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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7599#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 760 fasta sequence
[AAATTCCTCCCGATCCCGTTCGTGGCTGTCGATAAAATGTACAGCTAAAGCAAACAGCAACAACAACAACAACGCCCCGCGGCAGGTTGGATGCGAAGCGCAGCACTTCAATCGACACCCGAGCACACCCACAGCCAACACAACGACGACGACGACCAGGCGGACAAAGACCAGGGCCAGAAGGGCGTTCCAGTCCAAGATGGAGTGTGACGATGCGGCCGTCGAGCGCCAGAAGCTGGTGTCGAACGACGAGGAGGACGACCAGAACACCATCACGAACCTGTCCTCGAGCGGGCAGGCCAAATCCGTACAGACGCCCATCTCGCCCGTGCTCAGCAATAAGCTGTTTTCCAGTGGCGAAACGAGCCGAAGTCAAAACTCCACCAGCTACTCGCTCGGGAAGGGAATCGCGACCGATGCGCCGCTGGCCACCAAGGTCAACTACGTGAACGAACGCAAGGCGCAGGATAGCAAGCCAAAGGCGAAGAAAATCCAACGAGAGGTACCCGACGTGCGGCACATGGAGCGGGCCCTGCTCGGGCTGCTGGAAGACTTCCATTCCGGGAAGCTGAAGGCGTTCGGTTCCGGCTGCACGATGGAGCAGATGACCTGCATACGGGAGCAGCAGGAAAGTTTGGCCAAGCTACACTTTGACCTTGGCATGACGGAAGCATTTACCGGTGGCAGCAACAACCCGAACAACGACAACGAGCTGCAAGCGCAAAGCAATATGAAGAAGCTGGTGCAAAAGCTGGAACAG]
[+] EMBL AGA284638 [AAATTCCTCCCGATCCCGTTCGTGGCTGTCGATAAAATGTACAGCTAAAGCAAACAGCAACAACAACAACAACGCCCCGCGGCAGGTTGGATGCGAAGCGCAGCACTTCAATCGACACCCGAGCACACCCACAGCCAACACAACGACGACGACGACCAGGCGGACAAAGACCAGGGCCAGAAGGGCGTTCCAGTCCAAGATGGAGTGTGACGATGCGGCCGTCGAGCGCCAGAAGCTGGTGTCGAACGACGAGGAGGACGACCAGAACACCATCACGAACCTGTCCTCGAGCGGGCAGGCCAAATCCGTACAGACGCCCATCTCGCCCGTGCTCAGCAATAAGCTGTTTTCCAGTGGCGAAACGAGCCGAAGTCAAAACTCCACCAGCTACTCGCTCGGGAAGGGAATCGCGACCGATGCGCCG ]
[+] EMBL BX609683 [ TGGAGTGTGACGATGCGGCCGTCGAGCGCCAGAAGCTGGTGTCGAACGACGAGGAGGACGACCAGAACACCATCACGAACCTGTCCTCGAGCGGGCAGGCCAAATCCGTACAGACGCCCATCTCGCCCGTGCTCAGCAATAAGCTGTTTTCCAGTGGCGAAACGAGCCGAAGTCAAAACTCCACCAGCTACTCGCTCGGGAAGGGAATCGCGACCGATGCGCCGCTGGCCACCAAGGTCAACTACGTGAACGAACGCAAGGCGCAGGATAGCAAGCCAAAGGCGAAGAAAATCCAACGAGAGGTACCCGACGTGCGGCACATGGAGCGGGCCCTGCTCGGGCTGCTGGAAGACTTCCATTCCGGGAAGCTGAAGGCGTTCGGTTCCGGCTGCACGATGGAGCAGATGACCTGCATACGGGAGCAGCAGGAAAGTTTGGCCAAGCTACACTTTGACCTTGGCATGACGGAAGCATTTACCGGTGGCAGCAACAACCCGAACAACGACAACGAGCTGCAAGCGCAAAGCAATATGAAGAAGCTGGTGCAAAAGCTGGAACAG]
