These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7618#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 667 fasta sequence [CCGCCATTATTCAGTGAGTGACAGTGCGCGAGTGCGTACGCGCGCGGCTTCATCTGTCCGCCACATATCGACAAAAACCGACAACAGAACGAGTGTTATAGAGTAACGTGTTGCATGTGTAAAGCCTGAAGTGTGACACTCGTTTCCAGCAATTCCACCCATCTCTCGACAAAAGACCACCTGTTTCTTGAGTAACAATAACAGTATGGCCATGGGGGGTAGTATACCCCTGCGCACGGCGACACTCTGTCTGGGCACACTGGTTGCTGTGGCCGCACTGCTCCAGTCACCGGTCCCGGTCACCGCCAGCCAGGTCAAGGGCGCCAGCCCGATCGATGCGCTGCGCAACCGGTACCTGCAGCAGGAGCGCCGGGCCTGGACGATCGTCAACCAGATCGACGCGGTCGACAACCAGCTCGAGCAGGACGCGACCCAGCAGCGTGCGACCGTGATGCGCGAGCTGGTCGACATCTATCTCCGGTTCGCCGAGACGGAGCTGGACCCGGAGGACCGGGGCGAGTACCAGCTGCTCGCCCGGCTCGCCGAGTGGCATCTGCTCGAGCAGAACCTGCTGACGATCAACAAGCTGTTCGAGGTGGTGTACAACTTTCTGCGCAACAATGCGCCCCGTTTCGCGGAGCAGGCCGAATTTGCACCGGAGGAGATT] [+] EMBL BM591559 [CCGCCATTATTCAGTGAGTGACAGTGCGCGAGTGCGTACGCGCGCGGCTTCATCTGTCCGCCACATATCGACAAAAACCGACAACAGAACGAGTGTTATAGAGTAACGTGTTGCATGTGTAAAGCCTGAAGTGTGACACTCGTTTCCAGCAATTCCACCCATCTCTCGACAAAAGACCACCTGTTTCTTGAGTAACAATAACAGTATGGCCATGGGGGGTAGTATACCCCTGCGCACGGCGACACTCTGTCTGGGCACACTGGTTGCTGTGGCCGCACTGCTCCAGTCACCGGTCCCGGTCACCGCCAGCCAGGTCAAGGGCGCCAGCCCGATCGATGCGCTGCGCAACCGGTACCTGCAGCAGGAGCGCCGGGCCTGGACGATCGTCAACCAGATCGACGCGGTCGACAACCAGCTCGAGCAGGACGCGACCCAGCAGCGTGCGACCGTGATGCGCGAGCTGGTCGACATCTATCTCCGGTTCGCCGAGACGGAGCTGGACCCGGAGGACCGGGGCGAGTACCAGCTGCTCGCCCGGCTCGCCGAGTGGCATCTGCTCGAGCAGAACCTGCTGACGATCAACAAGCTGTTCGAGGTGGTGTACAACTTTCTGCGCAACAATGCGCCCCGTTTCGCGGAGCAGGCCGAATTTGCACCGGAGGAGATT] [+] EMBL BM634287 [ ccgATTATTCAGTGAGTGACAGTGCGCGAGTGCGTACGCGCGCGGCTTCATCTGTCCGCCACATATCGACAAAAACCGACAACAGAACGAGTGTTATAGAGTAACGTGTTGCATGTGTAAAGCCTGAAGTGTGACACTCGTTTCCAGCAATTCCACCCATCTCTCGACAAAAGACCACCTGTTTCTTGAGTAACAATAACAGTATGGCCATGGGGGGTAGTATACCCCTGCGCACGGCGACACTCTGTCTGGGCACACTGGTTGCTGTGGCCGCACTGCTCCAGTCACCGGTCCCGGTCACCGCCAGCCAGGTCAAGGGCGCCAGCCCGATCGATGCGCTGCGCAACCGGTACCTGCAGCAGGAGCGCCGGGCCTGGACGATCGTCAACCAGATCGACGCGGTCGACAACCAGCTCGAGCAGGACGCGACCCAGCAGCGTGCGACCGTGATGCGCGAGCTGGTCGACATCTATCTCCGGTTCGCCGAGACGGAGCTGGACCCGGAGGACCGGGGCGAGTACCAGCTGCTCGCCCGGCTCGCCGAGTGGCATCTGCTCGAGCAGAACCTGCTGACGATCAACAAGCTGTTCGAGGTGGTGTACAACTTTCTGCG ] [+] EMBL AGA285073 [ GAACGAGTGTTATACAGCAACGTGTTGCTTGTGTAAAGCCTGAAGTGTGACACTCGTTTCCAGCAATTCCACCCATCTCTCGACAAAAGACCACCTGTTTCTTGAGTAACAATAACAGTATGGCCATGGGGGGTAGTATACCCCTGCGCACGGCGACACTCTGTCTGGGCACACTGGTTGCTGTGGCCGCACTGCTCCAGTCACCGGTCCCGGTCACCGCCAGCCATGTCAAGGGCGCCAGCCCGATCGATGCGCTGCGCAACCGGTACCTGCAGCAGGAGCGCCGGGCCTGGACGATCGTCAACCAGATCGACGCGGTCGACAACCAGCTCGAGCAGGACGCGACCCAGCAGCGTGCGACCGTGATGCGCGAGCTGGTCGACATCTATCTCCGGTTCGCCGAGACGGAGCTGGACCCGGAGGACCGGGGCGAGTACCAGCTGCTCGCCCGGCTCGCCGAGTGGCATCTGCTCGAGCAGAACCTGCTGACGATCAACA ] consensusID : consensus_7618#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence [CCGCGCCATTATTCAGTGAGTGACAGTGCGCGAGTGCGTACGCGCGCGGCTTCATCTGTCCGCCACATATCGACAAAAACCGACAACAGAACGAGGTCGGCAGGGTGTTAGAAGTGTTTGTGTTTATTGTTATAGAGTAACGTGTTGCATGTGTAAAGCCTGAAGTGTGACACTCGTTTCCAGCAATTCCACCCATCTCTCGACAAAAGACCACCTGTTTCTTGAGTAACAATAACAGTATGGCCATGGGGGGTAGTATACCCCTGCGCACGGCGACACTCTGTCTGGGCACACTGGTTGCTGTGGCCGCACTGCTCCAGTCACCGGTCCCGGTCACCGCCAGCCAGGTCAAGGGCGCCAGCCCGATCGATGCGCTGCGCAACCGGTACCTGCAGCAGGAGCGCCGGGCCTGGACGATCGTCAACCAGATCGACGCGGTCGACAACCAGCTCGAGCAGGACGCGACCCAGCAGCGTGCGACCGTGATGCGCGAGCTGGTCGACATCTATCTCCGGTTCGCCGAGACGGAGCTGGACCCGGAGGACCGGGGGCGAGTACCAGCTGCTCGCCCGGCTCGCCGAGTGGCATCTGCTCGAGCAGAACCTGCTGACGATCAACAAGCTGTTCGAGGTGGTGTACAACTTTCTGC] [+] EMBL BM597433 [CCGCGCCATTATTCAGTGAGTGACAGTGCGCGAGTGCGTACGCGCGCGGCTTCATCTGTCCGCCACATATCGACAAAAACCGACAACAGAACGAGGTCGGCAGGGTGTTAGAAGTGTTTGTGTTTATTGTTATAGAGTAACGTGTTGCATGTGTAAAGCCTGAAGTGTGACACTCGTTTCCAGCAATTCCACCCATCTCTCGACAAAAGACCACCTGTTTCTTGAGTAACAATAACAGTATGGCCATGGGGGGTAGTATACCCCTGCGCACGGCGACACTCTGTCTGGGCACACTGGTTGCTGTGGCCGCACTGCTCCAGTCACCGGTCCCGGTCACCGCCAGCCAGGTCAAGGGCGCCAGCCCGATCGATGCGCTGCGCAACCGGTACCTGCAGCAGGAGCGCCGGGCCTGGACGATCGTCAACCAGATCGACGCGGTCGACAACCAGCTCGAGCAGGACGCGACCCAGCAGCGTGCGACCGTGATGCGCGAGCTGGTCGACATCTATCTCCGGTTCGCCGAGACGGAGCTGGACCCGGAGGACCGGGGGCGAGTACCAGCTGCTCGCCCGGCTCGCCGAGTGGCATCTGCTCGAGCAGAACCTGCTGACGATCAACAAGCTGTTCGAGGTGGTGTACAACTTTCTGC] consensusID : consensus_7618#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence [CCGGCGCGAGTGCGTACGCGCGCGGCTTCATCTGTCCGCCACATATCGACAAAAACCGACAACAGAACGAGGTCGGCAGGGTGTTAGAAGTGTTTGTGTTTATGTGTGTGTGTGTGTGTTGAAAATCCATTCCACCTGTTATAGAGTAACGTGTTGCATGTGTAAAGCCTGAAGTGTGACACTCGTTTCCAGCAATTCCACCCATCTCTCGACAAAAGACCACCTGTTTCTTGAGTAACAATAACAGTATGGCCATGGGGGGTAGTATACCCCTGCGCACGGCGACACTCTGTCTGGGCACACTGGTTGCTGTGGCCGCACTGCTCCAGTCACCGGTCCCGGTCACCGCCAGCCAGGTCAAGGGCGCCAGCCCGATCGATGCGCTGCGCAACCGGTACCTGCAGCAGGAGCGCCGGGCCTGGACGATCGTCAACCAGATCGACGCGGTCGACAACCAGCTCGAGCAGGACGCGACCCAGCAGCGTGCGACCGTGATGCGCGAGCTGGTCGACATCTATCTCCGGTTCGCCGAGACGGAGCTGGACCCGGAGGACCGGGGCGAGTACCAGCTGCTCGCCCGGCTCGCCGAGTGGCATCTGCTCGAGCAGAACCTGCTGACGATC] [+] EMBL BM633414 [CCGGCGCGAGTGCGTACGCGCGCGGCTTCATCTGTCCGCCACATATCGACAAAAACCGACAACAGAACGAGGTCGGCAGGGTGTTAGAAGTGTTTGTGTTTATGTGTGTGTGTGTGTGTTGAAAATCCATTCCACCTGTTATAGAGTAACGTGTTGCATGTGTAAAGCCTGAAGTGTGACACTCGTTTCCAGCAATTCCACCCATCTCTCGACAAAAGACCACCTGTTTCTTGAGTAACAATAACAGTATGGCCATGGGGGGTAGTATACCCCTGCGCACGGCGACACTCTGTCTGGGCACACTGGTTGCTGTGGCCGCACTGCTCCAGTCACCGGTCCCGGTCACCGCCAGCCAGGTCAAGGGCGCCAGCCCGATCGATGCGCTGCGCAACCGGTACCTGCAGCAGGAGCGCCGGGCCTGGACGATCGTCAACCAGATCGACGCGGTCGACAACCAGCTCGAGCAGGACGCGACCCAGCAGCGTGCGACCGTGATGCGCGAGCTGGTCGACATCTATCTCCGGTTCGCCGAGACGGAGCTGGACCCGGAGGACCGGGGCGAGTACCAGCTGCTCGCCCGGCTCGCCGAGTGGCATCTGCTCGAGCAGAACCTGCTGACGATC] consensusID : consensus_7618#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 420 fasta sequence [AGGGTGTTAGAAGTTGTTATACAGCAACGTGTTGCTTGTGTAAAGCCTGAAGTGTGACACTCGTTTCCAGCAATTCCACCCATCTCTCGACAAAAGACCACCTGTTTCTTGAGTAACAATAACAGTATGGCCATGGGGGGTAGTATACCCCTGCGCACGGCGACACTCTGTCTGGGCACACTGGTTGCTGTGGCCGCACTGCTCCAGTCACCGGTCCCGGTCACCGCCAGCCATGTCAAGGGCGCCAGCCCGATCGATGCGCTGCGCAACCGGTACCTGCAGCAGGAGCGCCGGGCCTGGACGATCGTCAACCAGATCGACGCGGTCGACAACCAGCTCGAGCAGGACGCGACCCAGCAGCGTGCGACCGTGATGCGCGAGCTGGTCGACATCTATCTCCGGTTCGCCGAGACGGAGCTG] [+] EMBL AGA284966 [AGGGTGTTAGAAGTTGTTATACAGCAACGTGTTGCTTGTGTAAAGCCTGAAGTGTGACACTCGTTTCCAGCAATTCCACCCATCTCTCGACAAAAGACCACCTGTTTCTTGAGTAACAATAACAGTATGGCCATGGGGGGTAGTATACCCCTGCGCACGGCGACACTCTGTCTGGGCACACTGGTTGCTGTGGCCGCACTGCTCCAGTCACCGGTCCCGGTCACCGCCAGCCATGTCAAGGGCGCCAGCCCGATCGATGCGCTGCGCAACCGGTACCTGCAGCAGGAGCGCCGGGCCTGGACGATCGTCAACCAGATCGACGCGGTCGACAACCAGCTCGAGCAGGACGCGACCCAGCAGCGTGCGACCGTGATGCGCGAGCTGGTCGACATCTATCTCCGGTTCGCCGAGACGGAGCTG] [+] EMBL AGA283078 [ CGTTTCCAGCAATTCCACCCATCTCTCGACAAAAGACCACCTGTTTCTTGAGTAACAATAACAGTATGGCCATGGGGGGTAGTATACCCCTGCGCACGGCGACACTCTGTCTGGGCACACTGGTTGCTGTGGCCGCACTGCTCCAGTCACCGGTCCCGGTCACCGCCAGCCATGTCAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7618#2 -----------------------CCG-GCGCGAGTGCGTACGCGCGCGGCTTCATCTGTC 