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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7600#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 991 fasta sequence
[CCAGAATCGCCACGAGNTNATAAACATTTCGGCCGAGTCGCTCTCGTTGACGCAGGCCGAGTTCGATAGTTTCATGTCGGGCGAGCACGAGGGCACGTCGGCGTGGGAAAGTGCACTGATCGCATGCGAAAGCTTGCACCAGATATCAGAAAACATGAAGGTGATGAAAACGATTGCGGCGAAGAAGGAAGTGCTGTATAGCGGAATCA-TTGCGCTGAACGAAGAGATTGATACTTTTGGGCAAGAG-ATTCGACAAACGGTAGCGGAGGTGCTTGACCGCACACCGC-TCGTGCTATTGCCCTGCAAAACGCCGGCTCGCGTTGTGGCCATGCGACAGCAGTACCTGTCGTCCTCGGTCGGCGCCGGC-TACGTTGA-CCCTGACTCGGTACAGCCCGC-GCTCGG-TGGCGGCCATTTTACCTCAAACTTGGTAGCAGCCAACAAAACGGTCAACATTGAAGCTGCCAGCAGCAAACCAAAGACGGTGGTGGTCGGTACCGCATCCAACCATCAGCCTCCGGCGTCCGGTACGTCCGGTAGTAGCGCGGCCGGCGAGGTAGAACAGCTGGTGCAAAGTCTGTCCAACACGCTGACGACGCCGCTGGTGTCGGTCGATGCGGGGCCGCCGGAAACGGTCGCCCCGTCGTCACCGTTCTACGGTACGATGAGTGCGAGCAATTCGGCCGACCTGCTGTCGGCCTCGGGCCTCGGTTCGACTACAACAACATCTTCGATGCGCAATCGCTGGACGGGCTGGCCACGCCGGACGATCTGGCGACGGATTCATCCGCGGGNATACGCAACATCAACTACGACTTTGACTTTTCCGACCACAGGCGGCGAGAAACAGCACNTGCCGGAGGGGACTNTTTGGACGCCAACGGGGCCACCGTTTTAAAAGCCCGGGTTCCCAGGGCCGGTACCCGATTGAAACCGAACGAAAACCGGCCCAATACAACACCGGTTTGAATCTGGGAACGNCAGTTTGGATCCC]
[+] EMBL BX466614 [CCAGAATCGCCACGAGNTNATAAACATTTCGGCCGAGTCGCTCTCGTTGACGCAGGCCGAGTTCGATAGTTTCATGTCGGGCGAGCACGAGGGCACGTCGGCGTGGGAAAGTGCACTGATCGCATGCGAAAGCTTGCACCAGATATCAGAAAACATGAAGGTGATGAAAACGATTGCGGCGAAGAAGGAAGTGCTGTATAGCGGAATCA TTGCGCTGAACGAAGAGATTGATACTTTTGGGCAAGAG ATTCGACAAACGGTAGCGGAGGTGCTTGACCGCACACCGCGTCGTGCTATTGCCCTGCAAAACGCCGGCTCGCGTTGTGGCCATGCGACAGCAGTACCTGTCGTCCTCGGTCGGCGCCGGCATACGTTGAGCCCTGACTCGGTACAGACCGCAGCTCGGATGGCngg ]
[+] EMBL CNS09GB7 [ GCCGAGTCGCTCTCGTTGACGCAGGCCGAGTTCGATAGTTTCATGTCGGGCGAGCACGAGGGCACGTCGGCGTGGGAAAGTGCACTGATCGCATGCGAAAGCTTGCACCAGATATCAGAAAACATGAAGGTGATGAAAACGATTGCGGCGAAGAAGGAAGTGCTGTATAGCGGAATCA TTGCGCTGAACGAAGAGATTGATACTTTTGGGCAAGAGCATTCGACAAACGGTAGCGGAGGTGCTTGACCGCACACCGC TCGTGCTATTGCCCTGCAAAACGCCGGCTCGCGTTGTGGCCATGCGACAGCAGTACCTGTCGTCCTCGGTCGGCGCCGGC TACGTTGA CCCTGACTCGGTACAGCCCGC GCTCGG TGGCGGCCATTTTACCTCAAACTTGGTAGCAGCCAACAAAACGGTCAACATTGAAGCTGCCAGCAGCAAACCAAAGACGGTGGTGGTCGGTACCGCATCCAACCATCAGCCTCCGGCGTCCGGTACGTCCGGTAGTAGCGCGGCCGGCGAGGTAGAACAGCTGGTGCAAAGTCTGTCCAACACGCTGACGACGCCGCTGGTGTCGGTCGATGCGGGGCCGCCGGAAACGGTCGCCCCGTCGTCACCGTTCTACGGTACGATGAGTGCGAGCAATTCGGCCGACCTGCT ]
