These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7617#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 906 fasta sequence [CGAGCGAACAAACATGACATTACATGAAAGTGGCGAAAACT---A--TCGTAGTGC-ACGAAATCACACGATCCGGGCTGGAACGATCCGCCCCCGATACCGACGAGCCACAAACCGAGGGCTGGCGGTGCCAAAGCCGACAAGAAGCAGGAGGAGAATGCCGCCCCCGCCACCGAGGACAGCTTGCCGGAGCGGGAGGAGATGATCGGCCAGATACGGACCGTGTTCGATGGGTACGTGCAGCAGCTGGAGGAGTCACGCCGGGCGAATGTGCAAAAGCGTATCGATCTGCTGTACGACCAGTGGGCGAAGGGCACGCTGCCGGAACAGCTGGAAGCCCTGATCTACCGCCTGTCCGCTGCCCTGCTCGATGAGGACGACGTGCGTGCGAACGTGCTGCACCGCACGATCGTGTGTGATCACGCCGGCAA-GTGCGCCCAGTGGGC-CCGGTGCTGCGTCA-CTGATCTTTGTCCTGCAGCTGCGCAACGAGCAGACGAAACCCGTCGTCGCCGACCAGATCGTGCAGCCGCTGTAGCGGGAAAGAGACGACGCAGACTGATAACGGGCAGGGATGAATGGCCCCCAGCTCAAGCCGGTGAGATCAGGAAGTATGTTTAATTGTTTCACGTATAGGATAGGAAAAGTACATTATGATGCAGAGCATGATATAGGCATATAGTATGCAATTTTGGGGGGGAAAGCCCACAGGCAAGGAAGAGAAATACACTGGCAGACAAACAATAATTACCCAGCCGTTAGTGCGAAATGCGAAGAGTGAAAGAATTAGAGTGTCGAAGCGGTCTCCGCAATAGATGACGAAATGTTCTATTCCAGCGAACAAAATTACAGTTGACTGAGCAAACTGGACGAGCTTGCCAACGACAGTACCCTTTTCCAAAAAAAAAAAAAAAA] [+] EMBL CNS0998S [ GCGAAAACT A TCGTAGTGC ACGAAATCACACGATCCGGGCTGGAACGATCCGCCCCCGATACCGACGAGCCACAAACCGAGGGCTGGCGGTGCCAAAGCCGACAAGAAGCAGGAGGAGAATGCCGCCCCCGCCACCGAGGACAGCTTGCCGGAGCGGGAGGAGATGATCGGCCAGATACGGACCGTGTTCGATGGGTACGTGCAGCAGCTGGAGGAGTCACGCCGGGCGAATGTGCAAAAGCGTATCGATCTGCTGTACGACCAGTGGGCGAAGGGCACGCTGCCGGAACAGCTGGAAGCCCTGATCTACCGCCTGTCCGCTGCCCTGCTCGATGAGGACGACGTGCGTGCGAACGTGCTGCACCGCACGATCGTGTGTGATCACGCCGGCAA GTGCGCCCAGTGGGC CCGGTGCTGCGTCA CTGATCTTTGTCCTGCAGCTGCGCAACGAGCAGACGAAACCCGTCGTCGCCGACCAGATCGTGCAGCCGCTGTAGCGGGAAAGAGACGACGCAGACTGATAACGGGCAGGGATGAATGGCCCCCAGCTCAAGCCGGTGAGATCAGGAAGTATGTTTAATTGTTTCACGTATAGGATAGGAAAAGTACATTATGATGCAGAGCATGATATAGGCATATAGTATGCAATTTTGGGGGGGAAAGCCCACAGGCAAGGAAGAGAAATACACTGGCAGACAAACAATAATTACCCAGCCGTTAGTGCGAAATGCGAAGAGTGAAAGAATTAGAGTGTCGAAGCGGTCTCCGCAATAGATGACGAAATGTTCTATTCCAGCGAACAAAATTACAGTTGACTGAGCAAACTGGACGAGCTTGCCAACGACAGTACCCTTTTCCAAAAAAAAAAAAAAAA] [+] EMBL AL932616 [cgagcgaacaaacatgacattacatgaaagtgGCGAAAACTTAAATTTCGTAGTGCAACGAAATCACACGATCCGGGCTGGAACGATCCGCCCCCGATACCGACGAGCCACAAACCGAG ] [-] EMBL CNS0998T [ ATACCGACGAGCCACAAACCGAGGGCT