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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7622#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 944 fasta sequence
[CCCGAGAACATGTGGCCTTTTTTTTTTTTTTTTTGTACAGAAACCTGCAAATGTTTATAATTGTATATTGAAGAGAGAGAGAGGGGAAAAAGGTGTAAAACTTTCGCAATAAAGCCACAAAAGACAATGCATTGTTACCACACTAAGTCATAAAGCAAACGGAAAAGCGTGGCATTATTTGTGTTTTACGGCATTTGGGTGAACCGCTTGTAATCAATCTTTTCCAGCTGCACCAGCGGTTTCAGCTGCTCGGCAAAGATGCGCATATCCTCGGCGATTGCGTCCTGGCCCTTGGGCGCCAGCACCGACAGCTCCACCAAATAGCTTTGGGAGATGGGTTCGGTCATGTTTTTCAAGATTTTAGAGACGGTAATCTTCATGCGACCCTTGCGAAACATGTACCCCTTGGTGGAGTACTCGAAATCGAGCCGGAAGCCCATCTCGGTCAGGAAATCGATCACGTGCGGGGTGCAGGCAATGTCGAGGCTGCTGCGGACCAGCGTGGGACGGGTCCGATCGCCCAGCTCGGGTTGACCGATGTAGCGCAGCTGG-AGGGGGGCTTCCACGTCCTGCGCACGGCGCACACGGACCGTCATTACGGGGGTCTTCTCTGTAGGAAGCTTCAAGCTGAAGCACATTTCAATATCGCTGAAGGTTTCCGGGCTGGCGTCCACATTATCGCAAAGACCTCGCAATCGGTGAAGCAGATTCTCGGCGGCCGAATCTAGTATCGAACCCTGCAGCAGAAACTCCTGATTCGGTATGATATTTGAGCTGAGCGCTTGCTGCAGCAACTCGGCAGCATTAACTTGTGCACCCATCGTACGTTTGGGGAATGAGAGTTTTTATCACAAATTTCGGTTAAAAATGCAACCACAACTGGTAAATGTTTACCGGAGCGCGCACAGGAAAAAAAAACCAGTGGGCCAACAGTTCTCGAGGAA]
[-] EMBL CNS09IH8 [CCCGAGAACATGTGGCCTTTTTTTTTTTTTTTTTGTACAGAAACCTGCAAATGTTTATAATTGTATATTGAAGAGAGAGAGAGGGGAAAAAGGTGTAAAACTTTCGCAATAAAGCCACAAAAGACAATGCATTGTTACCACACTAAGTCATAAAGCAAACGGAAAAGCGTGGCATTATTTGTGTTTTACGGCATTTGGGTGAACCGCTTGTAATCAATCTTTTCCAGCTGCACCAGCGGTTTCAGCTGCTCGGCAAAGATGCGCATATCCTCGGCGATTGCGTCCTGGCCCTTGGGCGCCAGCACCGACAGCTCCACCAAATAGCTTTGGGAGATGGGTTCGGTCATGTTTTTCAAGATTTTAGAGACGGTAATCTTCATGCGACCCTTGCGAAACATGTACCCCTTGGTGGAGTACTCGAAATCGAGCCGGAAGCCCATCTCGGTCAGGAAATCGATCACGTGCGGGGTGCAGGCAATGTCGAGGCTGCTGCGGACCAGCGTGGGACGGGTCCGATCGCCCAGCTCGGGTTGACCGATGTAGCGCAGCTGG AGGGGGGCTTCCACGTCCT CGCACGGCGCACACGGACCGTCATTACGGGGGTCTTCTCTGTAGGAAGCTTCAAGCTGAAGCACATTTCAATATCGCTGAAGGTTTCCGGGCTGGCGTCCACATTATCGCAAAGACCTCGCAATCGGTGAAGCAGATTCTCGGCGGCCGAATCTAGTATCGAACCCTGCAGCAGAAACTCCTGATTCGGTATGATATTTGAGCT ]