[+] EMBL BX467620 [ gcagaATCGCCACG AGGAGGAAGTGCTGTATAGCGGAATCACTTGCGCTGAACGAAGAGATTGATACTTTTGGGCAAGAG ATTCGACAAACGGTAGCGGAGGTGCTTGACCGTACGCCGC TCGTGCTATTGCCCTGCAAAACGCCGGCTCGCGTTGTGGCCATGCGACAGCAGTATCTGTCGTCCTCGGTCGGAGCCGGC TACGTTGA CCCTGACTCGGTACAGCCCGC GCTCGG TGGCGGCCATTTTACCTCAAACTTGGTAGCAGCCAACAAAACGGTCAACATTCAAGCTGCCAGCAGCAAACCAAAGACGGTGGTGGTCGGTACCGCATCCAACCATCAGCCTCCGGC A TCCGGTAGCAGCGCGGCCGGCGAGGTAGAACAGCTGGTGCAAAGTCTGTCCAACACGCTGACGACGCCGCTGGTGTCGGTCGATGCGGGGCCGCCGGAAACGGTCGCCCCGTCGTCACCGTTCTACGGTACGATGAGTGCGAGCAATTCGGCCGACCTACTGTCGGCCTCGGGCCTCGGTTCGACTACAACAACATCTTCGATGCGCAATCGCTGGACGGGCTGGCCACGCCGGACGATCTGGCGACGGATTCATCCGCGGGNATACGCAACATCAACTACGACTTTGACTTTTCCGACCACAGGCGGCGAGAAACAGCACNTGCCGGAGGGGACTNTTTGGACGCCAACGGGGCCACCGTTTTAAAAGCCCGGGTTCCCAGGGCCGGTACCCGATTGAAACCGAACGAAAACCGGCCCAATACAACACCGGTTTGAATCTGGGAACGNCAGTTTGGATCCC]
consensusID : consensus_7600#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 973 fasta sequence
[TAGCGCGGCCGGCGAGGTAGAACAGCTGGTGCAAAGTCTGTCCAACACGCTGACGACGCCGCTGGTGTCGGTCGATGCGGGGCCGCCGGAAACGGTCGCCCCGTCGTCACCGTTCTACGGTACGATGAGTGCGAGCAATTCGGCCGACCTGCTGTCGGCCTCGCCCTCGTTCGACTACAACAACATCTTCGATGCGCAATCGCTGGACGGGCTGGCCACGCCGGACGATCTGGC-GACGGATTTCATCCGCGGCATACGCAACATCAACTACGACTTTGACTTTTCCGACCACAGCGGGGAGAACAGCACGGCGGAGGACTTTGACCCGCGGGCCACGTTTAAACCGGTCCCGGCCGTACCGACGGAACCGACGAAACCGCCCATCACACCGTTCGATCTGGAAGAGTTTGATCCGCTGCTGCAGAAGGACGGGGCCGGCTCGACTGGTCAGCGTCCGGCGGAACCGTTGCTACCGCTACCGTTACAGCCATCGACGGTAGTGGCGAGTGGGGGTGCCGGTACCGGCGGTGGCAGTCTGCTGGATGATTCTCCCGGCTCACTGATGCTGGAGTCGCCGCTGAAACCGACCGTCGCCGACTTCCACGGGTTATCGCTGCACGGGTGCAACATTCCGACGATAACGTGCGCGACCGGCGTTCTACATCCTCCACCGGCCGGCGGTGGTGGTGGGAGCGGTGGGAGTGGACAGAATGGGCCAAAGGCTACGTCGAGCGGTCGGAACGCTAACAATGACACTAGCTTAATCTAGACCGGTGCAAACGAAAGGGGACGTTGGCGTTGATAGTGACTTGTTATTGTATATTGTTTGCAGCAGTGCGGAAGCACAGTGGACGGTTAAGATAAAAATGGAACAAAAATTGTTTGTTATTTGTTTAGTACAAGAAGAAGAAGGAGAAGAAGAAAAAAAATAAACACACTTATTTGCTAATTCAATCGAAAAAAAAAAAAAAAA]
