These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7625#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1498 fasta sequence [CCGGCTCGATCATTGCATAGTATGTCCCTGCCGAGAAGACTGTCCAGTGCTTTCACACCGCTGAGTGCCATCGAAGAAGTCATCGAGTCAAGCGCCATGGCTGATGGGGTCATTTCAATAAAGCTAGCCATACATGACAGCAACCAAGGGGATGGAGCTCTCTATCGACTGAAGAAAAACTCGCTGGTGCATGTGCATCCGGGTGCATCGCTTCTGGGACGCCGGGTTGCGCTTTACTGCAACTACCCAGCGGATGATAAGGAGTTTTGCCGAAAGACCTACAGACGCCTAGAATGGTGTTCGGCAGCGGGATCACCGTTGGAAACGAGCGCGAGCGGATCCGAATACACCTCCATCAAGGACGTGGATTATTATTGCAATGTTCACTTTACCAAATCGGGAGCGTATCACTTTTATGCCTTGTACGAAGAGTGTCCCGAGGCGGGGGCACAGGCTGGCCTGTACGTACAAATTGAGCCGCAGCTGTCGGTTGGATCGGGAGAGGCCGCCACAACGCTGCCCCTCGATGCCATCCGCTGTCAGACGGTGATTTCGAAGCTGCTCGGACCGTTGGACACGTGGGAGGCAAAGTTGCGCGTGGGCAAGGAGTCGGGCTACAACATGGTTCACTTTACGCCCGTGCAAGAGCTGGGCGGATCGCGCTCCGCCTACTCGCTGCGCAACCAGCTCAAGGTGAATCCGGACTTCCAGAACAAGGGCGGCAAGGAGGTGAGCTATGACGATTTGGCCGTTTTAATGCGCAAAATGCGCGAAGAGTGGAACGTTGCATCGATTTGTGACATTGTGCTGAACCACACGGCCAACGAGTCGATCTGGATTCGGGAGTATCCGGAGTGCAGCTACAATTGCTTCACCTGTCCGCATCTGCGGCCGGCCTTCCTGCTCGACGCAATGCTGGCCCGTGTCGGAGAGGACGTGAAGGACGGTATGCTGGCGCACGTTGGCGTGCCGGAGGTGGTCGAAACGGAGGATCATCTGCAGGCCATTCGTTGGCAGATCCATTCGAACTACTTGCCGCAGGTGAAGCTGTACGAGCTGTACCAGTGCGATGTGGACAAGTACGTGTCGCGGTTCAACGACGAGTGCAGCAAACGCAGCCCCAGCCGTGCGCAGGATATTCCCGAGGGCGATATAAAGCTGCGGATGGACCCGGAGCATCGCCGACTGGGTGCAGAGATCGACTTCGAACGTGCCATGAGCATCTACAACGTGTTCCGGCAGGACTGTTTCGATGAGGACAGTCGTAAGCGCAAGTGCACCGAGGTGTTCCGCGCTCGGTTGCAGTTCCTGAATGAAGAGGTGCGCCGGGAAATACAGGAACATCTGGACTACGCCATCGACAACTGTCTGGCCGGCACACGCTATGAACGTGTGCAGGGCGATGGACCCCAGGTGAAGGGCATATCGGTGAAGTACCCGCTGTTCATGAAGTACTTTACGCACTACGGAACGCAGGGTAAATCGCTCAAGGACATCG] [+] EMBL BM630907 [CCGGCTCGATCATTGCATAGTATGTCCCTGCCGAGAAGACTGTCCAGTGCTTTCACACCGCTGAGTGCCATCGAAGAAGTCATCGAGTCAAGCGCCATGGCTGATGGGGTCATTTCAATAAAGCTAGCCATACATGACAGCAACCAAGGGGATGGAGCTCTCTATCGACTGAAGAAAAACTCGCTGGTGCATGTGCATCCGGGTGCATCGCTTCTGGGACGCCGGGTTGCGCTTTACTGCAACTACCCAGCGGATGATAAGGAGTTTTGCCGAAAGACCTACAGACGCCTAGAATGGTGTTCGGCAGCGGGATCACCGTTGGAAACGAGCGCGAGCGGATCCGAATACACCTCCATCAAGGACGTGGATTATTATTGCAATGTTCACTTTACCAAATCGGGAGCGTATCACTTTTATGCCTTGTACGAAGAGTGTCCCGAGGCGGGGGCACAGGCTGGCCTGTACGTACAAATTGAGCCGCAGCTGTCGGTTGGATCGGGAGAGGCCGCCACAACGCTGCCCCTCGATGCCATCCGCTGTCAGACGGTGATTTCGAAGCTGCTCGGACCGTTGGACACGTGGGAGGCAAAGTTGCGCGTGGGCAAGGAGTCGGGCTACAACATGGTTCACTTTAC ] [+] EMBL BM639639 [ ccgCTGTCCAGTGCTTTCACACCGCTGAGTGCCATCGAAGAAGTCATCGAGTCAAGCGCCATGGCTGATGGGGTCATTTCAATAAAGCTAGCCATACATGACAGCAACCAAGGGGATGGAGCTCTCTATCGACTGAAGAAAAACTCGCTGGTGCATGTGCATCCGGGTGCATCGCTTCTGGGACGCCGGGTTGCGCTTTACTGCAACTACCCAGCGGATGATAAGGAGTTTTGCCGAAAGACCTACAGACGCCTAGAATGGTGTTCGGCAGCGGGATCACCGTTGGAAACGAGCGCGAGCGGATCCGAATACACCTCCATCAAGGACGTGGATTATTATTGCAATGTTCACTTTACCAAATCGGGAGCGTATCACTTTTATGCCTTGTACGAAGAGTGTCCCGAGGCGGGGGCACAGGCTGGCCTGTACGTACAAATTGAGCCGCAGCTGTCGGTTGGATCGGGAGAGGCCGCCACAACGCTGCCCCTCGATGCCATCCGCTGTCAGACGGTGATTTCGAAGCTGCTCGGACCGTTGGACACGTGGGAGGCAAAGTTGCGCGTGGGCAAGGAGTCGGGCTACAACATGGTTCACTTTACGCCCGTGCAAGAGCTGGGCGGATCGCGCTCCGCCTACTCGCTGCGCAACCAGCTCAAGGTGAATCCGGACTTCCAGAACAAGG ] [+] EMBL BM631284 [ ccgGGGAGAGGCCGCCACAACGCTGCCCCTCGATGCCATCCGCTGTCAGACGGTGATTTCGAAGCTGCTCGGACCGTTGGACACGTGGGAGGCAAAGTTGCGCGTGGGCAAGGAGTCGGGCTACAACATGATTCACTTTACGCCCGTGCAAGAGCTGGGCGGATCGCGCTCCGCCTACTCGCTGCGCAACCAGCTCAAGGTGAATCCGGACTTCCAGAGCAAGGGCGGCAAGGAGGTGAGCTATGACGATTTGGCCGTTTTAATGCGCAAAATGCGCGAAGAGTGGAACGTTGCATCGATTTGTGACATTGTGCTGAACCACACGGCCAACGAGTCGATCTGGATTCGGGAGTATCCGGAGTGCAGCTACAATTGCTTCACCTGTCCGCATCTGCGGCCGGCCTTCCTGCTCGACGCAATGCTGGCCCGTGTCGGAGAGGACGTGAAGGACGGTATGCTGGCGCACGTTGGCGTG ] [+] EMBL BM643467 [ ccgCTGGATTCGGGAGTATCCGGAGTGCAGCTACAATTGCTTCACCTGTCCGCATCTGCGGCCGGCCTTCCTGCTCGACGCAATGCTGGCCCGTGTCGGAGAGGACGTGAAGGACGGCATGTTGGCGCACGTTGGCGTGCCGGAGGTGGTCGAAACGGAGGATCATCTGCAGGCCATTCGTTGGCAGATCCATTCGAACTACTTGCCGCAGGTGAAGCTGTACGAGCTGTACCAGTGCGATGTGGACAAGTACGTGTCGCGGTTCAACGACGAGTGCAGCAAACGCAGCCCCAGCCGTGCGCAGGATATTCCCGAGGGCGATATAAAGCTGCGGATGGACCCGGAGCATCGCCGACTGGGTGCAGAGATCGACTTCGAACGTGCCATGAGCATCTACAACGTGTTCCGGCAGGACTGTTTCGATGAGGACAGTCGTAAGCGCAAGTGCACCGAGGTGTTCCGCGCTCGGTTGCAGTTCCTGAATGAAGAGGTGCGCCGGGAAATACAGGAACATCTGGACTACGCCATCGACAACTGTCTGGCCGGCACACGCTATGAACGTGTGCAGGGCGATGGACCCCAGGTGAAGGGCATATCGGTGAAGTACCCGCTGTTCATGAAGTACTTTACGCACTACGGAACGCAGGGTAAATCGCTCAAGGACATCG] consensusID : consensus_7625#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 691 fasta sequence [CCGAACAAAACTGATCAACAGCGGTCGGTTAAAGTTGTGGAAAAAGAGTGCCATCGAAGAAGTCATCGAGTCAAGCGCCATGGCTGATGGGGTCA-TTTCAATAAAGCTAGCCATACATGACAGCAACCAAGGGGATGGAGCTCTCTATCGACTGAAGAAAAACTCGCTGGTGCATGTGCATCCGGGTGCATCGCTTCTGGGACGCCGGGTTGCGCTTTACTGCAACTACCCAGCGGATGATAAGGAGTTTTGCCGAAAGACCTACAGACGCCTAGAATGGTGTTCGGCAGCGGGATCACCGTTGGAAACGAGCGCGAGCGGATCCGAATACACCTCCATCAAGGACGTGGATTATTATTGCAATGTTCACTTTACCAAATCGGGAGCGTATCACTTTTATGCCTTGTACGAAGAGTGTCCCGAGGCGGGGGCACAGGCTGGCCTGTACGTACAAATTGAGCCGCAGCTGTCGGTTGGATCGGGAGAGGCCGCCACAACGCTGCCCCTCGATGCCATCCGCTGTCAGACGGTGATTTCGAAGCTGCTCGGACCGTTGGACACGTGGGAGGCAAAGTTGCGCGTGGGCAAGGAGTCGGGCTACAACATGGTTCACTTTACGCCCGTGCAAGAGCTGGGCGGATCGCGCTCCGCCTACTCGCTGCGCAACCAGCTCAAGGTGAATCCGGACTTC] [+] EMBL BM656011 [CCGAACAAAACTGATCAACAGCGGTCGGTTAAAGTTGTGGAAAAAGAGTGCCATCGAAGAAGTCATCGAGTCAAGCGCCATGGCTGATGGGGTCA TTTCAATAAAGCTAGCCATACATGACAGCAACCAAGGGGATGGAGCTCTCTATCGACTGAAGAAAAACTCGCTGGTGCATGTGCATCCGGGTGCATCGCTTCTGGGACGCCGGGTTGCGCTTTACTGCAACTACCCAGCGGATGATAAGGAGTTTTGCCGAAAGACCTACAGACGCCTAGAATGGTGTTCGGCAGCGGGATCACCGTTGGAAACGAGCGCGAGCGGATCCGAATACACCTCCATCAAGGACGTGGATTATTATTGCAATGTTCACTTTACCAAATCGGGAGCGTATCACTTTTATGCCTTGTACGAAGAGTGTCCCGAGGCGGGGGCACAGGCTGGCCTGTACGTACAAATTGAGCCGCAGCTGTCGGTTGGATCGGGAGAGGCCGCCACAACGCTGCCCCTCGATGCCATCCGCTGTCAGACGGTGATTTCGAAGCTGCTCGGACCGTTGGACACGTGGGAGGCAAAGTTGCGCGTGGGCAAGGAGTCGGGCTACAACATGGTTCACTTTACGCCCGTGCAAGAGCTGGGCGGATCGCGCTCCGCCTACTCGCTGCGC ] [+] EMBL BM631051 [ ccgGCGGTCGGTTAAAGTTGTGGAAAAAGAGTGCCATCGAAGAAGTCATCGAGTCAAGCGCCATGGCTGATGGGGTCA TTTCAATAAAGCTAGCCATACATGACAGCAACCAAGGGGATGGAGCTCTCTATCGGCTGAAGAAAAACTCGCTGGTGCATGTGCATCCGGGTGCATCGCTTCTGGGACGCCGGGTTGCGCTTTACTGCAACTACCCAGCGGATGATAAGGAGTTTTGCCGAAAGACCTACAGACGACTGGAATGGTGTTCGGCAGCGGGGTCACCGTTGGAAACGAGCGCGAGCGGATCCGATTACACCTCCATCAAGGATGTGGATTATTATTGCAATGTCCACTTTACCAAATCGGGAGCGTATCACTTTTATGCCTTGTACGAAGAGTGTCCCGAGGCGGGGGCACAGGCTGGCCTGTACGTACAAATTGAGCCGCAGCTGTCGGTTGGATCGGGAGAGGCCGCCACAACGCTGCCCCTCGATGCCATCCGCTGTCAGACGGTGATTTCGAAGCTGCTCGGACCGTTGGACACGTGGGAGGCAAAGTTGCGCGTGGGCAAGGAGTCGGGCTACAACATGATTCACTTTACGCCCGTGCAAGAGCTGGGCGGATCGCGCTCCGCCTACTCGCTGCGCAACCAGCTCAAGGTGAATCCGGACTTC] [+] EMBL BM598256 [ cCGGTCGGTTAAAGTTGTGGAAAAAGAGTGCCATCGAAGAAGTCATCGAGTCAAGCGCCATGGCTGATGGGGTCATTTTCAATAAAGCT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7625#0 CCGGCTCGATCATTGCATAGTATGTCCCTGCCGAGAAGACTGTCCAGTGCTTTCACACCG 60 consensus_7625#1 ---------------CCGAACAAAACTGATCAACAGCGGTCGGTTAAAGTTGTGGAAAAA 45 * * * * * * * * * * * * consensus_7625#0 CTGAGTGCCATCGAAGAAGTCATCGAGTCAAGCGCCATGGCTGATGGGGTCATTTCAATA 