAAAATAAAAAGTACGAGGAAGCTCTGGAGTTCCACCGATGGGCTCTTT 768 consensus_7592#1 AATATTAC-GAATCGATCGCAA-TGCAAACTAACCTGGATGATCCACCCGTA---TCTTC 748 * * ** * * * ** ** * * * * * * * ****** * **** consensus_7592#0 CTCTGAAGCCGTTGAATGCTGCCACGTACACAGCTATCGGATTTGTGCAAGCGTTAATGG 828 consensus_7592#1 GATGAACACTAGTTTATGGCATGAATTAAAGGAGAAGATGAAAAATTGTAAAAACAACGA 808 * * * *** * ** * * ** * * ** * consensus_7592#0 GTCAATTATACGATGCAGTAGATTCA--TTCCACAAAAGTTTGTCTC-TGAAACGGGATG 885 consensus_7592#1 GACAAGCAAATCAT-CAGTATCCAAAAGTTTCACTCCAGCTCCCCGCACAAAACAAAAGC 867 * *** * * ** ***** * ** *** ** * * * **** * consensus_7592#0 ACGTGTTTACCACTACTGTACTGAAGTACGTTATCGAAGATCTGACAGAGGTGCAATCGC 945 consensus_7592#1 AGAGGGAGATAATGTCACCGGCAAACAAAATTCTGGAGGACCTTAAAAA----CAATC-C 922 * * * * * ** * ** * ** ** ** * * * ***** * consensus_7592#0 TTCCTTTCTATGCTGCGGAGGATGCCGAGGAAGATTGCGGCGATAAGGAAGGAGATCAAG 1005 consensus_7592#1 CTCCTATCT--GATTCATACATCGTTGACTAGAGCATCACTGCTTGGTAC--AAGCCTAA 978 **** *** * * * * * ** * * * * * * * * * consensus_7592#0 CAGAAAAGTCTAGGGACGAGAGTAAAACTTTAGACAAACTGAATACTTGCAATGTCACCG 1065 consensus_7592#1 CAGGTGGCTC----AACAATGCTCAG--CGTAGGCGGGGCAAATAATT-------CTCGG 1025 *** ** ** * * * *** * **** ** * * * consensus_7592#0 AAGGTGACAGCGAAGATGTTAGAGATAGTGCTCCACGACCTACCTTGCGCATGCAACTCA 1125 consensus_7592#1 CAGGAGACGCC-----TTTTAGAATCAATCGTCCCAAGCCAAATCCTGGCGCATCGGTAG 1080 *** *** * * ***** * * *** ** * ** * consensus_7592#0 ATTTTGACGAATGGTACACAAAAACGTCCCCCATGAGCGATACTAGTGCGGATGATATGA 1185 consensus_7592#1 TTTCGTACGAACAGTGCATGGAAAAG-CTTGAATCAAGCATAGACCTAATGATCGCACGA 1139 ** ***** ** ** *** * * ** * *** * *** * ** consensus_7592#0 GC--ATTGATATTTAGATTGAAGGCAAACAAGCTTTGGAACGGTTTTGATAAAATAAGCT 1243 consensus_7592#1 GCTGAACAGTATTTT--------------------------------------------- 1154 ** * ***** consensus_7592#0 CTATTTGAATAATAAGGGTATACAAATTTGCAAAATTGGCATCAGCTACTTTACTGT 1300 consensus_7592#1 --------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||