36 consensus_7618#3 ------------------------------------------------------------ consensus_7618#1 CCGCGCCATTATTCAGTGAGTGACAGTGCGCGAGTGCGTACGCGCGCGGCTTCATCTGTC 60 consensus_7618#0 --CCGCCATTATTCAGTGAGTGACAGTGCGCGAGTGCGTACGCGCGCGGCTTCATCTGTC 58 consensus_7618#2 CGCCACATATCGACAAAAACCGACAACAGAACGAGGTCGGCAGGGTGTTAGAAGTGTTTG 96 consensus_7618#3 ------------------------------------------------------------ consensus_7618#1 CGCCACATATCGACAAAAACCGACAACAGAACGAGGTCGGCAGGGTGTTAGAAGTGTTTG 120 consensus_7618#0 CGCCACATATCGACAAAAACCGACAACAGAACGAG------------------------- 93 consensus_7618#2 TGTTTATGTGTGTGTGTGTGTGTTGAAAATCCATTCCACCTGTTATAGAGTAACGTGTTG 156 consensus_7618#3 ----------------AGGGTGTTAGAAGT----------TGTTATACAGCAACGTGTTG 34 consensus_7618#1 TGTTTAT----------------------T-----------GTTATAGAGTAACGTGTTG 147 consensus_7618#0 ----------------------------------------TGTTATAGAGTAACGTGTTG 113 ****** ** ********* consensus_7618#2 CATGTGTAAAGCCTGAAGTGTGACACTCGTTTCCAGCAATTCCACCCATCTCTCGACAAA 216 consensus_7618#3 CTTGTGTAAAGCCTGAAGTGTGACACTCGTTTCCAGCAATTCCACCCATCTCTCGACAAA 94 consensus_7618#1 CATGTGTAAAGCCTGAAGTGTGACACTCGTTTCCAGCAATTCCACCCATCTCTCGACAAA 207 consensus_7618#0 CATGTGTAAAGCCTGAAGTGTGACACTCGTTTCCAGCAATTCCACCCATCTCTCGACAAA 173 * ********************************************************** consensus_7618#2 AGACCACCTGTTTCTTGAGTAACAATAACAGTATGGCCATGGGGGGTAGTATACCCCTGC 276 consensus_7618#3 AGACCACCTGTTTCTTGAGTAACAATAACAGTATGGCCATGGGGGGTAGTATACCCCTGC 154 consensus_7618#1 AGACCACCTGTTTCTTGAGTAACAATAACAGTATGGCCATGGGGGGTAGTATACCCCTGC 267 consensus_7618#0 AGACCACCTGTTTCTTGAGTAACAATAACAGTATGGCCATGGGGGGTAGTATACCCCTGC 233 ************************************************************ consensus_7618#2 GCACGGCGACACTCTGTCTGGGCACACTGGTTGCTGTGGCCGCACTGCTCCAGTCACCGG 336 consensus_7618#3 GCACGGCGACACTCTGTCTGGGCACACTGGTTGCTGTGGCCGCACTGCTCCAGTCACCGG 214 consensus_7618#1 GCACGGCGACACTCTGTCTGGGCACACTGGTTGCTGTGGCCGCACTGCTCCAGTCACCGG 327 consensus_7618#0 GCACGGCGACACTCTGTCTGGGCACACTGGTTGCTGTGGCCGCACTGCTCCAGTCACCGG 293 ************************************************************ consensus_7618#2 TCCCGGTCACCGCCAGCCAGGTCAAGGGCGCCAGCCCGATCGATGCGCTGCGCAACCGGT 396 consensus_7618#3 