|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7609#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 928 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGTGCTTGCTTGCTTGGTGGGACTACACGTGTTGGCTTAAAAATGGCTAAAAAGAATCAAATCAAAACGGAAAGTGTGGCGACTGCTGAGAAATCAGAAGCCATGGAAGTGGCGAAGAAAAAAGGCAAGCAACAAAAGCGTACCGAGAATGGCGACGCAGTAATGAAAACGAAAGGCAACGGGGTGGCTGCAGCTAAACCCGAGAAGAAAAAGAATGAAAAGCCAAACAAAAAGCGACCCGCTCAGTCGGCGGCGCAGCAGCAGGATGATGATGATGCGATGGGGGAGGAAACGGCCGTACCGGCCAAGGTGTCGAAGAAAGCGGCCGGCAACGGGGACTTGATCATGGGCGGTACGACCATTGACCAGGTCACCGGCATCAACCTGCAGAAGAAGACAAAAAAGAGCCGCAAAGTGAAGCAGCGCGAAAAGCTTGGCACCAAGGGGGCGAAGGTGCCGGCCAAGTCGAATGAGAAGCTACAGAAGGAAGCGCTCGAGTATCTGGACACCTGGGGCAAGAACCGGCAGGAGTGGAAGTTTAGCAAGCTGAAGCAGATCTACATCCAGGAGCACGTGTTCGACGATTCCTTCATCGGCGAGGAGGCGTGGCCGATCGCGGTGGAGTATTTGAGCAAAACACAGGGCTTCGCCAGGGACCTGTTGACGGCTAAAGCGAAAGCCATTATCAAGAAGGGGGATGTGAATATGAAGGTGCAGGATAGCGCGAATTACAAGCGTGCCCGGGAGCTGCTGCAATGTTTGGGATGAAGGAGAGAGAAAAAGTTATTAAAATAAAACCATAAAAAAACGTCATGCCCGTAGCGGCATGTGGATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATTTC]
[+] EMBL BM608070 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGTGCTTGCTTGCTTAGTGGGACTACACGTGTTGGCTTAAAAATGGCTAAAAAGAATCAAATCAAAACGGAAAGTGTGGCGACTGCTGAGAAATC AGCCATGGAAGTGGCGAAGAAAAAAGGCAAGCAACAAAAGCGTACCGAGAATGGCGACGCAGTAATGAAAACGAAAGGCAACGGGGTGGCTGCGGCTAAACCGGAGAAGAAAAAGAATGAAAAGCCAAACAAAAAGCGACCCGCTCAGTCGGCGGCGCAGCAGCAGGATGAGGATGATGCGATGGGAGAGGAAACGGCCGTACCGGCCAAGGTGTCGAAGAAAGCGGCCGGCAACGGGGACTTGATCATGGGCGGTACGACCATTGACCAGGTCACCGGCATCAACCTGCAGAAGAAGACAAAAAAGAGCCGCAAAGTGAAGCAGCGCGAAAAGCTTGGCACCAAGGGGGCGAAGGTACCGGCCAAGTCGAATGAGAAGCTACAGAAGGAAGCGCTCGAGTATCTGGACACCTGGGGCAAGAACCGGCAGGAGTGGAAGTTTAGCAAGCTGAAGCAGATCTACATCCAGGAGCACGTGTTCGACGATTCCTTCA ]
[+] EMBL BM615914 [ CCGCCCACGCGTCCGCCCACGCGTCCG GCTTGCTTGCTTGGTGGGACTACACGTGTTGGCTTAAAAATGGCTAAAAAGAATCAAATCAAAACGGAAAGTGTGGCGACTGCTGAGAAATCAGAAGCCATGGAAGTGGCGAAGAAAAAAGGCAAGCAACAAAAGCGTACCGAGAATGGCGACGCAGTAATGAAAACGAAAGGCAACGGGGTGGCTGCAGCTAAACCCGAGAAGAAAAAGAATGAAAAGCCAAACAAAAAGCGACCCGCTCAGTCGGCGGCGCAGCAGCAGGATGATGATGATGCAATGGGGGAGGAAACGGCCGTACCGGCCAAGGTGTCGAAGAAAGCGGCCGGCAACGGGGACTTGATCATGGGCGGTACAACCATTGACCAGGTCACCGGCATCAACCTGCAGAAGAAGACAAAAAAGAGCCGCAAAGTGAAGCAGCGCGAAAAGCTTGGCACCAAGGGGGCGAAGGTGCCGGCCAAGTCGAATGAGAAGCTACAGAAGGAAGCGCTCGAGTATCTGGACACCTGGGGCAAGAACCGACAGGAGTGGAAGTTTAGCAAGCTGAAGCAGATCTACATCCAGGAGCACGTGTTCGACG ]