[+] EMBL CNS09IH9 [ GCAAATGTTTATAATTGTATATTGAAGAGAGAGAGAGGGGAAAAAGGTGTAAAACTTTCGCAATAAAGCCACAAAAGACAATGCATTGTTACCACACTAAGTCATAAAGCAAACGGAAAAGCGTGGCATTATTTGTGTTTTACGGCATTTGGGTGAACCGCTTGTAATCAATCTTTTCCAGCTGCACCAGCGGTTTCAGCTGCTCGGCAAAGATGCGCATATCCTCGGCGATTGCGTCCTGGCCCTTGGGCGCCA CACCGACAGCTCCACCAAATAGCTTTGGGAGATGGGTTCGGTCATGTTTTTCAAGATTTTAGAGACGGTAATCTTCATGCGACCCTTGCGAAACATGTACCCCTTGGTGGAGTACTCGAAATCGAGCCGGAAGCCCATCTCGGTCAGGAAATCGATCACGTGCGGGGTGCAGGCAATGTCGAGGCTGCTGCGGACCAGCGTGGGACGGGTCCGATCGCCCAGCTCGGGTTGACCGATGTAGCGCA CTGGAAGGGGGGCTTCCACGTCCTGCGCACGGCGCACACGGACCGTCATTACGGGGGTCTTCTCTGTAGGAAGCTTCAAGCTGAAGCACATTTCAATATCGCTGAAGGTTTCCGGGCTGGCGTCCACATTATCGCAAAGACCTCGCAATCGGTGAAGCAGATTCTCGGCGGCCGAATCTAGTATCGAACCCTGCAGCAGAAACTCCTGATTCGGTATGATATTTGAGCTGAGCGCTTGCTGCAGCAACTCGGCAGCATTAACTTGTGCACCCATCGTACGTTTGGGGAATGAGAGTTTTTATCACAAATTTCGGTTAAAAATGCAACCACAACTGGTAAATGTTTACCGGAGCGCGCACAGGAAAAAAAAACCAGTGGGCCAACAGTTCTCGAGGAA]
[+] EMBL CNS09BFA [ AATTGTATATTGAAGAGAGAGAGAGGGGAAAAAGGTGTAAAACTTTCGCAATAAAGCCACAAAAGACAATGCATTGTTACCACACTAAGTCATAAAGCAAACAGAAAAGCGTGGAATTATTTGTGTTTTACGGCATTTGGGCGAACCGCTTGTAATCAATCTTTTCCAGCTGCACCAGCGGTTTCAGCTGCTCGGCAAAGATGCGCATATCCTCGGCGATTGCGTCCTGGCCCTTGGGCGCCA CACCGACAGCTCCACCAGATAGCTTTGGGAGATGGGTTCGGTCATGTTTTTCAGGATTTTAGAGACGGTAATCTTCATGCGCCCCTTGCGAAACATGTACCCCTTGGTGGAGTACTCGAAGTCGAGCCGGAAGCCCATCTCGGTGAGGAAATCGATCACGTGCGGGGTGCAGGCAATTTCGAGGCTGCTGCGGACCAGCGTGGGACGGGTCC ]
[-] EMBL CNS09MTY [ ACCACACTAAGTCATAAAGCAAACAGAAAAGCGTGGAATTATTTGTGTTTTACGGCATTTGGGCGAACCGCTTGTAATCAATCTTTTCCAGCTGCACCAGCGGTTTCAGCTGCTCGGCAAAGATGCGCATATCCTCGGCGATTGCGTCCTGGCCCTTGGGCGCCAGCACCGACAGCTCCACCAGATAGCTTTGGGAGATGGGTTCGGTCATGTTTTTCAGGATTTTAGAGACGGTAATCTTCATGCGCCCCTTGCGAAACATGTACCCCTTGGTGGAGTACTCGAAGTCGAGCCGGAAGCCCATCTCGGTGAGGAAATCGATCACGTGCGGGGTGCAGGCAATGTCGAGGCTGCTGCGGACCAGCGTGGGACGGGTCCGGTCGCCCAGCTCGGGTTGGCCGATGTAGCGCAGCTGG AGGGGGGCTTCCACGTCCTGCGCACGGCGCACACGGACCGTCATTACGGGGGTCTTCTCTGTAGGAAGCTTCAAGCTGAAGCACATTTCAATATCGCTGAAGGTTTCCGGGCTAGCGTCCACATTGTCGCAAAGACCTCGCAATCGGTGAAGCAGATTCTCGGCAGCCGAATCTAGTATCGACCCTTGCAGTAGAAACTCCTGATTCGGTATGATATTTGAGCT ]
consensusID : consensus_7622#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence
[CTCGCAATCTCTAAATCCATAGAAAAGAAGAAGGGACATTCCAAAACTGGGACGCACATTCACGAACTTTATCGCCACCGAATAATGTCTATATCTCAGGCGTGAGACAAGACCTGAAAAGAGTCTATAAAATCTGGTTCCGGAAGACTCTATACTGGTTCAGCGTATCACTCCTCTTGGAGCGAGAGTTGTTGTGGAGGCACAAACCAGACAATATTATACATTGCACTGAATCTGGTACTGTCCTTTGCATCTGCAAGGACATCTGCATTGAGAGATCATCGGTGAAGCAGATTCTCGGCAGCCGAATCTAGTATCGACCCTTGCAGTAGAAACTCCTGATTCGGTATGATATTTGAGCTGAGCGCTTGCTGCAGCAACTCGGCAGCATTAACTTGTGCACCCATCGTTCGTTTGGGGAATGTGAGTTTTTATCACAAATTTCGGTTAAAAATGCAACCACAACTGGTAAATGTTTACCGGAGCGCGCAGGAG]
[-] EMBL BM643073 [CTCGCAATCTCTAAATCCATAGAAAAGAAGAAGGGACATTCCAAAACTGGGACGCACATTCACGAACTTTATCGCCACCGAATAATGTCTATATCTCAGGCGTGAGACAAGACCTGAAAAGAGTCTATAAAATCTGGTTCCGGAAGACTCTATACTGGTTCAGCGTATCACTCCTCTTGGAGCGAGAGTTGTTGTGGAGGCACAAACCAGACAATATTATACATTGCACTGAATCTGGTACTGTCCTTTGCATCTGCAAGGACATCTGCATTGAGAGATCATCGGTGAAGCAGATTCTCGGCAGCCGAATCTAGTATCGACCCTTGCAGTAGAAACTCCTGATTCGGTATGATATTTGAGCTGAGCGCTTGCTGCAGCAACTCGGCAGCATTAACTTGTGCACCCATCGTTCGTTTGGGGAATGTGAGTTTTTATCACAAATTTCGGTTAAAAATGCAACCACAACTGGTAAATGTTTACCGGAGCGCGCAGGAG]
consensusID : consensus_7622#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 458 fasta sequence
[TCGAAATCGAGCCGGAAGCCCATCTCGGTCAGGAAATCGATCACGTGCGGGGTGCAGGCAATGTCGAGGCTGCTGCGGACCAGCGTGGGACGGGTCCGATCGCCCAGCTCGGGTTGACCGATGTAGCGCAGCTGGAGGGGGGCTTCCACGTCCTGCGCACGGCGCACACGGACCGTCATTACGGGGGTCTTCTCTGTAGGAAGCTTCAAGCTGAAGCACATTTCAATATCGCTGAAGGTTTCCGGGCTGGCGTCCACATTATCGCAAAGACCTCGCAATCGGTGAAGCAGATTCTCGGCGGCCGAATCTAGTATCGAACCCTGCAGCAGAAACTCCTGATTCGGTATGATATTTGAGCTGAGCGCTTGCTGCAGCAACTCGGCAGCATTAACTTGTGCACCCATCGTACGTTTGGGGAATGAGAGTTTTATCACAAATTTCGGTACCTCGNGGCGATT]
[-] EMBL AL932717 [TCGAAATCGAGCCGGAAGCCCATCTCGGTCAGGAAATCGATCACGTGCGGGGTGCAGGCAATGTCGAGGCTGCTGCGGACCAGCGTGGGACGGGTCCGATCGCCCAGCTCGGGTTGACCGATGTAGCGCAGCTGGAGGGGGGCTTCCACGTCCTGCGCACGGCGCACACGGACCGTCATTACGGGGGTCTTCTCTGTAGGAAGCTTCAAGCTGAAGCACATTTCAATATCGCTGAAGGTTTCCGGGCTGGCGTCCACATTATCGCAAAGACCTCGCAATCGGTGAAGCAGATTCTCGGCGGCCGAATCTAGTATCGAACCCTGCAGCAGAAACTCCTGATTCGGTATGATATTTGAGCTGAGCGCTTGCTGCAGCAACTCGGCAGCATTAACTTGTGCACCCATCGTACGTTTGGGGAATGAGAGTTTTATCACAAATTTCGGTACCTCGNGGCGATT]
[-] EMBL CNS09BF9 [ CCAGCGTGGGACGGGTCCGGTCGCCCAGCTCGGGTTGGCCGATGTAGCGCAGCTGGAGGGGGGCTTCCACGTCCTG GCACGGCGCACACGGACCGTCATTACGGGGGTCTTCTCTGTAGGAAGCTTCAAGCTGAAGCACATTTCAATATCGTTGAAGGTTTCCGGGCTAGCGTCCACATTGTCGCAAAGACCTCGCAATCGGTGAAGCAGATTCTCGGCAGCCGAATCTAGTATCGACCCTTGCAGTAGAAACTCCTGATTCGGTATGATATTTGAGCT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7622#0 CCCGAGAACATGTGGCCTTTTTTTTTTTTTTTTTGTACAGAAACCTGCAAATGTTTATAA 60