[+] EMBL BX612697 [TAGCGCGGCCGGCGAGGTAGAACAGCTGGTGCAAAGTCTGTCCAACACGCTGACGACGCCGCTGGTGTCGGTCGATGCGGGGCCGCCGGAAACGGTCGCCCCGTCGTCACCGTTCTACGGTACGATGAGTGCGAGCAATTCGGCCGACCTGCTGTCGGCCTCGCCCTCGTTCGACTACAACAACATCTTCGATGCGCAATCGCTGGACGGGCTGGCCACGCCGGACGATCTGGC GACGGATTTCATCCGCGGCATACGCAACATCAACTACGACTTTGACTTTTCCGACCACAGCGGGGAGAACAGCACGGCGGAGGACTTTGACCCGCGGGCCACGTTTAAACCGGTCCCGGCCGTACCGACGGAACCGACGAAACCGCCCATCACACCGTTCGATCTGGAAGAGTTTGATCCGCTGCTGCAGAAGGACGGGGCCGGCTCGACTGGTCAGCGTCCGGCGGAACCGTTGCTACCGCTACCGTTACAGCCATCGACGGTAGTGGCGAGTGGGGGTGCCGGTACCGGCGGTGGCAGTCTGCTGGATGATTCTCCCGGCTCACTGATGCTGGAGTCGCCGCTGAAACCGACCGTCGCCGACTTCCACGGGTTATCGCTGCACGG ]
[-] EMBL CNS09GB8 [ TGGACGGGCTGGCCACGCCGGACGGTCTGGCGGAC GATTTCATCCGCGGCATACGCAACATCAACTACGACTTTGACTTTTCCGACCACAGCGGGGAGAACAGCACGGCGGAGGACTTTGACCCGCGGGCCACGTTTAAACCGGTCCCGGCCGTACCGACGGAACCGACGAAACCGCCCATCACACCGTTCGATCTGGAAGAGTTTGATCCGCTGCTGCAGAAGGACGGGGCCGGCTCGACTGGTCAGCGTCCGGCGGAACCGTTGCTACCGCTACCGTTACAGCCATCGACGGTAGTGGCGAGTGGGGGTGCCGGTACCGGCGGTGGCAGTCTGCTGGATGATTCTCCCGGCTCACTGATGCTGGAGTCGCCGCTGAAACCGACCGTCGCCGACTTCCACGGGTTATCGCTGCACGGGTGCAACATTCCGACGATAACGTGCGCGACCGGCGTTCTACATCCTCCACCGGCCGGCGGTGGTGGTGGGAGCGGTGGGAGTGGACAGAATGGGCCAAAGGCTACGTCGAGCGGTCGGAACGCTAACAATGACACTAGCTTAATCTAGACCGGTGCAAACGAAAGGGGACGTTGGCGTTGATAGTGACTTGTTATTGTATATTGTTTGCAGCAGTGCGGAAGCACAGTGGACGGTTAAGATAAAAATGGAACAAAAATTGTTTGTTATTTGTTTAGTACAAGAAGAAGAAGGAGAAGAAGAAAAAAAATAAACACACTTATTTGCTAATTCAATCGAAAAAAAAAAAAAAAA]
[-] EMBL BX611610 [ cCCGGCGGTGGTGGTGGGAGCGGTGGGAGTGGACAGAATGGGCCAAAGGTTACGTCGAGCGGTCGGAACGCTAACAATGACACTAGCTTAATCTAGACCGGTGCAAACGAAAGGGGACGTTGGCGTTGATAGTGACTTGTTATTGTATATTGTTTGCAGCAGTGCGGAAGCACAGTGGACAGTTAATATAAAAATGGAACAAAAATTGTTTGTTATTTGTTTAGTACAAGAAGAAGAAGGAGAAGAAGAAAAAAAATAAACACACTTATT ]
consensusID : consensus_7600#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 703 fasta sequence
