These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7626#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1151 fasta sequence [CCGCCCACGCGTCCGGGAAATGCTGGCTTGAAGGATCAGCGCTTAGCACTTCAGTGGATTCGTCAGAACGTCAGCACATTTGGTGGTGATCCGAACAATGTCACACTGTTCGGTGCAAGCTCCGGTGGCAGCAACGTTCTGATGCATTGCTTTTCCGATCTCTCACAACCGTACTTCCACAAGGCGATCGCCCAGAGCGCCACCATCTTTGCGGATCTAATCTACCAAACGGAGCCGGAAGAGCGGGCCCGCTCGCTGGCACGCATCTTCGGCTACGAGGGCACCTCGGATGAGGGCGTCCTCGCGACGCTACGGGACGTCCCGGCGAGGCGTCTGTACGAAGCTCAGTTCTTGGTGCTTTCCGATCGCGAGCGTGAGTACGAACAGATCTTCCAGTTTCCCTTCACGGCCGTCATCGAGCGGGAACAGTCGACCGATCCGGTGCTGGTGAAAACGCCCATGGAATATCTGCGCGAGCCGAATCGAATGCGCGTGCCGGTGCTGTGTGGGTACAACGATAAGGAGGGCATGCTGGAGCTGGTGGATATGATCAAGAACCTGTCGGTGTACAACGCACGGCCGGAGAAGTTTATCTGCCGCTCGTTCGACGTCGATTACTTTAGTTCGGCCGCACGGGCACTGGGTGAAGAGATGAGGCGGCATTACTTTGGCGAAGCGTCGATTAGTCGTGCCAACCTGGACCGATTGGTCGATCTGCTTACCGATCGGTTCGTGGTCGGGTACTATGTGCTGTGCAAGCTGTGGAGCGAACATCAGCCAGCGACACCACTGTACTCGTACCGCTTCGCTTACGAGGGATCGCTCAACAAGGGCAAGGAGTTGCTCAAGTTTCAACACCTACCGGGCGCGTGTCATATCGATGAGGTGTACTACCTGTTCAGCTCACCGCTGCTGCGCACGGAGATCCCACCGTCCGATCCGGCTTACCGTATGCGGCAGCTAATGGTACGCATGTGGACAAACTTTGCAAAGCACTCGAACCCAACGCCACCGACGGAGCATGAACCCGGTCTTCCATGCCAGTGGGAACCGATGCGAGCGGTCCCGGGGACGGATGGACAGCCGACAAACTATACCGTGTTTTCGATAGGCAAGGAGCTAACGATGAGTACGCTGCCGGAGCTGGAGCG] [+] EMBL BM608307 [CCGCCCACGCGTCCGGGAAATGCTGGCTTGAAGGATCAGCGCTTAGCACTTCAGTGGATTCGTCAGAACGTCAGCACATTTGGTGGTGATCCGAACAATGTCACACTGTTCGGTGCAAGCTCCGGTGGCAGCAACGTTCTGATGCATTGCTTTTCCGATCTCTCACAACCGTACTTCCACAAGGCGATCGCCCAGAGCGCCACCATCTTTGCGGATCTAATCTACCAAACGGAGCCGGAAGAGCGGGC ] [+] EMBL BX607367 [ CAGCGCTTAGCACTTCAGTGGATCCGTCAGAACGTCAGCACATTTGGTGGCGATCCAAACAATGTCACACTGTTCGGTGCAAGCTCCGGTGGCAGCAACGTCCTGATGCATTGCTTTTCCGATCTCTCGCAACCGTACTTCCACAAGGCGATCGCCCAGAGCGCCACCATCTTTGCGGATCTAATCTACCAAACGGAGCCGGAAGAGCGGGCCCGCTCGCTGGCACGCATCTTCGGCTACGAGGGCACCTCGGATGAGGGCGTCCTCGCGACGCTACGGGACGTCCCGGCGAGGCGTCTGTACGAAGCTCAGTTCTTGGTGCTTTCCGATCGCGAGCGTGAGTACGAACAGATCTTCCAGTTTCCCTTCACGGCCGTCATCGAGCGGGAACAGTCGACCGATCCGGTGCTGGTGAAAACGCCCATGGAATATCTGCGCGAGCCGAATCGAATGCGCGTGCCGGTGCTGTGTGGGTACAACGATAAGGAGGGCATGCTGGAGCTGGTGGATATGATCAAGAACCTGTCGGTGTACAACGCACGGCCGGAGAAGTTTATCTGCCGCTCGTTCGACGTCGATTACTTTAGTTCGGCCGCACGGGCACTGGGTGAAGAGATGAGGCGGCATTACTTTGGCGAAGCGTCGATTAGTCGTGCCAACCTGGACCGATTGGTCGATCTGCTTACCGATCGGTTCGTGGTCGGGTACTATGTGCTGTGCAAGCTGTGGAGCGAACATCAGCCAGCGACACCACTGTACTCGTACCGCTTCGCTTACGAGGGATCGCTCAACAAGGG ] [+] EMBL BX605515 [ ACCGTACTTCCACAAGGCGATCGCCCAGAGCGCTACCATCTTTGCGGATCTAATCTACCAAACGGAGCCGGAAGAGCGGGCCCGCTCGCTGGCACGTATCTTCGGCTACGAGGGCACCTCGGATGAGGGCGTCCTCGCGACGCTACGGGACGTCCCGGCAAGGCGTCTGTACGAAGCTCAGTTCCTGGTGCTTTCCGATCGCGAGCGCGAGTACGAACAGATCTTCCAGTTTCCCTTCACGGCCGTCATCGAGCGGGAACAGTCGACCGATCCGGTGCTGGTGAAAACGCCCATGGAATATCTGCGCGAGCCGAATCGAATGCGCGTGCCGGTGCTGTGTGGGTACAACGATAAGGAGGGCATGCTGGAGCTGGTGGATATGATAAAGAACCTGTCGGTGTACAACGCACGGCCGGAGAAGTTTATCTGCCGCTCGTTCGATGTCGATTACTTTAGTCCGGCCGCACGGGCGCTGGGTGAAGAGATGAGGCGGCATTACTTTGGCGAAGCGTCGATTAGTCGTGCCAACCTGGACCGATTGGTCGATCTGCTTACCGATCGGTTCGTGGTCGGGTACTATGTGCTGTGCAAGCTGTGGAGCGAACATCAGACAGCGACACCACTGTACTCGTAC ] [+] EMBL BX606467 [ CACCATCTTTGCGGATCTAATCTACCAAACGGAGCCGGAAGAGCGGGCCCGCTCGCTGGCACGCATCTTCGGCTACGAGGGCACCTCGGATGAGGGCGTCCTCGCGACGCTACGGGACGTCCCGGCGAGGCGTCTGTACGAAGCTCAGTTCTTGGTGCTTTCCGATCGCGAGCGTGAGTACGAACAGATCTTCCAGTTTCCCTTCACGGCCGTCATCGAGCGGGAACAGTCGACCGATCCGGTGCTGGTGAAAACGCCCATGGAATATCTGCGCGAGCCGAATCGAATGCGCGTGCCGGTGCTGTGTGGGTACAACGATAAGGAGGGCATGCTG ] [+] EMBL BX603175 [ GAAGCTCAGTTCTTGGTGCTTTCCGATCGCGAGCGTGAGTACGAACAGATCTTCCAGTTTCCCTTCACGGCCGTCATCGAGCGGGAACAGTCGACCGATCCGGTGCTGGTGAAAACGCCCATGGAATATCTGCGCGAGCCGAATCGAATGCGCGTGCCGGTGCTGTGTGGGTACAACGATAAGGAGGGCATGCTGGAGCTGGTGGATATGATCAAGAACCTGTCGGTGTACAACGCACGGCCGGAGAAGTTTATCTGCCGCTCGTTCGACGTCGATTACTTTAGTTCGGCCGCACGGGCACTGGGTGAAGAGATGAGGCGGCATTACTTTGGCGAAGCGTCGATTAGTCGTGCCAACCTGGACCGATTGGTCGATCTGCTTACCGATCGGTTCGTGGTCGGGTACTATGTGCTGTGCAAGCTGTGGAGCGAACATCAGCCAGCGACACCACTGTACTCGTACCGCTTCGCTTACGAGGGATCGCT ] [+] EMBL BX628784 [ ATCCGGTGCTGGTGAAAACGCCCATGGAATATCTGCGCGAGCCGAATCGAATGCGCGTGCCGGTGCTGTGTGGGTACAACGATAAGGAGGGCATGCTGGAGCTGGTGGATATGATCAAGAACCTGTCGGTGTACAACGCACGGCCGGAGAAGTTTATCTGCCGCTCGTTCGACGTCGATTACTTTAGTTCGGCCGCACGGGCACTGGGTGAAGAGATGAGGCGGCATTACTTTGGCGAAGCGTCGATTAGTCGTGCCAACCTGGACCGATTGGTCGATCTGCTTACCGATCGGTTCGTGGTCGGGTACTATGTGCTGTGCAAGCTGTGGAGCGAACATCAGCCAGCGACACCACTGTACTCGTACCGCTTCGCTTACGAGGGATCGCTCAACAAGGGCAAGGAGTTGCTCAAGTTTCAACACCTACCGGGCGCGTGTCATATCGATGAGGTGTACTACCTGTTCAGCTCACCGCTGCTGCGCACGGAGATCCCACCGTCCGATCCGGCTTACCGTATGCGGCAGCTAATGGTACGCATGTGGACAAACTTTGCAAAGCACTCGAACCCAACGCCACCGACGGAGCATGAACCCGGTCTTCCATGCCAGTGGGAACCGATGCGAGCGGTCCCGGGGACGGATGGACAGCCGACAAACTATACCGTGTTTTCGATAGGCAAGGAGCTAACGATGAGTACGCTGCCGGAGCTGGAGCG] consensusID : consensus_7626#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence [CCGCCCACGCGTCCGACTATGTGCTGTGCAAGCTGTGGAGCGAACATCAGACAGCGACACCACTGTACTCGTACCGCTTCGCTTACGAGGGATCGCTCAACAAGGGCAAGGAGTTGCTCAAGTTTCAACACCTACCGGGCGCGTGTCATATCGATGAGGTGTACTATCTGTTCAGCTCACCGCTGCTGCGCACGGAGATCCCACCGTCCGATCCGGCTTACCGCATGCGGCAGCTAATGGTACGCATGTGGACAAACTTTGCAAAGCACTCGAACCCAACGCCACCGACGGAGGATGAACCCGGTCTTCCATGCCAGTGGGAACCGATGCGAACGGTCCCGGGGACGGAGGGACAGCCGACAAACTATACCGTGTTTTCGATAGGCAAGGAGCTAACGATGAGTACGCTGCCGGAGCTGGAGCGAATGGGCAAGTTCTTGGAGGTGACAAAACGGTGCAACGGTACGATCGATAACTTCGTCATACCGCGCATCGATTCTCGGCCAACAACCGGTGGGCGGGAAAGGCAGCAGTCGTTTGGTTAATGTTTGATTAATTTTGTACCGCGTTTGGACTTCCGCAATTGAAATGGTGTAATAAATTTATAATTAATACACAGTTCGTGGCCCGATGTGATGCAGTGGTTCA] [+] EMBL