[+] EMBL BM596639 [ CCGTGCTTGCTTGCTTGGTGGGACTACACGTGTTGGCTTAAAAATGGCTAAAAAGAATCAAATCAAAACGGAAAGTGTGGCGACTGCTGAGAAATCAGAAGCCATGGAAGTGGCGAAGAAAAAAGGCAAGCAACAAAAGCGTACCGAGAATGGCGACGCAGTAATGAAAACGAAAGGCAACGGGGTGGCTGCAGCTAAACCCGAGAAGAAAAAGAATGAAAAGCCAAACAAAAAGCGACCCGCTCAGTCGGCGGCGCAGCAGCAGGATGATGATGATGCAATGGGGGAGGAAACGGCCGTACTGGCCAAGGTGTCGAAGAAAGCGGCCGGCAACGGGGACTTGATCATGGGCGGTACAACCATTGACCAGGTCACCGGCATCAACCTGCAGAAGAAGACAAAAAAGAGCCGCAAAGTGAAGCAGCGCGAAAAGCTTGGCACCAAGGGGGCGAAGGTGCCGGCCAAGTCGAATGAGAAGCTACAGAAGGAAGCGCTCGAGTATCTGGACACCTGGGGCAAGAACCGACAGGAGTGGAAGTTTAGCAAGCTGAAGCAGATCTACATCCAGGAGCACGTGTTCGACGATTCCTTCATCGGCGA ]
[+] EMBL BM644232 [ ccgAGCTAAACCCGAGAAGAAAAAGAATGAAAAGCCAAACAAAAAGCGACCCGCTCAGTCGGCGGCGCAGCAGCAGGATGATGATGATGCGATGGGGGAGGAAACGGCCGTACCGGCCAAGGTGTCGAAGAAAGCGGCCGGCAACGGGGACTTGATCATGGGCGGTACGACCATTGACCAGGTCGCGGGCATCAACCTGCAGAAGAAGACAAAAAAGAGCCGCAAAGTGAAGCAGCGCGAAAAGCTTGGCACCAAGGGGACAAAGGTACCGGCCAAGTCGAATGAGAAGCTACAGAAGGAAGCGCTCGAGTATCTGGACACCTGGGGCAAGAACCGGCAGGAGTGGAAGTTTAGCAAGCTGAAGCAGATCTACATCCAGGAGCACGTGTTCGACGATTCCTTCATCGGCGAGGAGGCGTGGCCGATCGCGGTGGAGTATTTGAGCAAAACACAGGGCTTCGCCAGGGACCTGTTGACGGCTAAAGCGAAAGCCATTATCAAGAAGGGGGATGTGAATATGAAGGTGCAGGATAGCGCGAATTACAAGCGTGCCCGGGAGCTGCTGCAATGTTTGGGATGAAGGAGAGAGAAAAAGTTATTAAAATAA ]
[+] EMBL CNS095Q0 [ CCGCAAAGTGAAGCAGCGCGAAAAGCTTGGCACCAAGGGGGCGAAGGTGCCGGCCAAGTCGAATGAGAAGCTACAGAAGGAAGCGCTCGAGTATCTGGACACCTGGGGCAAGAACCGGCAGGAGTGGAAGTTTAGCAAGCTGAAGCAGATCTACATCCAGGAGCACGTGTTCGACGATTCCTTCATTGGCGAGGAGGCGTGGCCGATCGCGGTGGAGTATTTGAGCAAAACGCAGGGCTTCGCCAGGGACCTGTTGACGGCTAAAGCGAAAGCCATTATCAAGAAGGGGGATGTGAATATGAAGGTGCAGGATAGCACGAATTACAAGCGTGCCCGGGAGCTGCTGCAATGTTTGGGATGAAGGCGAGAGAGAAAATTATTAAAATAAAACCATAAAAAAACGTCATGCCCGTAGCGGCATGTGGATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATTTC]
consensusID : consensus_7609#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 832 fasta sequence
[CGCGTTTAATNTTGGCTTAAAAATGGCTCAAAAGATAAATCANAACGGAAAGTGTGGCGACTGCTGAGAAATCAGAAGCCATGGAAGTGGCGAAGAAAAAAGGCAAGCAACAAAAGCGTACCGAGAATGGCGACGCAGTAATGAAAACGAAAGGCAACGGGGTGGCTGCAGCTAAACCCGAGAAGAAAAAGAATGAAAAGCCAAACAAAAAGCGACCCGCTCAGTCGGCGGCGCAGCAGCAGGATGATGATGATGCGATGGGAGAGGAAACGGCCGTACCGGCCAAGGTGTCGAAGAAAGCGGCCGGCAACGGGGACTTGATCATGGGCGGTACGACTATTGACCAGGTCACCGGATCAACCTGCAGAACGAAGACAAACAAAGAGCCGCAAAGTGAAGCAGCGCGAAAAGCTTGGCACCAACGGGGGCGAAGGTGCCGGCCAAGCTCGAACTGAGAAGCTACAGAAGGAAGCGCTCGAGTATCTGGACACCTGGNGGCAAGAACCGGCAGGAGCTGGAAGTTNAGCAAGCTGACAGCAGATCTACATCCAGGAGCACGTGTCGACGATTCCTTCAATCGGCGACGAAAGCCGTGGACCCGATCGCGCGCTGCGACGCTACTTCGCAGCCANANANCCACACACGGCCTATTCCGCCCCAGGCAACCTTGCTCGAACNGCTAAAGCCGACAAGCCCACTAATCAANCACNCGGCNCNATGGTGAACTACTNACNGCGTGCNCGGACTAAGCCGCCACNCTTACACCGCGCTCCCGNCNCNGACCTGCTNCCACTGCTCCTGCGATCACNCCGCCACCACCACAACCCCCTCC]
