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Anopheles gambiae
cluster # 7617 cluster # 7617       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7617#0 length = 906 sequences # 3  
consensus_7617#1 length = 723 sequences # 4  

consensusID : consensus_7617#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 906
fasta sequence
                              [CGAGCGAACAAACATGACATTACATGAAAGTGGCGAAAACT---A--TCGTAGTGC-ACGAAATCACACGATCCGGGCTGGAACGATCCGCCCCCGATACCGACGAGCCACAAACCGAGGGCTGGCGGTGCCAAAGCCGACAAGAAGCAGGAGGAGAATGCCGCCCCCGCCACCGAGGACAGCTTGCCGGAGCGGGAGGAGATGATCGGCCAGATACGGACCGTGTTCGATGGGTACGTGCAGCAGCTGGAGGAGTCACGCCGGGCGAATGTGCAAAAGCGTATCGATCTGCTGTACGACCAGTGGGCGAAGGGCACGCTGCCGGAACAGCTGGAAGCCCTGATCTACCGCCTGTCCGCTGCCCTGCTCGATGAGGACGACGTGCGTGCGAACGTGCTGCACCGCACGATCGTGTGTGATCACGCCGGCAA-GTGCGCCCAGTGGGC-CCGGTGCTGCGTCA-CTGATCTTTGTCCTGCAGCTGCGCAACGAGCAGACGAAACCCGTCGTCGCCGACCAGATCGTGCAGCCGCTGTAGCGGGAAAGAGACGACGCAGACTGATAACGGGCAGGGATGAATGGCCCCCAGCTCAAGCCGGTGAGATCAGGAAGTATGTTTAATTGTTTCACGTATAGGATAGGAAAAGTACATTATGATGCAGAGCATGATATAGGCATATAGTATGCAATTTTGGGGGGGAAAGCCCACAGGCAAGGAAGAGAAATACACTGGCAGACAAACAATAATTACCCAGCCGTTAGTGCGAAATGCGAAGAGTGAAAGAATTAGAGTGTCGAAGCGGTCTCCGCAATAGATGACGAAATGTTCTATTCCAGCGAACAAAATTACAGTTGACTGAGCAAACTGGACGAGCTTGCCAACGACAGTACCCTTTTCCAAAAAAAAAAAAAAAA]

[+] EMBL CNS0998S             [                                GCGAAAACT   A  TCGTAGTGC ACGAAATCACACGATCCGGGCTGGAACGATCCGCCCCCGATACCGACGAGCCACAAACCGAGGGCTGGCGGTGCCAAAGCCGACAAGAAGCAGGAGGAGAATGCCGCCCCCGCCACCGAGGACAGCTTGCCGGAGCGGGAGGAGATGATCGGCCAGATACGGACCGTGTTCGATGGGTACGTGCAGCAGCTGGAGGAGTCACGCCGGGCGAATGTGCAAAAGCGTATCGATCTGCTGTACGACCAGTGGGCGAAGGGCACGCTGCCGGAACAGCTGGAAGCCCTGATCTACCGCCTGTCCGCTGCCCTGCTCGATGAGGACGACGTGCGTGCGAACGTGCTGCACCGCACGATCGTGTGTGATCACGCCGGCAA GTGCGCCCAGTGGGC CCGGTGCTGCGTCA CTGATCTTTGTCCTGCAGCTGCGCAACGAGCAGACGAAACCCGTCGTCGCCGACCAGATCGTGCAGCCGCTGTAGCGGGAAAGAGACGACGCAGACTGATAACGGGCAGGGATGAATGGCCCCCAGCTCAAGCCGGTGAGATCAGGAAGTATGTTTAATTGTTTCACGTATAGGATAGGAAAAGTACATTATGATGCAGAGCATGATATAGGCATATAGTATGCAATTTTGGGGGGGAAAGCCCACAGGCAAGGAAGAGAAATACACTGGCAGACAAACAATAATTACCCAGCCGTTAGTGCGAAATGCGAAGAGTGAAAGAATTAGAGTGTCGAAGCGGTCTCCGCAATAGATGACGAAATGTTCTATTCCAGCGAACAAAATTACAGTTGACTGAGCAAACTGGACGAGCTTGCCAACGACAGTACCCTTTTCCAAAAAAAAAAAAAAAA]
[+] EMBL AL932616             [cgagcgaacaaacatgacattacatgaaagtgGCGAAAACTTAAATTTCGTAGTGCAACGAAATCACACGATCCGGGCTGGAACGATCCGCCCCCGATACCGACGAGCCACAAACCGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CNS0998T             [                                                                                                ATACCGACGAGCCACAAACCGAGGGCT GCGGTGCCAAAGCCGACAAGAAGCAGGAGGAAAATGCCGCCCCCGCCACCGAGAACAGCTTGCCGGAGCGGGAGGAGATGATCGGCCAGATACGGACCGTGTTCGATGGGTACGTGCAGCAGCTGGAGAAGTCACGCCGGGCGAATGTGCAAAAGCGTATCGTTCTGCTGTACGACCAGTGGGCGAAGGGCACGCTGCCGGAACAGCTGGAAGCCCTGTTCTACCGCCTGTCCGCTGCCCTGCTCGATGAGGACAACGTGCGTGCGAACGTGCTGCACCGCACGATCGTGTGTGATCACGCCGGCAAGGTG GCCCAGTGGGCGCCGGTGCTGCGTCAGCTGATCTTTGTCCTGCAG TGCGCAACGAGCAGACGAAACCCGTCGTCGCCGACCAGATCGTGCAGCCGCTGTAGCGGGAAAGAGACGACGCAGACTGATTACGGGCAGGGATGAATGGCCCCCAGCTCAAGCCGGTGAGATCAGGAAGTATGTTTAATTTTTTCACGTATAGGATAGGAAAAGTACATTATGATGCAGAGCATGATATAGGCATATAGTATGCAATTTT GGGGGGAAAGCCCACAGGCAAGGAAGAGAAATAAACTGGCAGACAAACAATAATTACCCAGCCGTTAGTGCGAAATGCGAAGAGTGAAAGAATTAGAGTGTCGAAGCGGTCTCCGCAATAGATGACGAAATGTTCTATTCCAGCGAACAAAATTACAGTTGACTGAGCAAACTGGACGAGCTT                                      ]