120 consensus_7625#1 --GAGTGCCATCGAAGAAGTCATCGAGTCAAGCGCCATGGCTGATGGGGTCATTTCAATA 103 ********************************************************** consensus_7625#0 AAGCTAGCCATACATGACAGCAACCAAGGGGATGGAGCTCTCTATCGACTGAAGAAAAAC 180 consensus_7625#1 AAGCTAGCCATACATGACAGCAACCAAGGGGATGGAGCTCTCTATCGACTGAAGAAAAAC 163 ************************************************************ consensus_7625#0 TCGCTGGTGCATGTGCATCCGGGTGCATCGCTTCTGGGACGCCGGGTTGCGCTTTACTGC 240 consensus_7625#1 TCGCTGGTGCATGTGCATCCGGGTGCATCGCTTCTGGGACGCCGGGTTGCGCTTTACTGC 223 ************************************************************ consensus_7625#0 AACTACCCAGCGGATGATAAGGAGTTTTGCCGAAAGACCTACAGACGCCTAGAATGGTGT 300 consensus_7625#1 AACTACCCAGCGGATGATAAGGAGTTTTGCCGAAAGACCTACAGACGCCTAGAATGGTGT 283 ************************************************************ consensus_7625#0 TCGGCAGCGGGATCACCGTTGGAAACGAGCGCGAGCGGATCCGAATACACCTCCATCAAG 360 consensus_7625#1 TCGGCAGCGGGATCACCGTTGGAAACGAGCGCGAGCGGATCCGAATACACCTCCATCAAG 343 ************************************************************ consensus_7625#0 GACGTGGATTATTATTGCAATGTTCACTTTACCAAATCGGGAGCGTATCACTTTTATGCC 420 consensus_7625#1 GACGTGGATTATTATTGCAATGTTCACTTTACCAAATCGGGAGCGTATCACTTTTATGCC 403 ************************************************************ consensus_7625#0 TTGTACGAAGAGTGTCCCGAGGCGGGGGCACAGGCTGGCCTGTACGTACAAATTGAGCCG 480 consensus_7625#1 TTGTACGAAGAGTGTCCCGAGGCGGGGGCACAGGCTGGCCTGTACGTACAAATTGAGCCG 463 ************************************************************ consensus_7625#0 CAGCTGTCGGTTGGATCGGGAGAGGCCGCCACAACGCTGCCCCTCGATGCCATCCGCTGT 540 consensus_7625#1 CAGCTGTCGGTTGGATCGGGAGAGGCCGCCACAACGCTGCCCCTCGATGCCATCCGCTGT 523 ************************************************************ consensus_7625#0 CAGACGGTGATTTCGAAGCTGCTCGGACCGTTGGACACGTGGGAGGCAAAGTTGCGCGTG 600 consensus_7625#1 CAGACGGTGATTTCGAAGCTGCTCGGACCGTTGGACACGTGGGAGGCAAAGTTGCGCGTG 583 ************************************************************ consensus_7625#0 GGCAAGGAGTCGGGCTACAACATGGTTCACTTTACGCCCGTGCAAGAGCTGGGCGGATCG 660 consensus_7625#1 GGCAAGGAGTCGGGCTACAACATGGTTCACTTTACGCCCGTGCAAGAGCTGGGCGGATCG 643 ************************************************************ consensus_7625#0 CGCTCCGCCTACTCGCTGCGCAACCAGCTCAAGGTGAATCCGGACTTCCAGAACAAGGGC 