[+] EMBL AL694405 [CGCGTTTAATNTTGGCTTAAAAATGGCTCAAAAGATAAATCANAACGGAAAGTGTGGCGACTGCTGAGAAATCAGAAGCCATGGAAGTGGCGAAGAAAAAAGGCAAGCAACAAAAGCGTACCGAGAATGGCGACGCAGTAATGAAAACGAAAGGCAACGGGGTGGCTGCAGCTAAACCCGAGAAGAAAAAGAATGAAAAGCCAAACAAAAAGCGACCCGCTCAGTCGGCGGCGCAGCAGCAGGATGATGATGATGCGATGGGAGAGGAAACGGCCGTACCGGCCAAGGTGTCGAAGAAAGCGGCCGGCAACGGGGACTTGATCATGGGCGGTACGACTATTGACCAGGTCACCGGATCAACCTGCAGAACGAAGACAAACAAAGAGCCGCAAAGTGAAGCAGCGCGAAAAGCTTGGCACCAACGGGGGCGAAGGTGCCGGCCAAGCTCGAACTGAGAAGCTACAGAAGGAAGCGCTCGAGTATCTGGACACCTGGNGGCAAGAACCGGCAGGAGCTGGAAGTTNAGCAAGCTGACAGCAGATCTACATCCAGGAGCACGTGTCGACGATTCCTTCAATCGGCGACGAAAGCCGTGGACCCGATCGCGCGCTGCGACGCTACTTCGCAGCCANANANCCACACACGGCCTATTCCGCCCCAGGCAACCTTGCTCGAACNGCTAAAGCCGACAAGCCCACTAATCAANCACNCGGCNCNATGGTGAACTACTNACNGCGTGCNCGGACTAAGCCGCCACNCTTACACCGCGCTCCCGNCNCNGACCTGCTNCCACTGCTCCTGCGATCACNCCGCCACCACCACAACCCCCTCC]
consensusID : consensus_7609#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence
[CCGCCCACGCGTCCGCACGTGTTGGCTTAAAAATGGCTAAAAAGAATCAAATCAAAACGGAAAGTGTGGCGACTGCTGAGAAATCAGAAGCCATGGAAGTGGCGAAGAAAAAAGGCAAGCAACAAAAGCGTACCGAGAATGGCGACGCAGTAATGAAAACGAAAGGCAACGGGGTGGCTGCAGCTAAACCCGAGAAGAAAAAGAATGAAAAGCCAAACAAAAAGCGACCCGCTCAGTCGGCGGCGCAGCAGCAGGATGATGATGATGCGATGGGGGAGGAAACGGCCGTACCGGCCAAGGTGTCGAAGAAAGCGGCCGGCAACGGGGACTTGATCATGGGCGGTACGACCATTGACCAGGTCGCGGGCATCAACCTGCAGAAGAAGACAAAAAAGAGCCGCAAAGTGAAGCAGCGCGAAAAGCTTGGCACCAAGGGGACAAAGGTACCGGCCAAGTCGAATGAGAAGCTACAGAAGGAAGCGCTCGAGTATCTGGACACCTGGGGCAAGAACCGGCAGGAGTGGAAGTTTAGCAAGCTGAAGCAGATCTACATCCAGGAGCACGTGTTCGACGATTCCTTCATCGGCGAGGAGGCGTGGCCGATCGCGGTGGAGTATTTGAGCAAAACACAGGGCTTCGCCAGGGACCTGTTGACGGCTAAAGCGAAAGCCATTATC]
[+] EMBL BM591519 [CCGCCCACGCGTCCGCACGTGTTGGCTTAAAAATGGCTAAAAAGAATCAAATCAAAACGGAAAGTGTGGCGACTGCTGAGAAATCAGAAGCCATGGAAGTGGCGAAGAAAAAAGGCAAGCAACAAAAGCGTACCGAGAATGGCGACGCAGTAATGAAAACGAAAGGCAACGGGGTGGCTGCAGCTAAACCCGAGAAGAAAAAGAATGAAAAGCCAAACAAAAAGCGACCCGCTCAGTCGGCGGCGCAGCAGCAGGATGATGATGATGCGATGGGGGAGGAAACGGCCGTACCGGCCAAGGTGTCGAAGAAAGCGGCCGGCAACGGGGACTTGATCATGGGCGGTACGACCATTGACCAGGTCGCGGGCATCAACCTGCAGAAGAAGACAAAAAAGAGCCGCAAAGTGAAGCAGCGCGAAAAGCTTGGCACCAAGGGGACAAAGGTACCGGCCAAGTCGAATGAGAAGCTACAGAAGGAAGCGCTCGAGTATCTGGACACCTGGGGCAAGAACCGGCAGGAGTGGAAGTTTAGCAAGCTGAAGCAGATCTACATCCAGGAGCACGTGTTCGACGATTCCTTCATCGGCGAGGAGGCGTGGCCGATCGCGGTGGAGTATTTGAGCAAAACACAGGGCTTCGCCAGGGACCTGTTGACGGCTAAAGCGAAAGCCATTATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7609#0 CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGTGCTTGCTT 60