GCGGTGCCAAAGCCGACAAGAAGCAGGAGGAAAATGCCGCCCCCGCCACCGAGAACAGCTTGCCGGAGCGGGAGGAGATGATCGGCCAGATACGGACCGTGTTCGATGGGTACGTGCAGCAGCTGGAGAAGTCACGCCGGGCGAATGTGCAAAAGCGTATCGTTCTGCTGTACGACCAGTGGGCGAAGGGCACGCTGCCGGAACAGCTGGAAGCCCTGTTCTACCGCCTGTCCGCTGCCCTGCTCGATGAGGACAACGTGCGTGCGAACGTGCTGCACCGCACGATCGTGTGTGATCACGCCGGCAAGGTG GCCCAGTGGGCGCCGGTGCTGCGTCAGCTGATCTTTGTCCTGCAG TGCGCAACGAGCAGACGAAACCCGTCGTCGCCGACCAGATCGTGCAGCCGCTGTAGCGGGAAAGAGACGACGCAGACTGATTACGGGCAGGGATGAATGGCCCCCAGCTCAAGCCGGTGAGATCAGGAAGTATGTTTAATTTTTTCACGTATAGGATAGGAAAAGTACATTATGATGCAGAGCATGATATAGGCATATAGTATGCAATTTT GGGGGGAAAGCCCACAGGCAAGGAAGAGAAATAAACTGGCAGACAAACAATAATTACCCAGCCGTTAGTGCGAAATGCGAAGAGTGAAAGAATTAGAGTGTCGAAGCGGTCTCCGCAATAGATGACGAAATGTTCTATTCCAGCGAACAAAATTACAGTTGACTGAGCAAACTGGACGAGCTT ] consensusID : consensus_7617#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 723 fasta sequence [CCGATCCGAGCGAACCAAAAACCATGACCATTAGCAATGAGTGGCGAAAACTATCGTAGTGCAACGAAATCACACGATCCGGGCTGGAACGATCCGCCCCCGATACCGACGAGCCACAAACCGAGGGCTGGCGGTGCCAAAGCCGACAAGAAGCAGGAGGAGAATGCCGCCCCCGCCACCGAGGACAGCTTGCCGGAGCGGGAGGAGATGATCGGCCAGATACGGACCGTGTTCGATGGGTACGTGCAGCAGCTGGAGGAGTCACGCCGGGCGAATGTGCAAAAGCGTATCGATCTGCTGTACGACCAGTGGGCGAAGGGCACGCTGCCGGAACAGCTGGAAGCCCTGATCTACCGCCTGTCCGCTGCCCTGCTCGATGAGGACGACGTGCGTGCGAACGTGCTGCACCGCACGATCGTGTGTGATCACGCCGGCAAGTGCGCCCAGTGGGCGCCGGTGCTGCGTCAGCTGATCTTTGTCCTGCAGCTGCGCAACGAGCAGACGAAACCCGTCGTCGCCGACCAGATCGTGCAGCCGCTGTAGCGGGAAAGGCAGCCGTGAGAGAGACGACGCAGACTGATAACGGGCAGGGATGAATGGCCCCCAGCTCAAGCCGGTGAGATCAGGAAGTATGTTTAATTGTTTCACGTATAGGATAGGAAAAGTACATTATGATGCAGAGCATGATATAGGCATATAGTATGCAATTTTGGGGGGAAAGCC] [+] EMBL BM615605 [CCGATCCGAGCGAACCAAAAACCATGACCATTAGCAATGAGTGGCGAAAACTATCGTAGTGCAACGAAATCACACGATCCGGGCTGGAACGATCCGCCCCCGATACCGACGAGCCACAAACCGAGGGCTGGCGGTGCCAAAGCCGACAAGAAGCAGGAGGAGAATGCCGCCCCCGCCACCGAGGACAGCTTGCCGGAGCGGGAGGAGATGATCGGCCAGATACGGACCGTGTTCGATGGGTACGTGCAGCAGCTGGAGGAGTCACGCCGGGCGAATGTGCAAAAGCGTATCGATCTGCTGTACGACCAGTGGGCGAAGGGCACGCTGCCGGAACAGCTGGAAGCCCTGATCTACCGCCTGTCCGCTGCCCTGCTCGATGAGGACGACGTGCGTGCGAACGTGCTGCACCGCACGATCGTGTGTGATCACGCCGGCAAGTGCGCCCAGTGGGCGCCGGTGCTGCGTCAGCTGATCTTTGTCCTGCAGCTGCGCAACGAGCAGACGAAACCCGTCGTCGCCGACCAGATCGTGCAGCCGCTGTAGCGGGAAAGGCAGCCGTGAGAGAGACGACGCAGACTGATAACGGGCAGGGATGAATGGCCCCCAGCTCAAGCCGGTGAGATCAGGAAGTATGTTTAATTGTTTCACGTATAGGATAGGAAAAGTACATTATGATGCAGAGCATGA ] [+] EMBL BX615741 [ TAGCAATGAGTGGCGAAAACTATCGTAGTGCAACGAAATCACACGATCCGGGCTGGAACGATCCGCCCCCGATACCGACGAGCCACAAACCGAGGGCTGGCGGTGCCAAAGCCGACAAGAAGCAGGAGGAGAATGCCGCCCCCGCCACCGAGGACAGCTTGCCGGAGCGGGAGGAGATGATCGGCCAGATACGGACCGTGTTCGATGGGTACGTGCAGCAGCTGGAGGAGTCACGCCGGGCGAATGTGCAAAAGCGTATCGATCTGCTGTACGACCAGTGGGCGAAGGGCACGCTGCCGGAACAGCTGGAAGCCCTGATCTACCGCCTGTCCGCTGCCCTGCTCGATGAGGACGACGTGCGTGCGAACGTGCTGCACCGCACGATCGTGTGTGATCACGCCGGCAAGTGCGCCCAGTGGGC ] [+] EMBL BX618370 [ TCGTAGTGCAACGAAATCACACGATCCGGGCTGGAACGATCCGCCCCCGATACCGACGAGCCACAAACCGAGGGCTGGCGGTGCCAAAGCCGACAAGAAGCAGGAGGAGAATGCCGCCCCCGCCACCGAGGACAGCTTGCCGTAGCGGGAGGAGATGATCGGCCAGATACGGACCGTGTTCGATGGGTACGTGCAGCAGCTGGAGGAGTCACGCCGGGCGAATGTGCAAAAGCGTATCGATCTGCTGTACGACCAGTGGGCGAAGGGCACGCTGCCGGAATAGCTGGAAGCCCTGATCTACCGCCTGTCCGCTGCCCTGCTCGATGAGGACGACGTGCGTGCGAACGTGCTGCACCGCACGATCGTGTGTGATCACGCCGGCAAGTGCGCCCAGTGGGCGCCGGTGCTGCGTCAGCTGATCTTTGTCCTGCAGCTGCGCAACGAGCAGACGAAACCCGTCGTCGCCGACCAGATCGTGCAGCCGCTGTAGCGGGAAAGGCAGCCGTGAGAGAGACGACGCAGACTGATAACGGGCAGGGATGAATGGCCCCCAGCTCAAGCCGGTGAGATCAGGAAGTATGTTTAATTGTTTCACGTATAGGATAGGAAAAGTACATTATGATGCAGAGCATGATATAGGCATATAGTATGCAATTTTGGGGGGAAAGCC] [+] EMBL BX614970 [ GGAGATGATCGGCCAGATACGGACCGTGTTCGATGGGTACGTGCAGCAGCTGGAGGAGTCACGCCGGGCGAATGTGCAAAAGCGTATCGATCTGCTGTACGAACAGTGGGCGAAGGGCACGCTGCGGGAACAGCTGGAAGCTTTGATCTACTGCTTGTCGGCTGCTATGCTCGATGAGGACGAAGTGCGTGCGAACGTGCTGCACTGCACGATCGTGTGTGATCACGCTGGCAAGTGCGCATAGTGGGCGCTGGgg ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7617#0 ----------CGAGCGAACAAACATGAC-ATTACATGAAAGTGGCGAAAACTATCGTAGT 49 consensus_7617#1 CCGATCCGAGCGAACCAAAAACCATGACCATTAGCAATGAGTGGCGAAAACTATCGTAGT 60 *** * ** ** ****** **** ********************* consensus_7617#0 GCA-CGAAATCACACGATCCGGGCTGGAACGATCCGCCCCCGATACCGACGAGCCACAAA 108 consensus_7617#1 GCAACGAAATCACACGATCCGGGCTGGAACGATCCGCCCCCGATACCGACGAGCCACAAA 120 *** ******************************************************** consensus_7617#0 CCGAGGGCTGGCGGTGCCAAAGCCGACAAGAAGCAGGAGGAGAATGCCGCCCCCGCCACC 168 consensus_7617#1 CCGAGGGCTGGCGGTGCCAAAGCCGACAAGAAGCAGGAGGAGAATGCCGCCCCCGCCACC 180 ************************************************************ consensus_7617#0 GAGGACAGCTTGCCGGAGCGGGAGGAGATGATCGGCCAGATACGGACCGTGTTCGATGGG 228 consensus_7617#1 GAGGACAGCTTGCCGGAGCGGGAGGAGATGATCGGCCAGATACGGACCGTGTTCGATGGG 240 ************************************************************ consensus_7617#0 TACGTGCAGCAGCTGGAGGAGTCACGCCGGGCGAATGTGCAAAAGCGTATCGATCTGCTG 288 consensus_7617#1 