These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7627#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 889 fasta sequence [ATCGCCCGAGGTTTTTTTTCTGCACTCTCTCCCTCCCCAACAGAAGAAAGATATGCTGTTGTGTTGCGGCCGCAAAAGCAAATGAAAAGTTGAACTGAAACTTCCAAGCGCACAAAGTCGAGCCGTGAGGTGTTTTCCTTGTTTTTC-CGTGTTCGAGTGTGTGTGTGGTGGTTCTGTGTTTCGTACGTGTGCGGTGCGCGTTTGTGTTGGAGGTGTTTCGGTTTGTATTTTCTTCGTGTTTCCAGTTTGTTTTTCCTAGGTTTCGCTAAAAGATGTCATCCGGAAGACCTATCAAATGTGTGGTGGTCGG-CG-ACGGCACGGTGGGGAAGACGTGCATGTTGATCAGCTACACGACCGACAGCTTTCCCGGCGAATACGTACCCACGGTCTTCGACAACTACTCCGCCCCGATGGTGGTGGACGGTGTGCAAGTGTCGCTCGGGCTGTGGGATACGGCCGGGCAGGAAGACTACGATCGGCTAAGGCCCCTGTCCTACCCACAGACGGACGTGTTCCTCATATGCTACAGTGTGGCCAGCCCGTCGTCGTTCGAAAACGTTACCTCCAAATGGTATCCCGAGATCAAGCACCACTGCCCGGATGCGCCCATCATTTTAGTCGGAACCAAAATCGATCTGCGCGAGGATCGGGAAACGATAAGCTTGCTGGCGGACCAGGGCCTTTCCGCGCTGAAGCGCGAACAGGGCCAAAAGCTAGCGAACAAGATACGGGCGGTCAAGTATATGGAATGTTCGGCACTAACCCAGCGGGGCCTAAAGCAGGTGTTTGACGAAGCGGTGCGGGCCGTCCTCAGACCGGAGCCTTTGAAACGACGCCAACGAAAATGTGTTGTGATGTAGTGTGTGCTTGTGTGCATGTGTCCGCGTGG] [+] EMBL AL693526 [ATCGCCCGAGGTTTTTTTTCTGCACTCTCTCCCTCCCCAACAGAAGAAAGATATGCTGTTGTGTTGCGGCCGCAAAAGCAAATGAAAAGTTGAACTGAAACTTCCAAGCGCACAAAGTCGAGCCGTGAGGTGTTTTCCTTGTTTTTC CGTGTTCGAGTGTGTGTGTGGTGGTTCTGTGTTTCGTACGTGTGCGGTGCGCGTTTGTGTTGGAGGTGTTTCGGTTTGTATTTTCTTCGTGTTTCCAGTTTGTTTTTCCTAGGTTTCGCTAAAAGATGTCATCCGGAAGACCTATCAAATGTGTGGTGGTCGGCCGAACGGCACGGTGGGGAAGACGTGCATGTTGATCAGCTACACGACCGACAGCTTTCCCGGCGAATACGT ] [+] EMBL BM614897 [ CCGCAAAAGCAAATGAAAAGTTGAACTGAAACTTCCAAGCGCACAAAGTCGAGCCGTGAGGTGTTTTCCTTGTTTTTCGTGTGTGTGCGAGTGTGTGTGGTGGTTCTGTGTTTCGTACGTGTGCGGTGCGCGTTTGTGTTGGAGGTGTTTCGGTTTTTATTTTCTTCGTGTTTCCAGTTTGTTTTTCCTAGGTTTCGCTAAAAGATTTCATCCGGAAGACCTATCAAATGTGTGGTGGTCGG CG ACGGCACGGTGGGGAAGACGTGCATGTTGATCAGCTACACGACCGACAGCTTTCCCGGCGAATACGTACCCACGGTCTTCGACAACTACTCCGCCCCGATGGTGGTGGACGGTGTGCAAGTGTCGCTCGGGCTGTGGGATACGGCCGGGCAGGAAGACTACGATCGGCTAAGGCCCCTGTCCTACCCACAGACGGACGTGTTCCTCATATGCTACAGTGTGGCCAGCCCGTCGTCGTTCGAAAACGTTACCTCCAAATGGTATCCCGAGATCAAGCACCACTGCCCGGATGCGCCCATCATTTTAGTCGGAACCAAAATCGATCTGCGCGAGGATCGGGAAACGATAAGCTTGCTGGCGGACCAGGGCCTTTCCGCGCTGAAGCGCGAACAGGGCCAAAAGCTAGCGAACAAGATACGG ] [+] EMBL BX622171 [ TGAACTGAAACTTCCAAGCGCATAAAGTCGAGCCGTGAGGAGTTTTCCTTGTTTTTC CGTGTTCGAGTGTGTGTGTGGTGGTTCTGTGTTTCGTACGTGTGCGGTGCGCGTTTGTGTTGGAGGTGTTTCGGTTTTTATTTTCTTCGTGTTTCCAGTTTGTTTTTCCTAGGTTTCGCTAAAAGATGTCATCCGGAAGACCTATCAAATGTGTGGTGGTCGG CG