720 consensus_7625#1 CGCTCCGCCTACTCGCTGCGCAACCAGCTCAAGGTGAATCCGGACTTC------------ 691 ************************************************ consensus_7625#0 GGCAAGGAGGTGAGCTATGACGATTTGGCCGTTTTAATGCGCAAAATGCGCGAAGAGTGG 780 consensus_7625#1 ------------------------------------------------------------ consensus_7625#0 AACGTTGCATCGATTTGTGACATTGTGCTGAACCACACGGCCAACGAGTCGATCTGGATT 840 consensus_7625#1 ------------------------------------------------------------ consensus_7625#0 CGGGAGTATCCGGAGTGCAGCTACAATTGCTTCACCTGTCCGCATCTGCGGCCGGCCTTC 900 consensus_7625#1 ------------------------------------------------------------ consensus_7625#0 CTGCTCGACGCAATGCTGGCCCGTGTCGGAGAGGACGTGAAGGACGGTATGCTGGCGCAC 960 consensus_7625#1 ------------------------------------------------------------ consensus_7625#0 GTTGGCGTGCCGGAGGTGGTCGAAACGGAGGATCATCTGCAGGCCATTCGTTGGCAGATC 1020 consensus_7625#1 ------------------------------------------------------------ consensus_7625#0 CATTCGAACTACTTGCCGCAGGTGAAGCTGTACGAGCTGTACCAGTGCGATGTGGACAAG 1080 consensus_7625#1 ------------------------------------------------------------ consensus_7625#0 TACGTGTCGCGGTTCAACGACGAGTGCAGCAAACGCAGCCCCAGCCGTGCGCAGGATATT 1140 consensus_7625#1 ------------------------------------------------------------ consensus_7625#0 CCCGAGGGCGATATAAAGCTGCGGATGGACCCGGAGCATCGCCGACTGGGTGCAGAGATC 1200 consensus_7625#1 ------------------------------------------------------------ consensus_7625#0 GACTTCGAACGTGCCATGAGCATCTACAACGTGTTCCGGCAGGACTGTTTCGATGAGGAC 1260 consensus_7625#1 ------------------------------------------------------------ consensus_7625#0 AGTCGTAAGCGCAAGTGCACCGAGGTGTTCCGCGCTCGGTTGCAGTTCCTGAATGAAGAG 1320 consensus_7625#1 ------------------------------------------------------------ consensus_7625#0 GTGCGCCGGGAAATACAGGAACATCTGGACTACGCCATCGACAACTGTCTGGCCGGCACA 1380 consensus_7625#1 ------------------------------------------------------------ consensus_7625#0 CGCTATGAACGTGTGCAGGGCGATGGACCCCAGGTGAAGGGCATATCGGTGAAGTACCCG 1440 consensus_7625#1 ------------------------------------------------------------ consensus_7625#0 CTGTTCATGAAGTACTTTACGCACTACGGAACGCAGGGTAAATCGCTCAAGGACATCG 1498 consensus_7625#1 ---------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||