>consensus_7617#0 CGAGCGAACAAACATGACATTACATGAAAGTGGCGAAAACTATCGTAGTGCACGAAATCA CACGATCCGGGCTGGAACGATCCGCCCCCGATACCGACGAGCCACAAACCGAGGGCTGGC GGTGCCAAAGCCGACAAGAAGCAGGAGGAGAATGCCGCCCCCGCCACCGAGGACAGCTTG CCGGAGCGGGAGGAGATGATCGGCCAGATACGGACCGTGTTCGATGGGTACGTGCAGCAG CTGGAGGAGTCACGCCGGGCGAATGTGCAAAAGCGTATCGATCTGCTGTACGACCAGTGG GCGAAGGGCACGCTGCCGGAACAGCTGGAAGCCCTGATCTACCGCCTGTCCGCTGCCCTG CTCGATGAGGACGACGTGCGTGCGAACGTGCTGCACCGCACGATCGTGTGTGATCACGCC GGCAAGTGCGCCCAGTGGGCCCGGTGCTGCGTCACTGATCTTTGTCCTGCAGCTGCGCAA CGAGCAGACGAAACCCGTCGTCGCCGACCAGATCGTGCAGCCGCTGTAGCGGGAAAGAGA CGACGCAGACTGATAACGGGCAGGGATGAATGGCCCCCAGCTCAAGCCGGTGAGATCAGG AAGTATGTTTAATTGTTTCACGTATAGGATAGGAAAAGTACATTATGATGCAGAGCATGA TATAGGCATATAGTATGCAATTTTGGGGGGGAAAGCCCACAGGCAAGGAAGAGAAATACA CTGGCAGACAAACAATAATTACCCAGCCGTTAGTGCGAAATGCGAAGAGTGAAAGAATTA GAGTGTCGAAGCGGTCTCCGCAATAGATGACGAAATGTTCTATTCCAGCGAACAAAATTA CAGTTGACTGAGCAAACTGGACGAGCTTGCCAACGACAGTACCCTTTTCCAAAAAAAAAA AAAAAA