[TTTTTCGATTGAATTAGCAAACAAGTGTGTTTATTTCCTCCTTCTTCTTCTTCTTGTACTAAACAAATAACAAACAATTTTTGTTCCATTTTTATCTTAACCGTCCACTGTGCTTCCGCACTGCTGCAAACAATATACAATAACAAGTCACTATCAACGCCAACGTCCCCTTTCGTATGCACCGGTCTAGATTAAGCTAGTGTCATTGTTAGCGTTCCGACCGCTCGACGTAGCCTTTGGCCCATTCTGTCCACTCCCACCGCTCCCACCACCACCGCCAGCCGGTGTAGGATGTAGAACGCCGGTCGCGCACGTTATCGTCGGAATGTTGCACCCGTGCAGCGATAACCCGTGGAAGTCGGCGACGGTCGGTTTCAGCGGCGACTCCAGCATCAGTGAGCCGGGAGAATCATCCAGCAGACTGCCACTGCCAGCACCGGCAGCCCCACTCGCCACTACCGTCGATGGCTGTAACGGTAGCGGTAGCAACGGTTCCGCCGGACGCTGACCAGTCGATCCGGCCCCGTCCTTTTGCAGCAGCGGATCAAACTCTTCCAGATCGAACGGTGTGATGGGCGGTTTCGTCGGTTCCGTCGGTACGGCCGGGACCGGTTTAAACGTGACCCGCGGGTCAAAGTCCTCCGCCGTGCTGTTCTCCCCGCTGTGGTCGGAAAAGTCAAAGTCCCAGTAGGCCAACAGTGCT]
[+] EMBL CNS091LP [TTTTTCGATTGAATTAGCAAACAAGTGTGTTTATTTCCTCCTTCTTCTTCTTCTTGTACTAAACAAATAACAAACAATTTTTGTTCCATTTTTATCTTAACCGTCCACTGTGCTTCCGCACTGCTGCAAACAATATACAATAACAAGTCACTATCAACGCCAACGTCCCCTTTCGTATGCACCGGTCTAGATTAAGCTAGTGTCATTGTTAGCGTTCCGACCGCTCGACGTAGCCTTTGGCCCATTCTGTCCACTCCCACCGCTCCCACCACCACCGCCAGCCGGTGTAGGATGTAGAACGCCGGTCGCGCACGTTATCGTCGGAATGTTGCACCCGTGCAGCGATAACCCGTGGAAGTCGGCGACGGTCGGTTTCAGCGGCGACTCCAGCATCAGTGAGCCGGGAGAATCATCCAGCAGACTGCCACTGCCAGCACCGGCAGCCCCACTCGCCACTACCGTCGATGGCTGTAACGGTAGCGGTAGCAACGGTTCCGCCGGACGCTGACCAGTCGATCCGGCCCCGTCCTTTTGCAGCAGCGGATCAAACTCTTCCAGATCGAACGGTGTGATGGGCGGTTTCGTCGGTTCCGTCGGTACGGCCGGGACCGGTTTAAACGTGACCCGCGGGTCAAAGTCCTCCGCCGTGCTGTTCTCCCCGCTGTGGTCGGAAAAGTCAAAGTCCCAGTAGGCCAACAGTGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7600#0 --------CCAGAATCGCCACG-AGNTNATAAACATTTCGGCCGAGTCGCTCTCGTTGAC 51
consensus_7600#1 TAGCGCGGCCGGCGAGGTAGAACAGCTGGTGCAAAGTCTGTCCAACACGCTGACGACGCC 60
consensus_7600#2 ------------------------------------------------------------
consensus_7600#0 GCAGGCCGAGTTCGATAGTTTCATGTCGGGCGAGCACGAGGGCACGTCGGCGTGGGAAAG 111
consensus_7600#1 GCTGGTGTCGGTCGATGCGGGGCCGCCGGAAACGGTCGCCCCGTCGTCACCGTTCTACGG 120
consensus_7600#2 ------------------------------------------------------------
consensus_7600#0 TGCACTGATCGCATGCGAAAGCTTGCACCAGATATCAGAAA-ACATGAAGGTGATGAAAA 170