consensus_7609#2 ----------------------------------------------------------CC 2
consensus_7609#1 ------------------------------------------------------------
consensus_7609#0 GCTTGGTGGGACTACACGTGTTGGCTTAAAAATGGCTAAAAAGAATCAAATCAAAACGGA 120
consensus_7609#2 GCCCA-CGCGTCCGCACGTGTTGGCTTAAAAATGGCTAAAAAGAATCAAATCAAAACGGA 61
consensus_7609#1 ------CGCGTTTA---ATNTTGGCTTAAAAATGGCTCAAAAGA--TAAATCANAACGGA 49
* * * ***************** ****** ****** ******
consensus_7609#0 AAGTGTGGCGACTGCTGAGAAATCAGAAGCCATGGAAGTGGCGAAGAAAAAAGGCAAGCA 180
consensus_7609#2 AAGTGTGGCGACTGCTGAGAAATCAGAAGCCATGGAAGTGGCGAAGAAAAAAGGCAAGCA 121
consensus_7609#1 AAGTGTGGCGACTGCTGAGAAATCAGAAGCCATGGAAGTGGCGAAGAAAAAAGGCAAGCA 109
************************************************************
consensus_7609#0 ACAAAAGCGTACCGAGAATGGCGACGCAGTAATGAAAACGAAAGGCAACGGGGTGGCTGC 240
consensus_7609#2 ACAAAAGCGTACCGAGAATGGCGACGCAGTAATGAAAACGAAAGGCAACGGGGTGGCTGC 181
consensus_7609#1 ACAAAAGCGTACCGAGAATGGCGACGCAGTAATGAAAACGAAAGGCAACGGGGTGGCTGC 169
************************************************************
consensus_7609#0 AGCTAAACCCGAGAAGAAAAAGAATGAAAAGCCAAACAAAAAGCGACCCGCTCAGTCGGC 300
consensus_7609#2 AGCTAAACCCGAGAAGAAAAAGAATGAAAAGCCAAACAAAAAGCGACCCGCTCAGTCGGC 241
consensus_7609#1 AGCTAAACCCGAGAAGAAAAAGAATGAAAAGCCAAACAAAAAGCGACCCGCTCAGTCGGC 229
************************************************************
consensus_7609#0 GGCGCAGCAGCAGGATGATGATGATGCGATGGGGGAGGAAACGGCCGTACCGGCCAAGGT 360
consensus_7609#2 GGCGCAGCAGCAGGATGATGATGATGCGATGGGGGAGGAAACGGCCGTACCGGCCAAGGT 301
consensus_7609#1 GGCGCAGCAGCAGGATGATGATGATGCGATGGGAGAGGAAACGGCCGTACCGGCCAAGGT 289
********************************* **************************
consensus_7609#0 GTCGAAGAAAGCGGCCGGCAACGGGGACTTGATCATGGGCGGTACGACCATTGACCAGGT 420
consensus_7609#2 GTCGAAGAAAGCGGCCGGCAACGGGGACTTGATCATGGGCGGTACGACCATTGACCAGGT 361
consensus_7609#1 GTCGAAGAAAGCGGCCGGCAACGGGGACTTGATCATGGGCGGTACGACTATTGACCAGGT 349
************************************************ ***********
consensus_7609#0 CACCGGCATCAACCTGCAGAA-GAAGACAAA-AAAGAGCCGCAAAGTGAAGCAGCGCGAA 478
consensus_7609#2 CGCGGGCATCAACCTGCAGAA-GAAGACAAA-AAAGAGCCGCAAAGTGAAGCAGCGCGAA 419