consensusID : consensus_7617#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 723
fasta sequence
                              [CCGATCCGAGCGAACCAAAAACCATGACCATTAGCAATGAGTGGCGAAAACTATCGTAGTGCAACGAAATCACACGATCCGGGCTGGAACGATCCGCCCCCGATACCGACGAGCCACAAACCGAGGGCTGGCGGTGCCAAAGCCGACAAGAAGCAGGAGGAGAATGCCGCCCCCGCCACCGAGGACAGCTTGCCGGAGCGGGAGGAGATGATCGGCCAGATACGGACCGTGTTCGATGGGTACGTGCAGCAGCTGGAGGAGTCACGCCGGGCGAATGTGCAAAAGCGTATCGATCTGCTGTACGACCAGTGGGCGAAGGGCACGCTGCCGGAACAGCTGGAAGCCCTGATCTACCGCCTGTCCGCTGCCCTGCTCGATGAGGACGACGTGCGTGCGAACGTGCTGCACCGCACGATCGTGTGTGATCACGCCGGCAAGTGCGCCCAGTGGGCGCCGGTGCTGCGTCAGCTGATCTTTGTCCTGCAGCTGCGCAACGAGCAGACGAAACCCGTCGTCGCCGACCAGATCGTGCAGCCGCTGTAGCGGGAAAGGCAGCCGTGAGAGAGACGACGCAGACTGATAACGGGCAGGGATGAATGGCCCCCAGCTCAAGCCGGTGAGATCAGGAAGTATGTTTAATTGTTTCACGTATAGGATAGGAAAAGTACATTATGATGCAGAGCATGATATAGGCATATAGTATGCAATTTTGGGGGGAAAGCC]

[+] EMBL BM615605             [CCGATCCGAGCGAACCAAAAACCATGACCATTAGCAATGAGTGGCGAAAACTATCGTAGTGCAACGAAATCACACGATCCGGGCTGGAACGATCCGCCCCCGATACCGACGAGCCACAAACCGAGGGCTGGCGGTGCCAAAGCCGACAAGAAGCAGGAGGAGAATGCCGCCCCCGCCACCGAGGACAGCTTGCCGGAGCGGGAGGAGATGATCGGCCAGATACGGACCGTGTTCGATGGGTACGTGCAGCAGCTGGAGGAGTCACGCCGGGCGAATGTGCAAAAGCGTATCGATCTGCTGTACGACCAGTGGGCGAAGGGCACGCTGCCGGAACAGCTGGAAGCCCTGATCTACCGCCTGTCCGCTGCCCTGCTCGATGAGGACGACGTGCGTGCGAACGTGCTGCACCGCACGATCGTGTGTGATCACGCCGGCAAGTGCGCCCAGTGGGCGCCGGTGCTGCGTCAGCTGATCTTTGTCCTGCAGCTGCGCAACGAGCAGACGAAACCCGTCGTCGCCGACCAGATCGTGCAGCCGCTGTAGCGGGAAAGGCAGCCGTGAGAGAGACGACGCAGACTGATAACGGGCAGGGATGAATGGCCCCCAGCTCAAGCCGGTGAGATCAGGAAGTATGTTTAATTGTTTCACGTATAGGATAGGAAAAGTACATTATGATGCAGAGCATGA                                    ]
[+] EMBL BX615741             [                               TAGCAATGAGTGGCGAAAACTATCGTAGTGCAACGAAATCACACGATCCGGGCTGGAACGATCCGCCCCCGATACCGACGAGCCACAAACCGAGGGCTGGCGGTGCCAAAGCCGACAAGAAGCAGGAGGAGAATGCCGCCCCCGCCACCGAGGACAGCTTGCCGGAGCGGGAGGAGATGATCGGCCAGATACGGACCGTGTTCGATGGGTACGTGCAGCAGCTGGAGGAGTCACGCCGGGCGAATGTGCAAAAGCGTATCGATCTGCTGTACGACCAGTGGGCGAAGGGCACGCTGCCGGAACAGCTGGAAGCCCTGATCTACCGCCTGTCCGCTGCCCTGCTCGATGAGGACGACGTGCGTGCGAACGTGCTGCACCGCACGATCGTGTGTGATCACGCCGGCAAGTGCGCCCAGTGGGC                                                                                                                                                                                                                                                                               ]
[+] EMBL BX618370             [                                                     TCGTAGTGCAACGAAATCACACGATCCGGGCTGGAACGATCCGCCCCCGATACCGACGAGCCACAAACCGAGGGCTGGCGGTGCCAAAGCCGACAAGAAGCAGGAGGAGAATGCCGCCCCCGCCACCGAGGACAGCTTGCCGTAGCGGGAGGAGATGATCGGCCAGATACGGACCGTGTTCGATGGGTACGTGCAGCAGCTGGAGGAGTCACGCCGGGCGAATGTGCAAAAGCGTATCGATCTGCTGTACGACCAGTGGGCGAAGGGCACGCTGCCGGAATAGCTGGAAGCCCTGATCTACCGCCTGTCCGCTGCCCTGCTCGATGAGGACGACGTGCGTGCGAACGTGCTGCACCGCACGATCGTGTGTGATCACGCCGGCAAGTGCGCCCAGTGGGCGCCGGTGCTGCGTCAGCTGATCTTTGTCCTGCAGCTGCGCAACGAGCAGACGAAACCCGTCGTCGCCGACCAGATCGTGCAGCCGCTGTAGCGGGAAAGGCAGCCGTGAGAGAGACGACGCAGACTGATAACGGGCAGGGATGAATGGCCCCCAGCTCAAGCCGGTGAGATCAGGAAGTATGTTTAATTGTTTCACGTATAGGATAGGAAAAGTACATTATGATGCAGAGCATGATATAGGCATATAGTATGCAATTTTGGGGGGAAAGCC]
[+] EMBL BX614970             [                                                                                                                                                                                                           GGAGATGATCGGCCAGATACGGACCGTGTTCGATGGGTACGTGCAGCAGCTGGAGGAGTCACGCCGGGCGAATGTGCAAAAGCGTATCGATCTGCTGTACGAACAGTGGGCGAAGGGCACGCTGCGGGAACAGCTGGAAGCTTTGATCTACTGCTTGTCGGCTGCTATGCTCGATGAGGACGAAGTGCGTGCGAACGTGCTGCACTGCACGATCGTGTGTGATCACGCTGGCAAGTGCGCATAGTGGGCGCTGGgg                                                                                                                                                                                                                                                                        ]