[+] EMBL BX612411 [ GGAAGACTTCCATTCCGGGAAGCTGAAGGCGTTCGGTTCCGGCGGCACGATGGAGCAGAAGACCAGCATACGGGAGCAGCAGGAAAGTTGGGCCAAGCTACACTTTGACCTTGGCATGACGGAAG ]
consensusID : consensus_7599#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 720 fasta sequence
[CCGCCCACGCGTCCGAAAAACTCGAAAGCGAAAGTCGATCCGCGCTATTGTTTTTTTCAGGGGTCGATGCTGTACAAGGGGGGCGGGGGCAGGTATGAGTAATCTTTAAATTCCTCCCGATCCCGTTCATGGCTGTCGATAAAATGTACAGCTAAAGCAAACAGCAACAACAACAACAACGCCCCGCGGCAGGTTGGATGCGAAGCACAGCACTTCAATCGACACCCGAGCACACCCACAGCCAACACAACGACGACGACGACCAGGCGGACAAAGACCAGGGCCAGAAGGGCGTTCCAGTCCAAGATGGAGTGTGACGATGCGGCCGTCGAGCGCCAGAAGCTGGTGTCGAACGACGAGGAGGACGACCAGAACACCATCACGAACCTGTCCTCGAGCGGGCAGGCCAAATCCGTACAGACGCCCATCTCGCCCGTGCTCAGCAATAAGCTGTTTTCCAGTGGCGAAACGAGCCGAAGTCAAAACTCCACCAGCTACTCGCTCGGGAAGGGAATCGCGACCGATGCGCCGCTGGCCACCAAGGTCAACTACGTGAACGAACGCAAGGCGCAGGATAGCAAGCCAAAGGCGAAGAAAATCCAACGAGAGCTCACACCGTACCGGTGGCGTTCCGGTCACAGCCAATACCGCCCCTACTTCCACCATCACCGCTACCACCTGCCTCCACCAGCACCACCACCACCACCACCACAAACATCA]
[+] EMBL BM646336 [CCGCCCACGCGTCCGAAAAACTCGAAAGCGAAAGTCGATCCGCGCTATTGTTTTTTTCAGGGGTCGATGCTGTACAAGGGGGGCGGGGGCAGGTATGAGTAATCTTTAAATTCCTCCCGATCCCGTTCATGGCTGTCGATAAAATGTACAGCTAAAGCAAACAGCAACAACAACAACAACGCCCCGCGGCAGGTTGGATGCGAAGCACAGCACTTCAATCGACACCCGAGCACACCCACAGCCAACACAACGACGACGACGACCAGGCGGACAAAGACCAGGGCCAGAAGGGCGTTCCAGTCCAAGATGGAGTGTGACGATGCGGCCGTCGAGCGCCAGAAGCTGGTGTCGAACGACGAGGAGGACGACCAGAACACCATCACGAACCTGTCCTCGAGCGGGCAGGCCAAATCCGTACAGACGCCCATCTCGCCCGTGCTCAGCAATAAGCTGTTTTCCAGTGGCGAAACGAGCCGAAGTCAAAACTCCACCAGCTACTCGCTCGGGAAGGGAATCGCGACCGATGCGCCGCTGGCCACCAAGGTCAACTACGTGAACGAACGCAAGGCGCAGGATAGCAAGCCAAAGGCGAAGAAAATCCAACGAGAGCTCACACCGTACCGGTGGCGTTCCGGTCACAGCCAATACCGCCCCTACTTCCACCATCACCGCTACCACCTGCCTCCACCAGCACCACCACCACCACCACCAC ]
[+] EMBL BX603720 [ GACGACGACGACCAGGCGGACAAAGACCAGGGCCAGAAGGGCGTTCCAGTCCAAGATGGAGTGTGACGATGCGGCCGTCGAGCGCCAGAAGCTGGTGTCGAACGACGAGGAGGACGACCAGAACACCATCACGAACCTGTCCTCGAGCGGGCAGGCCAAATCCGTACAGACGCCCATCTCGCCCGTGCTCAGCAATAAGCTGTTTTCCAGTGGCGAAACGAGCCGAAGTCAAAACTCCACCAGCTACTCGCTCGGGAAGGGAATCGCGACCGATGCGCCGCTGGCCACCAAGGTCAACTACGTGAACGAACGCAAGGCGCAGGATAGCAAGCCAAAGGCGAAGAAAATCCAACGAGAGCTCACACCG ACAGGTGGCGTTCCGGTCACAGCCAATACCACCTCCACTTCCACCACCACCGCTACCACCT CCTCCACCAGCACCACCACCACCACCACCACAAACATCA]
