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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7618#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 667 fasta sequence
[CCGCCATTATTCAGTGAGTGACAGTGCGCGAGTGCGTACGCGCGCGGCTTCATCTGTCCGCCACATATCGACAAAAACCGACAACAGAACGAGTGTTATAGAGTAACGTGTTGCATGTGTAAAGCCTGAAGTGTGACACTCGTTTCCAGCAATTCCACCCATCTCTCGACAAAAGACCACCTGTTTCTTGAGTAACAATAACAGTATGGCCATGGGGGGTAGTATACCCCTGCGCACGGCGACACTCTGTCTGGGCACACTGGTTGCTGTGGCCGCACTGCTCCAGTCACCGGTCCCGGTCACCGCCAGCCAGGTCAAGGGCGCCAGCCCGATCGATGCGCTGCGCAACCGGTACCTGCAGCAGGAGCGCCGGGCCTGGACGATCGTCAACCAGATCGACGCGGTCGACAACCAGCTCGAGCAGGACGCGACCCAGCAGCGTGCGACCGTGATGCGCGAGCTGGTCGACATCTATCTCCGGTTCGCCGAGACGGAGCTGGACCCGGAGGACCGGGGCGAGTACCAGCTGCTCGCCCGGCTCGCCGAGTGGCATCTGCTCGAGCAGAACCTGCTGACGATCAACAAGCTGTTCGAGGTGGTGTACAACTTTCTGCGCAACAATGCGCCCCGTTTCGCGGAGCAGGCCGAATTTGCACCGGAGGAGATT]
[+] EMBL BM591559 [CCGCCATTATTCAGTGAGTGACAGTGCGCGAGTGCGTACGCGCGCGGCTTCATCTGTCCGCCACATATCGACAAAAACCGACAACAGAACGAGTGTTATAGAGTAACGTGTTGCATGTGTAAAGCCTGAAGTGTGACACTCGTTTCCAGCAATTCCACCCATCTCTCGACAAAAGACCACCTGTTTCTTGAGTAACAATAACAGTATGGCCATGGGGGGTAGTATACCCCTGCGCACGGCGACACTCTGTCTGGGCACACTGGTTGCTGTGGCCGCACTGCTCCAGTCACCGGTCCCGGTCACCGCCAGCCAGGTCAAGGGCGCCAGCCCGATCGATGCGCTGCGCAACCGGTACCTGCAGCAGGAGCGCCGGGCCTGGACGATCGTCAACCAGATCGACGCGGTCGACAACCAGCTCGAGCAGGACGCGACCCAGCAGCGTGCGACCGTGATGCGCGAGCTGGTCGACATCTATCTCCGGTTCGCCGAGACGGAGCTGGACCCGGAGGACCGGGGCGAGTACCAGCTGCTCGCCCGGCTCGCCGAGTGGCATCTGCTCGAGCAGAACCTGCTGACGATCAACAAGCTGTTCGAGGTGGTGTACAACTTTCTGCGCAACAATGCGCCCCGTTTCGCGGAGCAGGCCGAATTTGCACCGGAGGAGATT]
[+] EMBL BM634287 [ ccgATTATTCAGTGAGTGACAGTGCGCGAGTGCGTACGCGCGCGGCTTCATCTGTCCGCCACATATCGACAAAAACCGACAACAGAACGAGTGTTATAGAGTAACGTGTTGCATGTGTAAAGCCTGAAGTGTGACACTCGTTTCCAGCAATTCCACCCATCTCTCGACAAAAGACCACCTGTTTCTTGAGTAACAATAACAGTATGGCCATGGGGGGTAGTATACCCCTGCGCACGGCGACACTCTGTCTGGGCACACTGGTTGCTGTGGCCGCACTGCTCCAGTCACCGGTCCCGGTCACCGCCAGCCAGGTCAAGGGCGCCAGCCCGATCGATGCGCTGCGCAACCGGTACCTGCAGCAGGAGCGCCGGGCCTGGACGATCGTCAACCAGATCGACGCGGTCGACAACCAGCTCGAGCAGGACGCGACCCAGCAGCGTGCGACCGTGATGCGCGAGCTGGTCGACATCTATCTCCGGTTCGCCGAGACGGAGCTGGACCCGGAGGACCGGGGCGAGTACCAGCTGCTCGCCCGGCTCGCCGAGTGGCATCTGCTCGAGCAGAACCTGCTGACGATCAACAAGCTGTTCGAGGTGGTGTACAACTTTCTGCG ]