BM653567 [CCGCCCACGCGTCCGACTATGTGCTGTGCAAGCTGTGGAGCGAACATCAGACAGCGACACCACTGTACTCGTACCGCTTCGCTTACGAGGGATCGCTCAACAAGGGCAAGGAGTTGCTCAAGTTTCAACACCTACCGGGCGCGTGTCATATCGATGAGGTGTACTATCTGTTCAGCTCACCGCTGCTGCGCACGGAGATCCCACCGTCCGATCCGGCTTACCGCATGCGGCAGCTAATGGTACGCATGTGGACAAACTTTGCAAAGCACTCGAACCCAACGCCACCGACGGAGGATGAACCCGGTCTTCCATGCCAGTGGGAACCGATGCGAACGGTCCCGGGGACGGAGGGACAGCCGACAAACTATACCGTGTTTTCGATAGGCAAGGAGCTAACGATGAGTACGCTGCCGGAGCTGGAGCGAATGGGCAAGTTCTTGGAGGTGACAAAACGGTGCAACGGTACGATCGATAACTTCGTCATACCGCGCATCGATTCTCGGCCAACAACCGGTGGGCGGGAAAGGCAGCAGTCGTTTGGTTAATGTTTGATTAATTTTGTACCGCGTTTGGACTTCCGCAATTGAAATGGTGTAATAAATTTATAATTAATACACAGTTCGTGGCCCGATGTGATGCAGTGGTTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7626#0 CCGCCCACGCGTCCGGGAAATGCTGGCTTGAAGGATCAGCGCTTAGCACTTCAGTGGATT 60 consensus_7626#1 ------------------------------------------------------------ consensus_7626#0 CGTCAGAACGTCAGCACATTTGGTGGTGATCCGAACAATGTCACACTGTTCGGTGCAAGC 120 consensus_7626#1 ------------------------------------------------------------ consensus_7626#0 TCCGGTGGCAGCAACGTTCTGATGCATTGCTTTTCCGATCTCTCACAACCGTACTTCCAC 180 consensus_7626#1 ------------------------------------------------------------ consensus_7626#0 AAGGCGATCGCCCAGAGCGCCACCATCTTTGCGGATCTAATCTACCAAACGGAGCCGGAA 240 consensus_7626#1 ------------------------------------------------------------ consensus_7626#0 GAGCGGGCCCGCTCGCTGGCACGCATCTTCGGCTACGAGGGCACCTCGGATGAGGGCGTC 300 consensus_7626#1 ------------------------------------------------------------ consensus_7626#0 CTCGCGACGCTACGGGACGTCCCGGCGAGGCGTCTGTACGAAGCTCAGTTCTTGGTGCTT 360 consensus_7626#1 ------------------------------------------------------------ consensus_7626#0 TCCGATCGCGAGCGTGAGTACGAACAGATCTTCCAGTTTCCCTTCACGGCCGTCATCGAG 420 consensus_7626#1 ------------------------------------------------------------ consensus_7626#0 CGGGAACAGTCGACCGATCCGGTGCTGGTGAAAACGCCCATGGAATATCTGCGCGAGCCG 480 consensus_7626#1 ------------------------------------------------------------ consensus_7626#0 AATCGAATGCGCGTGCCGGTGCTGTGTGGGTACAACGATAAGGAGGGCATGCTGGAGCTG 540 consensus_7626#1 ------------------------------------------------------------ consensus_7626#0 GTGGATATGATCAAGAACCTGTCGGTGTACAACGCACGGCCGGAGAAGTTTATCTGCCGC 600 consensus_7626#1 ------------------------------------------------------------ consensus_7626#0 