consensusID : consensus_7599#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 718 fasta sequence
[AGCAATAAGCTGTTTCCAGTGGCGAAACGTACCGATGTCTTTAACCTCCACCAGNTTATCTCGCTCGGAAGGGAATCGCGACCGATGCGCCGCTTGCCACCCAAGGTCAAACTTACGTTGATCGTAACGCAAGGGCGCAGGATAGCAAGCCATAAGGCGATAGAGAATCCAACGAGAGGTACCCGACGTCGGCACATGGACGGCCCTGCTCGGGCTGCTGGAAGACTTCCATTCCGGGAAGCTGAAGGCGTTCGGTTCCGGCTGCACGATGGAGCAGATGACCAGCATACGGGAGCAGCAGGTAAAGTTTGGCCAAGCTACACTTTGACCTTGGCATGACGGAAGCATTTACCGGTGGCAGCAACNACCCGNACATACGACAACGAGNCTGCAAGCGCAAAGCAATATGAAGTAAGCTGGTGCAAAAGCTGGAACAGCTGTCCTTCTCGATCGAGAAGCTTCACTCGAGCAATGTGGAAAAGTGACCGCTTGACTGACACATCGTAGCAGGCAGGAGATTAGTCTTAGGATGCGCTGAGCCCAGCCGCGGATTGGGATGGGATGTGATTTTTTTTCTTCTAAAAATCGGTAATAACGTAAAAAGAGTGCCGAGGCGCCATTTTCTTTCCGTGGATCTTTCTACGGTGGTTACATTGAACTTTTTTTTTTGGGGTATTGAAGGGAAT-AAAACGCAAATTTTATGTAAAATAACCTGGGG]
[-] EMBL AL693357 [AGCAATAAGCTGTTTCCAGTGGCGAAACGTACCGATGTCTTTAACCTCCACCAGNTTATCTCGCTCGGAAGGGAATCGCGACCGATGCGCCGCTTGCCACCCAAGGTCAAACTTACGTTGATCGTAACGCAAGGGCGCAGGATAGCAAGCCATAAGGCGATAGAGAATCCAACGAGAGGTACCCGACGTCGGCACATGGACGGCCCTGCTCGGGCTGCTGGAAGACTTCCATTCCGGGAAGCTGAAGGCGTTCGGTTCCGGCTGCACGATGGAGCAGATGACCAGCATACGGGAGCAGCAGGTAAAGTTTGGCCAAGCTACACTTTGACCTTGGCATGACGGAAGCATTTACCGGTGGCAGCAACNACCCGNACATACGACAACGAGNCTGCAAGCGCAAAGCAATATGAAGTAAGCTGGTGCAAAAGCTGGAACAGCTGTCCTTCTCGATCGAGAAGCTTCACTCGAGCAATGTGGAAAAGTGACCGCTTGACTGACACATCGTAGCAGGCAGGAGATTAGTCTTAGGATGCGCTGAGCCCAGCCGCGGATTGGGATGGGATGTGATTTTTTTTCTTCTAAAAATCGGTAATAACGTAAAAAGAGTGCCGAGGCGCCATTTTCTTTCCGTGGATCTTTCTACGGTGGTTACATTGAACTTTTTTTTTTGGGGTATTGAAGGGAAT AAAACGCAAATTTTATGTAAAATAACCTGGGG]
[-] EMBL AGA281160 [ AGTGACCGCTTGACTGACACA CGTAGCAGGCAGGAGATTAGTCTTAGGATGCGCTGAGCCCAGCCGCGGATTGGGATGGGATGTGATTTTTTTTCTTCTAAAAATCGGTAATAACGTAAAAAGAGTGCCGAGGCGCCATTTTCTTTCCGTGGATCTTTCTACGGTGGTTACATTGAAC TTTTTTTTTGGGGTTTTGAAGGGAATAAAAACGCAAATTTTATGTTAAAAAAaa ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7599#0 ------------------------------------------------------------