[+] EMBL AGA285073 [ GAACGAGTGTTATACAGCAACGTGTTGCTTGTGTAAAGCCTGAAGTGTGACACTCGTTTCCAGCAATTCCACCCATCTCTCGACAAAAGACCACCTGTTTCTTGAGTAACAATAACAGTATGGCCATGGGGGGTAGTATACCCCTGCGCACGGCGACACTCTGTCTGGGCACACTGGTTGCTGTGGCCGCACTGCTCCAGTCACCGGTCCCGGTCACCGCCAGCCATGTCAAGGGCGCCAGCCCGATCGATGCGCTGCGCAACCGGTACCTGCAGCAGGAGCGCCGGGCCTGGACGATCGTCAACCAGATCGACGCGGTCGACAACCAGCTCGAGCAGGACGCGACCCAGCAGCGTGCGACCGTGATGCGCGAGCTGGTCGACATCTATCTCCGGTTCGCCGAGACGGAGCTGGACCCGGAGGACCGGGGCGAGTACCAGCTGCTCGCCCGGCTCGCCGAGTGGCATCTGCTCGAGCAGAACCTGCTGACGATCAACA ]
consensusID : consensus_7618#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence
[CCGCGCCATTATTCAGTGAGTGACAGTGCGCGAGTGCGTACGCGCGCGGCTTCATCTGTCCGCCACATATCGACAAAAACCGACAACAGAACGAGGTCGGCAGGGTGTTAGAAGTGTTTGTGTTTATTGTTATAGAGTAACGTGTTGCATGTGTAAAGCCTGAAGTGTGACACTCGTTTCCAGCAATTCCACCCATCTCTCGACAAAAGACCACCTGTTTCTTGAGTAACAATAACAGTATGGCCATGGGGGGTAGTATACCCCTGCGCACGGCGACACTCTGTCTGGGCACACTGGTTGCTGTGGCCGCACTGCTCCAGTCACCGGTCCCGGTCACCGCCAGCCAGGTCAAGGGCGCCAGCCCGATCGATGCGCTGCGCAACCGGTACCTGCAGCAGGAGCGCCGGGCCTGGACGATCGTCAACCAGATCGACGCGGTCGACAACCAGCTCGAGCAGGACGCGACCCAGCAGCGTGCGACCGTGATGCGCGAGCTGGTCGACATCTATCTCCGGTTCGCCGAGACGGAGCTGGACCCGGAGGACCGGGGGCGAGTACCAGCTGCTCGCCCGGCTCGCCGAGTGGCATCTGCTCGAGCAGAACCTGCTGACGATCAACAAGCTGTTCGAGGTGGTGTACAACTTTCTGC]
[+] EMBL BM597433 [CCGCGCCATTATTCAGTGAGTGACAGTGCGCGAGTGCGTACGCGCGCGGCTTCATCTGTCCGCCACATATCGACAAAAACCGACAACAGAACGAGGTCGGCAGGGTGTTAGAAGTGTTTGTGTTTATTGTTATAGAGTAACGTGTTGCATGTGTAAAGCCTGAAGTGTGACACTCGTTTCCAGCAATTCCACCCATCTCTCGACAAAAGACCACCTGTTTCTTGAGTAACAATAACAGTATGGCCATGGGGGGTAGTATACCCCTGCGCACGGCGACACTCTGTCTGGGCACACTGGTTGCTGTGGCCGCACTGCTCCAGTCACCGGTCCCGGTCACCGCCAGCCAGGTCAAGGGCGCCAGCCCGATCGATGCGCTGCGCAACCGGTACCTGCAGCAGGAGCGCCGGGCCTGGACGATCGTCAACCAGATCGACGCGGTCGACAACCAGCTCGAGCAGGACGCGACCCAGCAGCGTGCGACCGTGATGCGCGAGCTGGTCGACATCTATCTCCGGTTCGCCGAGACGGAGCTGGACCCGGAGGACCGGGGGCGAGTACCAGCTGCTCGCCCGGCTCGCCGAGTGGCATCTGCTCGAGCAGAACCTGCTGACGATCAACAAGCTGTTCGAGGTGGTGTACAACTTTCTGC]
consensusID : consensus_7618#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence
[CCGGCGCGAGTGCGTACGCGCGCGGCTTCATCTGTCCGCCACATATCGACAAAAACCGACAACAGAACGAGGTCGGCAGGGTGTTAGAAGTGTTTGTGTTTATGTGTGTGTGTGTGTGTTGAAAATCCATTCCACCTGTTATAGAGTAACGTGTTGCATGTGTAAAGCCTGAAGTGTGACACTCGTTTCCAGCAATTCCACCCATCTCTCGACAAAAGACCACCTGTTTCTTGAGTAACAATAACAGTATGGCCATGGGGGGTAGTATACCCCTGCGCACGGCGACACTCTGTCTGGGCACACTGGTTGCTGTGGCCGCACTGCTCCAGTCACCGGTCCCGGTCACCGCCAGCCAGGTCAAGGGCGCCAGCCCGATCGATGCGCTGCGCAACCGGTACCTGCAGCAGGAGCGCCGGGCCTGGACGATCGTCAACCAGATCGACGCGGTCGACAACCAGCTCGAGCAGGACGCGACCCAGCAGCGTGCGACCGTGATGCGCGAGCTGGTCGACATCTATCTCCGGTTCGCCGAGACGGAGCTGGACCCGGAGGACCGGGGCGAGTACCAGCTGCTCGCCCGGCTCGCCGAGTGGCATCTGCTCGAGCAGAACCTGCTGACGATC]
[+] EMBL BM633414 [CCGGCGCGAGTGCGTACGCGCGCGGCTTCATCTGTCCGCCACATATCGACAAAAACCGACAACAGAACGAGGTCGGCAGGGTGTTAGAAGTGTTTGTGTTTATGTGTGTGTGTGTGTGTTGAAAATCCATTCCACCTGTTATAGAGTAACGTGTTGCATGTGTAAAGCCTGAAGTGTGACACTCGTTTCCAGCAATTCCACCCATCTCTCGACAAAAGACCACCTGTTTCTTGAGTAACAATAACAGTATGGCCATGGGGGGTAGTATACCCCTGCGCACGGCGACACTCTGTCTGGGCACACTGGTTGCTGTGGCCGCACTGCTCCAGTCACCGGTCCCGGTCACCGCCAGCCAGGTCAAGGGCGCCAGCCCGATCGATGCGCTGCGCAACCGGTACCTGCAGCAGGAGCGCCGGGCCTGGACGATCGTCAACCAGATCGACGCGGTCGACAACCAGCTCGAGCAGGACGCGACCCAGCAGCGTGCGACCGTGATGCGCGAGCTGGTCGACATCTATCTCCGGTTCGCCGAGACGGAGCTGGACCCGGAGGACCGGGGCGAGTACCAGCTGCTCGCCCGGCTCGCCGAGTGGCATCTGCTCGAGCAGAACCTGCTGACGATC]
consensusID : consensus_7618#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 420 fasta sequence
[AGGGTGTTAGAAGTTGTTATACAGCAACGTGTTGCTTGTGTAAAGCCTGAAGTGTGACACTCGTTTCCAGCAATTCCACCCATCTCTCGACAAAAGACCACCTGTTTCTTGAGTAACAATAACAGTATGGCCATGGGGGGTAGTATACCCCTGCGCACGGCGACACTCTGTCTGGGCACACTGGTTGCTGTGGCCGCACTGCTCCAGTCACCGGTCCCGGTCACCGCCAGCCATGTCAAGGGCGCCAGCCCGATCGATGCGCTGCGCAACCGGTACCTGCAGCAGGAGCGCCGGGCCTGGACGATCGTCAACCAGATCGACGCGGTCGACAACCAGCTCGAGCAGGACGCGACCCAGCAGCGTGCGACCGTGATGCGCGAGCTGGTCGACATCTATCTCCGGTTCGCCGAGACGGAGCTG]
[+] EMBL AGA284966 [AGGGTGTTAGAAGTTGTTATACAGCAACGTGTTGCTTGTGTAAAGCCTGAAGTGTGACACTCGTTTCCAGCAATTCCACCCATCTCTCGACAAAAGACCACCTGTTTCTTGAGTAACAATAACAGTATGGCCATGGGGGGTAGTATACCCCTGCGCACGGCGACACTCTGTCTGGGCACACTGGTTGCTGTGGCCGCACTGCTCCAGTCACCGGTCCCGGTCACCGCCAGCCATGTCAAGGGCGCCAGCCCGATCGATGCGCTGCGCAACCGGTACCTGCAGCAGGAGCGCCGGGCCTGGACGATCGTCAACCAGATCGACGCGGTCGACAACCAGCTCGAGCAGGACGCGACCCAGCAGCGTGCGACCGTGATGCGCGAGCTGGTCGACATCTATCTCCGGTTCGCCGAGACGGAGCTG]
[+] EMBL AGA283078 [ CGTTTCCAGCAATTCCACCCATCTCTCGACAAAAGACCACCTGTTTCTTGAGTAACAATAACAGTATGGCCATGGGGGGTAGTATACCCCTGCGCACGGCGACACTCTGTCTGGGCACACTGGTTGCTGTGGCCGCACTGCTCCAGTCACCGGTCCCGGTCACCGCCAGCCATGTCAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7618#2 -----------------------CCG-GCGCGAGTGCGTACGCGCGCGGCTTCATCTGTC 36