>consensus_7617#1 CCGATCCGAGCGAACCAAAAACCATGACCATTAGCAATGAGTGGCGAAAACTATCGTAGT GCAACGAAATCACACGATCCGGGCTGGAACGATCCGCCCCCGATACCGACGAGCCACAAA CCGAGGGCTGGCGGTGCCAAAGCCGACAAGAAGCAGGAGGAGAATGCCGCCCCCGCCACC GAGGACAGCTTGCCGGAGCGGGAGGAGATGATCGGCCAGATACGGACCGTGTTCGATGGG TACGTGCAGCAGCTGGAGGAGTCACGCCGGGCGAATGTGCAAAAGCGTATCGATCTGCTG TACGACCAGTGGGCGAAGGGCACGCTGCCGGAACAGCTGGAAGCCCTGATCTACCGCCTG TCCGCTGCCCTGCTCGATGAGGACGACGTGCGTGCGAACGTGCTGCACCGCACGATCGTG TGTGATCACGCCGGCAAGTGCGCCCAGTGGGCGCCGGTGCTGCGTCAGCTGATCTTTGTC CTGCAGCTGCGCAACGAGCAGACGAAACCCGTCGTCGCCGACCAGATCGTGCAGCCGCTG TAGCGGGAAAGGCAGCCGTGAGAGAGACGACGCAGACTGATAACGGGCAGGGATGAATGG CCCCCAGCTCAAGCCGGTGAGATCAGGAAGTATGTTTAATTGTTTCACGTATAGGATAGG AAAAGTACATTATGATGCAGAGCATGATATAGGCATATAGTATGCAATTTTGGGGGGAAA GCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7617#0      ----------CGAGCGAACAAACATGAC-ATTACATGAAAGTGGCGAAAACTATCGTAGT 49
consensus_7617#1      CCGATCCGAGCGAACCAAAAACCATGACCATTAGCAATGAGTGGCGAAAACTATCGTAGT 60
                                *** * ** ** ****** ****      *********************

consensus_7617#0      GCA-CGAAATCACACGATCCGGGCTGGAACGATCCGCCCCCGATACCGACGAGCCACAAA 108
consensus_7617#1      GCAACGAAATCACACGATCCGGGCTGGAACGATCCGCCCCCGATACCGACGAGCCACAAA 120
                      *** ********************************************************