consensus_7599#1 CCGCCCACGCGTCCGAAAAACTCGAAAGCGAAAGTCGATCCGCGCTATTGTTTTTTTCAG 60
consensus_7599#2 -------AGCAATAAGCTGTTTCCAGTGGCGAAACGTACCGATGTCTTTAACCTCCACCA 53
consensus_7599#0 -------------------------------------------------AAATTCCTCCC 11
consensus_7599#1 GGGTCGATGCTGTACAAGGGGGGCGGGGGCAG-GTATGAGTAATC-TTTAAATTCCTCCC 118
consensus_7599#2 GNTTATCTCGCTCGGAAGGGAATCGCGACCGATGCGCCGCTTGCCACCCAAGGTCAAACT 113
** ** *
consensus_7599#0 GATCCCGTTCGTGGCTGTCGATAAAATGTACAGCTAAAGCAAACAGCAACAACAACAACA 71
consensus_7599#1 GATCCCGTTCATGGCTGTCGATAAAATGTACAGCTAAAGCAAACAGCAACAACAACAACA 178
consensus_7599#2 TACGTTGATCGTAAC-GCAAGGGCGCAGGATAGC-AAGCCATAAGGCGATAGAGAATCCA 171
* * ** * * * * * *** ** ** * ** * * * **
consensus_7599#0 ACGCCCCGCGGCAGGT-TGGATGCGAAGCGCAGCACTTCAATCGACACCCGAGCACACCC 130
consensus_7599#1 ACGCCCCGCGGCAGGT-TGGATGCGAAGCACAGCACTTCAATCGACACCCGAGCACACCC 237
consensus_7599#2 ACGAGAGGTACCCGACGTCGGCAC-ATGGACGGCCCTGCTCGGGCTGCTGGAAGACTTCC 230
*** * * * * * * * * * ** ** * * * ** ** **
consensus_7599#0 A--CAGCCAACACAACGACGACGACGACCAGGCGGACAAAGACCAGGGCCAGAAGGGCGT 188
consensus_7599#1 A--CAGCCAACACAACGACGACGACGACCAGGCGGACAAAGACCAGGGCCAGAAGGGCGT 295
consensus_7599#2 ATTCCGGGAAGCTGAAGGCGTTCGGTTCCGGCTGCACGATGGAGCAGATGACCAGCATAC 290
* * * ** * * ** ** * * ** * * * * **
consensus_7599#0 TCCAGTCCAAGATGGAGTGTGACGATGCGGC-CGTCGAGC---GCCAGAAGCTGGTGTCG 244
consensus_7599#1 TCCAGTCCAAGATGGAGTGTGACGATGCGGC-CGTCGAGC---GCCAGAAGCTGGTGTCG 351
consensus_7599#2 GGGAGCAGCAGGTAAAGTTTGGCCAAGCTACACTTTGACCTTGGCATGACGGAAGCATTT 350
** ** * *** ** * * ** * * * ** * ** ** * * *
consensus_7599#0 AACGACGAGGAGGACGACCAGAACA--CCATCACGAACCTGTCCTCG---AGCGG-GCAG 298
consensus_7599#1 AACGACGAGGAGGACGACCAGAACA--CCATCACGAACCTGTCCTCG---AGCGG-GCAG 405
consensus_7599#2 ACCGGTGGCAGCAACNACCCGNACATACGACAACGAGNCTGCAAGCGCAAAGCAATATGA 410
* ** * ** *** * *** * * **** *** ** ***
consensus_7599#0 GCCAAATCCGTACAGACGCCCATCTCGCCCGTGCTCAGCAATAAGCTGTTTTCCAGTGGC 358