consensus_7609#1 CACCGG-ATCAACCTGCAGAACGAAGACAAACAAAGAGCCGCAAAGTGAAGCAGCGCGAA 408
* * ** ************** ********* ****************************
consensus_7609#0 AAGCTTGGCACCAA-GGGGGCGAAGGTGCCGGCCAAG-TCGAA-TGAGAAGCTACAGAAG 535
consensus_7609#2 AAGCTTGGCACCAA-GGGGACAAAGGTACCGGCCAAG-TCGAA-TGAGAAGCTACAGAAG 476
consensus_7609#1 AAGCTTGGCACCAACGGGGGCGAAGGTGCCGGCCAAGCTCGAACTGAGAAGCTACAGAAG 468
************** **** * ***** ********* ***** ****************
consensus_7609#0 GAAGCGCTCGAGTATCTGGACACCTGGGG-CAAGAACCGGCAGGAG-TGGAAGTTTAGCA 593
consensus_7609#2 GAAGCGCTCGAGTATCTGGACACCTGGGG-CAAGAACCGGCAGGAG-TGGAAGTTTAGCA 534
consensus_7609#1 GAAGCGCTCGAGTATCTGGACACCTGGNGGCAAGAACCGGCAGGAGCTGGAAGTTNAGCA 528
*************************** * **************** ******** ****
consensus_7609#0 AGCTGA-AGCAGATCTACATCCAGGAGCACGTGTTCGACGATTCCTTCA-TCGGCGAGGA 651
consensus_7609#2 AGCTGA-AGCAGATCTACATCCAGGAGCACGTGTTCGACGATTCCTTCA-TCGGCGAGGA 592
consensus_7609#1 AGCTGACAGCAGATCTACATCCAGGAGCACGTGT-CGACGATTCCTTCAATCGGCGACGA 587
****** *************************** ************** ******* **
consensus_7609#0 GG--CGTGG--CCGATCGCG-GTGGAGTATTTGAGCAAAACACAGGGCTTCGCCAGGGAC 706
consensus_7609#2 GG--CGTGG--CCGATCGCG-GTGGAGTATTTGAGCAAAACACAGGGCTTCGCCAGGGAC 647
consensus_7609#1 AAGCCGTGGACCCGATCGCGCGCTGCGACGCTACTTCGCAGCCANANANCCACACACGGC 647
***** ********* * * * * * ** * * * *
consensus_7609#0 CTGTTGACGGCTAAAGCGA--------AAGCCATTATCAAGAAGGGGGATGTGAAT--AT 756
consensus_7609#2 CTGTTGACGGCTAAAGCGA--------AAGCCATTATC---------------------- 677
consensus_7609#1 CTATTC-CGCCCCAGGCAACCTTGCTCGAACNGCTAAAGCCGACAAGCCCACTAATCAAN 706
** ** ** * * ** * * * **
consensus_7609#0 GAAGGTGCAGGATAGCGCGA-ATTACAAGCGTGCCCGGGAGCTGCTGCAATGTTTGGGAT 815
consensus_7609#2 ------------------------------------------------------------
consensus_7609#1 CACNCGGCNCNATGGTGAACTACTNACNGCGTGCNCGGACTAAGCCGCCACNCTTACACC 766
consensus_7609#0 GAAGGAGAGAGAAAAAGTTATTAAAATAAAACCATAAA--AAAACGTCATGCCCGTAGCG 873
consensus_7609#2 ------------------------------------------------------------
consensus_7609#1 GCGCTCCCGNCNCNGACCTGCTNCCACTGCTCCTGCGATCACNCCGCCACCACCACAACC 826
consensus_7609#0 GCATGTGGATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATTTC 928
consensus_7609#2 -------------------------------------------------------
consensus_7609#1 CCCTCC------------------------------------------------- 832
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||