consensus_7618#3 ------------------------------------------------------------
consensus_7618#1 CCGCGCCATTATTCAGTGAGTGACAGTGCGCGAGTGCGTACGCGCGCGGCTTCATCTGTC 60
consensus_7618#0 --CCGCCATTATTCAGTGAGTGACAGTGCGCGAGTGCGTACGCGCGCGGCTTCATCTGTC 58
consensus_7618#2 CGCCACATATCGACAAAAACCGACAACAGAACGAGGTCGGCAGGGTGTTAGAAGTGTTTG 96
consensus_7618#3 ------------------------------------------------------------
consensus_7618#1 CGCCACATATCGACAAAAACCGACAACAGAACGAGGTCGGCAGGGTGTTAGAAGTGTTTG 120
consensus_7618#0 CGCCACATATCGACAAAAACCGACAACAGAACGAG------------------------- 93
consensus_7618#2 TGTTTATGTGTGTGTGTGTGTGTTGAAAATCCATTCCACCTGTTATAGAGTAACGTGTTG 156
consensus_7618#3 ----------------AGGGTGTTAGAAGT----------TGTTATACAGCAACGTGTTG 34
consensus_7618#1 TGTTTAT----------------------T-----------GTTATAGAGTAACGTGTTG 147
consensus_7618#0 ----------------------------------------TGTTATAGAGTAACGTGTTG 113
****** ** *********
consensus_7618#2 CATGTGTAAAGCCTGAAGTGTGACACTCGTTTCCAGCAATTCCACCCATCTCTCGACAAA 216
consensus_7618#3 CTTGTGTAAAGCCTGAAGTGTGACACTCGTTTCCAGCAATTCCACCCATCTCTCGACAAA 94
consensus_7618#1 CATGTGTAAAGCCTGAAGTGTGACACTCGTTTCCAGCAATTCCACCCATCTCTCGACAAA 207
consensus_7618#0 CATGTGTAAAGCCTGAAGTGTGACACTCGTTTCCAGCAATTCCACCCATCTCTCGACAAA 173
* **********************************************************
consensus_7618#2 AGACCACCTGTTTCTTGAGTAACAATAACAGTATGGCCATGGGGGGTAGTATACCCCTGC 276
consensus_7618#3 AGACCACCTGTTTCTTGAGTAACAATAACAGTATGGCCATGGGGGGTAGTATACCCCTGC 154
consensus_7618#1 AGACCACCTGTTTCTTGAGTAACAATAACAGTATGGCCATGGGGGGTAGTATACCCCTGC 267
consensus_7618#0 AGACCACCTGTTTCTTGAGTAACAATAACAGTATGGCCATGGGGGGTAGTATACCCCTGC 233
************************************************************
consensus_7618#2 GCACGGCGACACTCTGTCTGGGCACACTGGTTGCTGTGGCCGCACTGCTCCAGTCACCGG 336
consensus_7618#3 GCACGGCGACACTCTGTCTGGGCACACTGGTTGCTGTGGCCGCACTGCTCCAGTCACCGG 214
consensus_7618#1 GCACGGCGACACTCTGTCTGGGCACACTGGTTGCTGTGGCCGCACTGCTCCAGTCACCGG 327
consensus_7618#0 GCACGGCGACACTCTGTCTGGGCACACTGGTTGCTGTGGCCGCACTGCTCCAGTCACCGG 293
************************************************************
consensus_7618#2 TCCCGGTCACCGCCAGCCAGGTCAAGGGCGCCAGCCCGATCGATGCGCTGCGCAACCGGT 396