consensus_7599#1 GCCAAATCCGTACAGACGCCCATCTCGCCCGTGCTCAGCAATAAGCTGTTTTCCAGTGGC 465
consensus_7599#2 AGTAAGCTGGTGCAAAAGCTGGAACAGCTGTCCTTCTCGATCGAGAAGCTT--CACTCGA 468
** ** ** * ** ** ** * ** * ** ** * *
consensus_7599#0 GAAACGAGCCGAAGTCAAAACTCCACCAGCTACTCGCT-CGGGAAGGGAATCGCGACC-- 415
consensus_7599#1 GAAACGAGCCGAAGTCAAAACTCCACCAGCTACTCGCT-CGGGAAGGGAATCGCGACC-- 522
consensus_7599#2 GCAATGTGGAAAAGTGACCGCTTGACTGACACATCGTAGCAGGCAGGAGATTAGTCTTAG 528
* ** * * **** * ** ** * *** * ** *** **
consensus_7599#0 GATGCGCCGCTGGCCACCAAGGTCAACTACGTGAACGAACGCAAGGCGCAGGATAGCAAG 475
consensus_7599#1 GATGCGCCGCTGGCCACCAAGGTCAACTACGTGAACGAACGCAAGGCGCAGGATAGCAAG 582
consensus_7599#2 GATGCGCTGAGCCCAGCCGCGGATTGGGATGGGATGTGATTTTTTTTCTTCTAAAAATCG 588
******* * * ** ** * * ** * * * *
consensus_7599#0 CCAAAGGCGAAGAAAATCCAACGAGAGGTACCCGACGTGCGGCACATGGAGCGGGCCCTG 535
consensus_7599#1 CCAAAGGCGAAGAAAATCCAACGAGAGCT-CACACCGTACCGGTGGCGTTCCGGTCACAG 641
consensus_7599#2 GTAATAACGTAAAAAGAGTGCCGAGGCGCCATTTTCTTTCCGTGGATCTTTCTACGGTGG 648
** ** * *** **** * * * * * *
consensus_7599#0 CTC-GGGCTGCTGGAAGACTTCCATTCCGGGAAGCTGAAGGCGTTCGGTTCCGGCTGCAC 594
consensus_7599#1 CCA-ATACCGCCCCTA--CTTCCACCATCA----CCGCTACCACCTGCCTCCACCAGCAC 694
consensus_7599#2 TTACATTGAACTTTTTTTTTTGGGGTATTGAAGGGAATAAAACGCAAATTTTAT--GTAA 706
* ** * * *
consensus_7599#0 GATGGAGCAGATGACCTGCATACGGGAGCAGCAGGAAAGTTTGGCCAAGCTACACTTTGA 654
consensus_7599#1 CACCACCACCACCACC-ACAAACATCA--------------------------------- 720
consensus_7599#2 AATAACCTGGGG------------------------------------------------ 718
*
consensus_7599#0 CCTTGGCATGACGGAAGCATTTACCGGTGGCAGCAACAACCCGAACAACGACAACGAGCT 714
consensus_7599#1 ------------------------------------------------------------
consensus_7599#2 ------------------------------------------------------------
consensus_7599#0 GCAAGCGCAAAGCAATATGAAGAAGCTGGTGCAAAAGCTGGAACAG 760
consensus_7599#1 ----------------------------------------------
consensus_7599#2 ----------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||