TCCCGGTCACCGCCAGCCATGTCAAGGGCGCCAGCCCGATCGATGCGCTGCGCAACCGGT 274 consensus_7618#1 TCCCGGTCACCGCCAGCCAGGTCAAGGGCGCCAGCCCGATCGATGCGCTGCGCAACCGGT 387 consensus_7618#0 TCCCGGTCACCGCCAGCCAGGTCAAGGGCGCCAGCCCGATCGATGCGCTGCGCAACCGGT 353 ******************* **************************************** consensus_7618#2 ACCTGCAGCAGGAGCGCCGGGCCTGGACGATCGTCAACCAGATCGACGCGGTCGACAACC 456 consensus_7618#3 ACCTGCAGCAGGAGCGCCGGGCCTGGACGATCGTCAACCAGATCGACGCGGTCGACAACC 334 consensus_7618#1 ACCTGCAGCAGGAGCGCCGGGCCTGGACGATCGTCAACCAGATCGACGCGGTCGACAACC 447 consensus_7618#0 ACCTGCAGCAGGAGCGCCGGGCCTGGACGATCGTCAACCAGATCGACGCGGTCGACAACC 413 ************************************************************ consensus_7618#2 AGCTCGAGCAGGACGCGACCCAGCAGCGTGCGACCGTGATGCGCGAGCTGGTCGACATCT 516 consensus_7618#3 AGCTCGAGCAGGACGCGACCCAGCAGCGTGCGACCGTGATGCGCGAGCTGGTCGACATCT 394 consensus_7618#1 AGCTCGAGCAGGACGCGACCCAGCAGCGTGCGACCGTGATGCGCGAGCTGGTCGACATCT 507 consensus_7618#0 AGCTCGAGCAGGACGCGACCCAGCAGCGTGCGACCGTGATGCGCGAGCTGGTCGACATCT 473 ************************************************************ consensus_7618#2 ATCTCCGGTTCGCCGAGACGGAGCTGGACCCGGAGGACCGGGG-CGAGTACCAGCTGCTC 575 consensus_7618#3 ATCTCCGGTTCGCCGAGACGGAGCTG---------------------------------- 420 consensus_7618#1 ATCTCCGGTTCGCCGAGACGGAGCTGGACCCGGAGGACCGGGGGCGAGTACCAGCTGCTC 567 consensus_7618#0 ATCTCCGGTTCGCCGAGACGGAGCTGGACCCGGAGGACCGGGG-CGAGTACCAGCTGCTC 532 ************************** consensus_7618#2 GCCCGGCTCGCCGAGTGGCATCTGCTCGAGCAGAACCTGCTGACGATC------------ 623 consensus_7618#3 ------------------------------------------------------------ consensus_7618#1 GCCCGGCTCGCCGAGTGGCATCTGCTCGAGCAGAACCTGCTGACGATCAACAAGCTGTTC 627 consensus_7618#0 GCCCGGCTCGCCGAGTGGCATCTGCTCGAGCAGAACCTGCTGACGATCAACAAGCTGTTC 592 consensus_7618#2 ------------------------------------------------------------ consensus_7618#3 ------------------------------------------------------------ consensus_7618#1 GAGGTGGTGTACAACTTTCTGC-------------------------------------- 649 consensus_7618#0 GAGGTGGTGTACAACTTTCTGCGCAACAATGCGCCCCGTTTCGCGGAGCAGGCCGAATTT 652 consensus_7618#2 --------------- consensus_7618#3 --------------- consensus_7618#1 --------------- consensus_7618#0 GCACCGGAGGAGATT 667 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||