TCGTTCGACGTCGATTACTTTAGTTCGGCCGCACGGGCACTGGGTGAAGAGATGAGGCGG 660 consensus_7626#1 ------------------------------------------------------------ consensus_7626#0 CATTACTTTGGCGAAGCGTCGATTAGTCGTGCCAACCTGGACCGATTGGTCGATCTGCTT 720 consensus_7626#1 ------------------------------------------------------------ consensus_7626#0 ACCGATCGGTTCGTG-GTCGGGTACTATGTGCTGTGCAAGCTGTGGAGCGAACATCAGCC 779 consensus_7626#1 ------CCGCCCACGCGTCCG--ACTATGTGCTGTGCAAGCTGTGGAGCGAACATCAGAC 52 * * * * *** * *********************************** * consensus_7626#0 AGCGACACCACTGTACTCGTACCGCTTCGCTTACGAGGGATCGCTCAACAAGGGCAAGGA 839 consensus_7626#1 AGCGACACCACTGTACTCGTACCGCTTCGCTTACGAGGGATCGCTCAACAAGGGCAAGGA 112 ************************************************************ consensus_7626#0 GTTGCTCAAGTTTCAACACCTACCGGGCGCGTGTCATATCGATGAGGTGTACTACCTGTT 899 consensus_7626#1 GTTGCTCAAGTTTCAACACCTACCGGGCGCGTGTCATATCGATGAGGTGTACTATCTGTT 172 ****************************************************** ***** consensus_7626#0 CAGCTCACCGCTGCTGCGCACGGAGATCCCACCGTCCGATCCGGCTTACCGTATGCGGCA 959 consensus_7626#1 CAGCTCACCGCTGCTGCGCACGGAGATCCCACCGTCCGATCCGGCTTACCGCATGCGGCA 232 *************************************************** ******** consensus_7626#0 GCTAATGGTACGCATGTGGACAAACTTTGCAAAGCACTCGAACCCAACGCCACCGACGGA 1019 consensus_7626#1 GCTAATGGTACGCATGTGGACAAACTTTGCAAAGCACTCGAACCCAACGCCACCGACGGA 292 ************************************************************ consensus_7626#0 GCATGAACCCGGTCTTCCATGCCAGTGGGAACCGATGCGAGCGGTCCCGGGGACGGATGG 1079 consensus_7626#1 GGATGAACCCGGTCTTCCATGCCAGTGGGAACCGATGCGAACGGTCCCGGGGACGGAGGG 352 * ************************************** **************** ** consensus_7626#0 ACAGCCGACAAACTATACCGTGTTTTCGATAGGCAAGGAGCTAACGATGAGTACGCTGCC 1139 consensus_7626#1 ACAGCCGACAAACTATACCGTGTTTTCGATAGGCAAGGAGCTAACGATGAGTACGCTGCC 412 ************************************************************ consensus_7626#0 GGAGCTGGAGCG------------------------------------------------ 1151 consensus_7626#1 GGAGCTGGAGCGAATGGGCAAGTTCTTGGAGGTGACAAAACGGTGCAACGGTACGATCGA 472 ************ consensus_7626#0 ------------------------------------------------------------ consensus_7626#1 TAACTTCGTCATACCGCGCATCGATTCTCGGCCAACAACCGGTGGGCGGGAAAGGCAGCA 532 consensus_7626#0 ------------------------------------------------------------ consensus_7626#1 GTCGTTTGGTTAATGTTTGATTAATTTTGTACCGCGTTTGGACTTCCGCAATTGAAATGG 592 consensus_7626#0 -------------------------------------------------------- consensus_7626#1 TGTAATAAATTTATAATTAATACACAGTTCGTGGCCCGATGTGATGCAGTGGTTCA 648 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||