consensus_7618#3 TCCCGGTCACCGCCAGCCATGTCAAGGGCGCCAGCCCGATCGATGCGCTGCGCAACCGGT 274
consensus_7618#1 TCCCGGTCACCGCCAGCCAGGTCAAGGGCGCCAGCCCGATCGATGCGCTGCGCAACCGGT 387
consensus_7618#0 TCCCGGTCACCGCCAGCCAGGTCAAGGGCGCCAGCCCGATCGATGCGCTGCGCAACCGGT 353
******************* ****************************************
consensus_7618#2 ACCTGCAGCAGGAGCGCCGGGCCTGGACGATCGTCAACCAGATCGACGCGGTCGACAACC 456
consensus_7618#3 ACCTGCAGCAGGAGCGCCGGGCCTGGACGATCGTCAACCAGATCGACGCGGTCGACAACC 334
consensus_7618#1 ACCTGCAGCAGGAGCGCCGGGCCTGGACGATCGTCAACCAGATCGACGCGGTCGACAACC 447
consensus_7618#0 ACCTGCAGCAGGAGCGCCGGGCCTGGACGATCGTCAACCAGATCGACGCGGTCGACAACC 413
************************************************************
consensus_7618#2 AGCTCGAGCAGGACGCGACCCAGCAGCGTGCGACCGTGATGCGCGAGCTGGTCGACATCT 516
consensus_7618#3 AGCTCGAGCAGGACGCGACCCAGCAGCGTGCGACCGTGATGCGCGAGCTGGTCGACATCT 394
consensus_7618#1 AGCTCGAGCAGGACGCGACCCAGCAGCGTGCGACCGTGATGCGCGAGCTGGTCGACATCT 507
consensus_7618#0 AGCTCGAGCAGGACGCGACCCAGCAGCGTGCGACCGTGATGCGCGAGCTGGTCGACATCT 473
************************************************************
consensus_7618#2 ATCTCCGGTTCGCCGAGACGGAGCTGGACCCGGAGGACCGGGG-CGAGTACCAGCTGCTC 575
consensus_7618#3 ATCTCCGGTTCGCCGAGACGGAGCTG---------------------------------- 420
consensus_7618#1 ATCTCCGGTTCGCCGAGACGGAGCTGGACCCGGAGGACCGGGGGCGAGTACCAGCTGCTC 567
consensus_7618#0 ATCTCCGGTTCGCCGAGACGGAGCTGGACCCGGAGGACCGGGG-CGAGTACCAGCTGCTC 532
**************************
consensus_7618#2 GCCCGGCTCGCCGAGTGGCATCTGCTCGAGCAGAACCTGCTGACGATC------------ 623
consensus_7618#3 ------------------------------------------------------------
consensus_7618#1 GCCCGGCTCGCCGAGTGGCATCTGCTCGAGCAGAACCTGCTGACGATCAACAAGCTGTTC 627
consensus_7618#0 GCCCGGCTCGCCGAGTGGCATCTGCTCGAGCAGAACCTGCTGACGATCAACAAGCTGTTC 592
consensus_7618#2 ------------------------------------------------------------
consensus_7618#3 ------------------------------------------------------------
consensus_7618#1 GAGGTGGTGTACAACTTTCTGC-------------------------------------- 649
consensus_7618#0 GAGGTGGTGTACAACTTTCTGCGCAACAATGCGCCCCGTTTCGCGGAGCAGGCCGAATTT 652
consensus_7618#2 ---------------
consensus_7618#3 ---------------
consensus_7618#1 ---------------
consensus_7618#0 GCACCGGAGGAGATT 667
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||