consensus_7622#2 ------------------------------------------------------------
consensus_7622#1 ------------------------------------------------------------
consensus_7622#0 TTGTATATTGAAGAGAGAGAGAGGGGAAAAAGGTGTAAAACTTTCGCAATAAAGCCACAA 120
consensus_7622#2 ------------------------------------------------------------
consensus_7622#1 ------------------------------------------------------------
consensus_7622#0 AAGACAATGCATTGTTACCACACTAAGTCATAAAGCAAACGGAAAAGCGTGGCATTATTT 180
consensus_7622#2 ------------------------------------------------------------
consensus_7622#1 ------------------------------------------------------------
consensus_7622#0 GTGTTTTACGGCATTTGGGTGAACCGCTTGTAATCAATCTTTTCCAGCTGCACCAGCGGT 240
consensus_7622#2 ------------------------------------------------------------
consensus_7622#1 ------------------------------------------------------------
consensus_7622#0 TTCAGCTGCTCGGCAAAGATGCGCATATCCTCGGCGATTGCGTCCTGGCCCTTGGGCGCC 300
consensus_7622#2 ------------------------------------------------------------
consensus_7622#1 ------------------------------------------------------------
consensus_7622#0 AGCACCGACAGCTCCACCAAATAGCTTTGGGAGATGGGTTCGGTCATGTTTTTCAAGATT 360
consensus_7622#2 ------------------------------------------------------------
consensus_7622#1 ------------------------------------------------------------
consensus_7622#0 TTAGAGACGGTAATCTTCATGCGACCCTTGCGAAACATGTACCCCTTGGTGGAGTACTCG 420
consensus_7622#2 ---------------------------------------------------------TCG 3
consensus_7622#1 -----------------------------------------CTCGCAATCTCTAAATCCA 19
*
consensus_7622#0 AAATCGAGCCGGAAGCCCATCTCGGTCAGGAAATCGATCACGTGCGGGGTGCAG-GCAAT 479
consensus_7622#2 AAATCGAGCCGGAAGCCCATCTCGGTCAGGAAATCGATCACGTGCGGGGTGCAG-GCAAT 62
consensus_7622#1 TAGAAAAGAAGAAGGGACATTCCAAAACTGGGA-CGCACATTCACGAACTTTATCGCCAC 78
* ** * * * *** * * * ** ** ** * * ** *
consensus_7622#0 GTCGAGGCTGCTGCGGACCAG-CGTGGGACGGGTCCGATCGCCCAGCTCGGGTTGACCGA 538
consensus_7622#2 GTCGAGGCTGCTGCGGACCAG-CGTGGGACGGGTCCGATCGCCCAGCTCGGGTTGACCGA 121