consensus_7617#0      CCGAGGGCTGGCGGTGCCAAAGCCGACAAGAAGCAGGAGGAGAATGCCGCCCCCGCCACC 168
consensus_7617#1      CCGAGGGCTGGCGGTGCCAAAGCCGACAAGAAGCAGGAGGAGAATGCCGCCCCCGCCACC 180
                      ************************************************************

consensus_7617#0      GAGGACAGCTTGCCGGAGCGGGAGGAGATGATCGGCCAGATACGGACCGTGTTCGATGGG 228
consensus_7617#1      GAGGACAGCTTGCCGGAGCGGGAGGAGATGATCGGCCAGATACGGACCGTGTTCGATGGG 240
                      ************************************************************

consensus_7617#0      TACGTGCAGCAGCTGGAGGAGTCACGCCGGGCGAATGTGCAAAAGCGTATCGATCTGCTG 288
consensus_7617#1      TACGTGCAGCAGCTGGAGGAGTCACGCCGGGCGAATGTGCAAAAGCGTATCGATCTGCTG 300
                      ************************************************************

consensus_7617#0      TACGACCAGTGGGCGAAGGGCACGCTGCCGGAACAGCTGGAAGCCCTGATCTACCGCCTG 348
consensus_7617#1      TACGACCAGTGGGCGAAGGGCACGCTGCCGGAACAGCTGGAAGCCCTGATCTACCGCCTG 360
                      ************************************************************

consensus_7617#0      TCCGCTGCCCTGCTCGATGAGGACGACGTGCGTGCGAACGTGCTGCACCGCACGATCGTG 408
consensus_7617#1      TCCGCTGCCCTGCTCGATGAGGACGACGTGCGTGCGAACGTGCTGCACCGCACGATCGTG 420
                      ************************************************************

consensus_7617#0      TGTGATCACGCCGGCAAGTGCGCCCAGTGGGC-CCGGTGCTGCGTCA-CTGATCTTTGTC 466
consensus_7617#1      TGTGATCACGCCGGCAAGTGCGCCCAGTGGGCGCCGGTGCTGCGTCAGCTGATCTTTGTC 480
                      ******************************** ************** ************

consensus_7617#0      CTGCAGCTGCGCAACGAGCAGACGAAACCCGTCGTCGCCGACCAGATCGTGCAGCCGCTG 526
consensus_7617#1      CTGCAGCTGCGCAACGAGCAGACGAAACCCGTCGTCGCCGACCAGATCGTGCAGCCGCTG 540
                      ************************************************************

consensus_7617#0      TAGCGGGAAAG-------------AGACGACGCAGACTGATAACGGGCAGGGATGAATGG 573
consensus_7617#1      TAGCGGGAAAGGCAGCCGTGAGAGAGACGACGCAGACTGATAACGGGCAGGGATGAATGG 600
                      ***********             ************************************

consensus_7617#0      CCCCCAGCTCAAGCCGGTGAGATCAGGAAGTATGTTTAATTGTTTCACGTATAGGATAGG 633
consensus_7617#1      CCCCCAGCTCAAGCCGGTGAGATCAGGAAGTATGTTTAATTGTTTCACGTATAGGATAGG 660
                      ************************************************************

consensus_7617#0      AAAAGTACATTATGATGCAGAGCATGATATAGGCATATAGTATGCAATTTTGGGGGGGAA 693
consensus_7617#1      AAAAGTACATTATGATGCAGAGCATGATATAGGCATATAGTATGCAATTTTGGGGGG-AA 719
                      ********************************************************* **

consensus_7617#0      AGCCCACAGGCAAGGAAGAGAAATACACTGGCAGACAAACAATAATTACCCAGCCGTTAG 753
consensus_7617#1      AGCC-------------------------------------------------------- 723
                      ****                                                        

consensus_7617#0      TGCGAAATGCGAAGAGTGAAAGAATTAGAGTGTCGAAGCGGTCTCCGCAATAGATGACGA 813
consensus_7617#1      ------------------------------------------------------------
                                                                                  

consensus_7617#0      AATGTTCTATTCCAGCGAACAAAATTACAGTTGACTGAGCAAACTGGACGAGCTTGCCAA 873
consensus_7617#1      ------------------------------------------------------------
                                                                                  

consensus_7617#0      CGACAGTACCCTTTTCCAAAAAAAAAAAAAAAA 906
consensus_7617#1      ---------------------------------
                                                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)