TACGTGCAGCAGCTGGAGGAGTCACGCCGGGCGAATGTGCAAAAGCGTATCGATCTGCTG 300 ************************************************************ consensus_7617#0 TACGACCAGTGGGCGAAGGGCACGCTGCCGGAACAGCTGGAAGCCCTGATCTACCGCCTG 348 consensus_7617#1 TACGACCAGTGGGCGAAGGGCACGCTGCCGGAACAGCTGGAAGCCCTGATCTACCGCCTG 360 ************************************************************ consensus_7617#0 TCCGCTGCCCTGCTCGATGAGGACGACGTGCGTGCGAACGTGCTGCACCGCACGATCGTG 408 consensus_7617#1 TCCGCTGCCCTGCTCGATGAGGACGACGTGCGTGCGAACGTGCTGCACCGCACGATCGTG 420 ************************************************************ consensus_7617#0 TGTGATCACGCCGGCAAGTGCGCCCAGTGGGC-CCGGTGCTGCGTCA-CTGATCTTTGTC 466 consensus_7617#1 TGTGATCACGCCGGCAAGTGCGCCCAGTGGGCGCCGGTGCTGCGTCAGCTGATCTTTGTC 480 ******************************** ************** ************ consensus_7617#0 CTGCAGCTGCGCAACGAGCAGACGAAACCCGTCGTCGCCGACCAGATCGTGCAGCCGCTG 526 consensus_7617#1 CTGCAGCTGCGCAACGAGCAGACGAAACCCGTCGTCGCCGACCAGATCGTGCAGCCGCTG 540 ************************************************************ consensus_7617#0 TAGCGGGAAAG-------------AGACGACGCAGACTGATAACGGGCAGGGATGAATGG 573 consensus_7617#1 TAGCGGGAAAGGCAGCCGTGAGAGAGACGACGCAGACTGATAACGGGCAGGGATGAATGG 600 *********** ************************************ consensus_7617#0 CCCCCAGCTCAAGCCGGTGAGATCAGGAAGTATGTTTAATTGTTTCACGTATAGGATAGG 633 consensus_7617#1 CCCCCAGCTCAAGCCGGTGAGATCAGGAAGTATGTTTAATTGTTTCACGTATAGGATAGG 660 ************************************************************ consensus_7617#0 AAAAGTACATTATGATGCAGAGCATGATATAGGCATATAGTATGCAATTTTGGGGGGGAA 693 consensus_7617#1 AAAAGTACATTATGATGCAGAGCATGATATAGGCATATAGTATGCAATTTTGGGGGG-AA 719 ********************************************************* ** consensus_7617#0 AGCCCACAGGCAAGGAAGAGAAATACACTGGCAGACAAACAATAATTACCCAGCCGTTAG 753 consensus_7617#1 AGCC-------------------------------------------------------- 723 **** consensus_7617#0 TGCGAAATGCGAAGAGTGAAAGAATTAGAGTGTCGAAGCGGTCTCCGCAATAGATGACGA 813 consensus_7617#1 ------------------------------------------------------------ consensus_7617#0 AATGTTCTATTCCAGCGAACAAAATTACAGTTGACTGAGCAAACTGGACGAGCTTGCCAA 873 consensus_7617#1 ------------------------------------------------------------ consensus_7617#0 CGACAGTACCCTTTTCCAAAAAAAAAAAAAAAA 906 consensus_7617#1 --------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||