consensus_7622#1 CGAATAATGTCTATATCTCAGGCGTGAGACAAGACCTGAAAAG-AGTCTATAAAATCTGG 137
** *** **** *** * ** ** * *
consensus_7622#0 TGTAGCGCAGCTGGAGGGGGGCTTCCACGTCCTGCGCACGGCGCACACGGACCGTCATTA 598
consensus_7622#2 TGTAGCGCAGCTGGAGGGGGGCTTCCACGTCCTGCGCACGGCGCACACGGACCGTCATTA 181
consensus_7622#1 TTCCGGAAGACTCTATACTGG-TTCAGCGTAT--CACTCCTCTTGGAGCGAGAGTTGTTG 194
* * ** * ** *** *** * * * * * ** ** **
consensus_7622#0 CGGGGGTCTTCTCTGTAGGAAGCTTCAAGCTGAAGCACATTTCAATATCGCTGAAGGTTT 658
consensus_7622#2 CGGGGGTCTTCTCTGTAGGAAGCTTCAAGCTGAAGCACATTTCAATATCGCTGAAGGTTT 241
consensus_7622#1 TGGAGGCACAAACCAGACAATATTATACATTGCACTGAATCT-GGTACTGTCCTTTGCAT 253
** ** * * * * * ** * ** * ** * * *
consensus_7622#0 CCGGGCTGGCGTCCACATTATCGCAAAGACCTCGCAATCGGTGAAGCAGATTCTCGGCGG 718
consensus_7622#2 CCGGGCTGGCGTCCACATTATCGCAAAGACCTCGCAATCGGTGAAGCAGATTCTCGGCGG 301
consensus_7622#1 CTGCAAGGACATCTGCATTG----AGAGATC-----ATCGGTGAAGCAGATTCTCGGCAG 304
* * * * ** **** * *** * ********************** *
consensus_7622#0 CCGAATCTAGTATCGAACCCTGCAGCAGAAACTCCTGATTCGGTATGATATTTGAGCTGA 778
consensus_7622#2 CCGAATCTAGTATCGAACCCTGCAGCAGAAACTCCTGATTCGGTATGATATTTGAGCTGA 361
consensus_7622#1 CCGAATCTAGTATCGACCCTTGCAGTAGAAACTCCTGATTCGGTATGATATTTGAGCTGA 364
**************** ** ***** **********************************
consensus_7622#0 GCGCTTGCTGCAGCAACTCGGCAGCATTAACTTGTGCACCCATCGTACGTTTGGGGAATG 838
consensus_7622#2 GCGCTTGCTGCAGCAACTCGGCAGCATTAACTTGTGCACCCATCGTACGTTTGGGGAATG 421
consensus_7622#1 GCGCTTGCTGCAGCAACTCGGCAGCATTAACTTGTGCACCCATCGTTCGTTTGGGGAATG 424
********************************************** *************
consensus_7622#0 AGAGTTTTTATCACAAATTTCGGTTAAAAATGCAACCACAACTGGTAAATGTTTACCGGA 898
consensus_7622#2 AGAGTTTT-ATCACAAATTTCGGT--ACCTCGNGGCGATT-------------------- 458
consensus_7622#1 TGAGTTTTTATCACAAATTTCGGTTAAAAATGCAACCACAACTGGTAAATGTTTACCGGA 484
******* *************** * * * *
consensus_7622#0 GCGCGCACAGGAAAAAAAAACCAGTGGGCCAACAGTTCTCGAGGAA 944
consensus_7622#2 ----------------------------------------------
consensus_7622#1 GCGCGCAGGAG----------------------------------- 495
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||