consensus_7600#1 TACGATGAGTGCGAGCAATTCGGCCGACCTGCTGTCGGCCTCGCCCTCGTTCGACTACAA 180
consensus_7600#2 ------------------------------------------------------------
consensus_7600#0 CGATTGCGGCGAAGAAGGAAGTGCTGTATAGCGGAATCATTGCGCTGAACGAAGAGATTG 230
consensus_7600#1 CAACATCTTCGATGC-GCAATCGCTG---GACGGGCTGGCCACGCCGGACGATCTGGCGA 236
consensus_7600#2 ------------------------------------------------------------
consensus_7600#0 ATACTTTTGGGCAAGAGATTCGACAAA-CGGTAGCGGAGGTG-CT-TGACCGCACACCGC 287
consensus_7600#1 CGGATTTCATCCGCGGCATACGCAACATCAACTACGACTTTGACT-TTTCCGACCACAGC 295
consensus_7600#2 ------TTTTTCGATTGAATTAGCAAA-------CAAGTGTGTTTATTTCCTCCTTCTTC 47
* * * * * * ** * * ** * *
consensus_7600#0 TCGTGCTATTGCCCTGCAAA--ACGC-CGGCTCGCGTTGTGGCCATGCG-ACAGCAGTAC 343
consensus_7600#1 GGGGAGAACAGCACGGCGGAGGACTT-TGACCCGCG----GGCCACGTTTAAACCGGTCC 350
consensus_7600#2 TTCTTCTTGTACTAAACAAATAACAAACAATTTTTGTTCCATTTTTATCTTAACCGTCCA 107
* * * ** * * *
consensus_7600#0 CTGTCGTCCTCGGTCGGCGCCGGCTACGTTGACCCTGACTCGGTACAGCCCGCGCTCG-G 402
consensus_7600#1 CGGCCGTACC--GACGGAACCGACGAAACCGCCCATCACAC-----------CGTTCG-A 396
consensus_7600#2 CTGTGCTTCCGCACTGCTGCAAACAATAT--ACAATAACAAGTCACTATCAACGCCAACG 165
* * * * * * * * * * ** **
consensus_7600#0 TGGCGGCCATTTTACCTCAAACTTGGTAGCAGCCAACAAAACGGTCAACATTGAAGCTGC 462
consensus_7600#1 TCTGGAAGAGTTTGATCCG----CTGCTGCAG--AAGGACGGGGCCGGC--TCGACTGGT 448
consensus_7600#2 TCCCCTTTCGTATGCACCGGTCTAGATTA-AGCTAGTGTCATTGTTAGCGTTCCGACCGC 224
* * * * ** * * * * *
consensus_7600#0 CAGCAGCAAACCAAAGACGGTGGTGGTCGGTACCGCA--TCCAACCATCAGCCTCCGGCG 520
consensus_7600#1 CAGCGTCCGGC--GGAACCGTTGCTACCGCTACCGT---TACAGCCATC-------GACG 496
consensus_7600#2 TCGACGTAGCCTTTGGCCCATTCTGTCCACTCCCACCGCTCCCACCACCA----CCGCCA 280
* * * * * * ** * * *** * * *
consensus_7600#0 TCCGGTACGTCCGGTAGTAGCGCGGCCGGCGAGGTAGAACAGCTGG-TGCAAAGTCTGTC 579
consensus_7600#1 GTAGTGGCGAGTGGGGGTGCCGGTACCGGCGGTGGCAGTCTGCTGGATGATTCTCCCGGC 556
consensus_7600#2 GCCGGTGTAGGATGTAG-AACGCCGGTCGCGCACGTTATCGTCGGAATGTTGCACCCGTG 339
* * * ** *** * * * ** * *
consensus_7600#0 CAAC---ACGCTGACGACGCCGCTGGTG-TCGGTCGATGCGGGG--CCGCCGGAAACGGT 633
consensus_7600#1 TCACTG-ATGCTGGAGTCGCCGCTGAAA-CCGACCGTCGCCGACTTCCACGGGTTATCGC 614
consensus_7600#2 CAGCGATAACCCGTGGAAGTCGGCGACGGTCGGTTTCAGCGGCG--ACTCCAGCATCAGT 397
* * * * * * ** * ** ** * * * * *
consensus_7600#0 CGCCCCGTCGTCACCGTTCTACGGTACGATGAGTGCGAGCAATTCGGCCGACCTGCTGTC 693
consensus_7600#1 TGCACGGGTGCAACATTCCGACGATA--ACGTGCGCGACCGGCGTTCTACATCCTCCACC 672
consensus_7600#2 GAGCCGGGAG-AATCATCCAGCAG-ACTGCCACTGCCAGCA--CCGGCAGCCCCACTCGC 453
* * * * * * * * ** * * * * *
consensus_7600#0 GGCCTCGGGCCTCGGTTCGA-CTACAACAACATCTTCGATGC-GC-AATCGCTGGACGGG 750
consensus_7600#1 GGCCGGCGGTGGTGGTGGGAGCGGTGGGAGTGGACAGAATGG-GCCAAAGGCTACGTCGA 731
consensus_7600#2 CACTACCGTCGATGGCTGTAACGGTAGCGGTAGCAACGGTTCCGCCGGACGCTGACCAGT 513
* * ** * * * ** *** *
consensus_7600#0 CTGGCCACGCCGGACGATCTG--GCGACGGATTCATCCG---CGG-GNATACGCAA---- 800
consensus_7600#1 GCGGTCGGAACGCTAACAATG--ACACTAGCTTAATCTAGACCGGTGCAAACGAAAGGGG 789
consensus_7600#2 CGATCCGGCCCCGTCCTTTTGCAGCAGCGGATCAAACTCTTCCAGATCGAACGG------ 567
* * ** * * * * * * * ***
consensus_7600#0 -CATCAACTACGACTTTGACTTTTCCGACCACAGGCGGCGAGAAACAGCACNTGC-CGGA 858
consensus_7600#1 ACGTTGGCGTTGATAGTGACTTGTT--ATTGTATATTGTTTGCAGCAGTGCGGAAGCACA 847
consensus_7600#2 -TGTGATGGGCGGTTTCGTCGGTTCCGTCGGTA--CGGCCGGGACCGGT--TTAAACGTG 622
* * * * * * * * * * * *
consensus_7600#0 GGGGACTNTTTGGACGCCAACGGGGCCACCGTTTTAAAAGCCCGGGTTCCCAGGGCCGGT 918
consensus_7600#1 GTGGACGGTTAAGATAAAAATGGAACAAAAATTGTTTGTTATTTGTTTAGTACAAGAAGA 907
consensus_7600#2 ACCCGCGGGTCAAAGTCCTCCGCCGT-GCTGTTCTCCCCGCTGTGGTCGGAAAAGTCAAA 681
* * * * ** * * * *
consensus_7600#0 ACCCGATTGAAACCGAACGAAAACCGGCCCAATACAACACCGGTTTGAATCTGGGAACGN 978
consensus_7600#1 AGAAGGA-GAAGAAGAAAAAAAATAAACACACTTATTTGCTAATTC-AATCGAAAAAAAA 965
consensus_7600#2 GTCCCA--GTAGGCCAACAGTGCT------------------------------------ 703
* * **
consensus_7600#0 CAGTTTGGATCCC 991
consensus_7600#1 AAAAAAAA----- 973
consensus_7600#2 -------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||