ACGGCACGGTGGGGAAGACGTGCATGTTGATCAGCTACACGACCGACAGCTTTCCCGGCGAATACGTACCCACGGTCTTCGACAACTACTCCGCCCCGATGGTGGTGGACGGTGTGCAAGTGTCGCTCGGGCTGTGGGATACGGCCGGGCAGGAAGACTACGATCGACTAAGGCCCCTGTCCTACCCACAGACGGACGTGTTCCTCATATGCTACAGTGTGGCCAGCCCGTCGTCGTTCGAAAACGTTACCTCCAAATGGTATCCCGAGATCAAGCACCACTGCCCGGATGCGCCCATCATTTTAGTCGGAACCAAAATCGATCTGCGCGAGGATCGGGAAACGATAAGCTTGCTGGCGGACCAGGGCCTTTCCGCGCTGAAGCGCGAACAGGGCCAAAAGCTAGCGAACAAGATACGGGCGGTCAAGTATATGGAATGTTCGGCACTAA ] [+] EMBL AGA280243 [ TTTTC CGTGTTCGAGTGTGTGTGTGGTGGTTCTGTGTTTCGTACGTGTGCGGTGCGCGTTTGTGTTGGAGGTGTTTCGGTTTGTATTTTCTTCGTGTTTCCAGTTTGTTTTTCCTAGGTTTCGCTAAAAGATGTCATCCGGAAGACCTATCAAATGTGTGGTGGTCGG CG ACGGCACGGTGGGGAAGACGTGCATGTTGATCAGCTACACGACCGACAGCTTTTCCGGCGAATACGTACCCACGGTCTTC ] [-] EMBL AGA281939 [ GTATCCCGAAATCAGGCACCACTGCCCGGATGCGCCCATCATTTTAGTCGGAACCAAAATCGATCTGCGCGAGGATCGGGAAACGATAAGCTTGCTGGCGGACCAGGGCCTTTCCGCGCTGAAGCGCGAACAGGGCCAAAAGCTAGCGAACAAGATACGGGCGGTAAAGTATATGGAATGTTCGGCACTAACCCAGCGGGGCCTAAAGCAGGTGTTTGACGAAGCGGTGCGGGCCGTCCTCAGACCGGAGCCTTTGAAACGACGCCAACGAAAATGTGTTGTGATGTAGTGTGTGCTTGTGTGCATGTGTCCGCGTGG] consensusID : consensus_7627#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence [CCCAGGGTTAAATATGCTGTTGTGTTGCGGCCGCAAAGCAATGATAAGTTGAACTGAAACTTCCAAGCGCACAAAGTCGAGCCGTGAGGTGTTTTCCTTGTTTTTCCGTGTTCGAGTGTGTGTGTGGTGGTTCTGTGTTTCGTACGTGTGCGGTGCGCGTTTGTGTTGGAGGTGTTNTCGGTATATGTATTTTCTATACGTGGTATTCCAGGTATATGGTTTNTTCCTANCGTTTCGCTAAACAGATGTCATCCGGAAGACCTATCAAATGTGTGGCTGGTCGCGCGCACGGCACGCGTGGGCGAAGACGTGCACTGTNGNATCACGCTACACGACCGACACGCTTTCCCGGCCGAACTACGCTACCCCACGGNTCTCTCGACAACTACTCCGGCCCCNNCTGGTGCGTGCGCCGCGCTGCTGCCACACGCTGGTCGCTCGGGNCTGCTGCGGCACTCACCGCGCCCGGGCCNCGACACGACCTACGGAATCCGNGGGTAAAGAGGCCCCCCTGCGTTCCCTAACGCCCAACCACGACACGGAACAGGTTGGTATACCCTCCATAACTGCTTACAACGTGGTGAGCGCAGCCCCGGTCCGGCTCGTCTCCGAAAANC] [+] EMBL AL695747 [CCCAGGGTTAAATATGCTGTTGTGTTGCGGCCGCAAAGCAATGATAAGTTGAACTGAAACTTCCAAGCGCACAAAGTCGAGCCGTGAGGTGTTTTCCTTGTTTTTCCGTGTTCGAGTGTGTGTGTGGTGGTTCTGTGTTTCGTACGTGTGCGGTGCGCGTTTGTGTTGGAGGTGTTNTCGGTATATGTATTTTCTATACGTGGTATTCCAGGTATATGGTTTNTTCCTANCGTTTCGCTAAACAGATGTCATCCGGAAGACCTATCAAATGTGTGGCTGGTCGCGCGCACGGCACGCGTGGGCGAAGACGTGCACTGTNGNATCACGCTACACGACCGACACGCTTTCCCGGCCGAACTACGCTACCCCACGGNTCTCTCGACAACTACTCCGGCCCCNNCTGGTGCGTGCGCCGCGCTGCTGCCACACGCTGGTCGCTCGGGNCTGCTGCGGCACTCACCGCGCCCGGGCCNCGACACGACCTACGGAATCCGNGGGTAAAGAGGCCCCCCTGCGTTCCCTAACGCCCAACCACGACACGGAACAGGTTGGTATACCCTCCATAACTGCTTACAACGTGGTGAGCGCAGCCCCGGTCCGGCTCGTCTCCGAAAANC] consensusID : consensus_7627#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [TTTTGTGTTGCGNCTGGATGAGCATNCTGAGGTGTTGAACTGGAACTTCCGAAGTGCACAAAGTCGAGCCTGTGACGTGTTGTCCCGTTGGTTNTTTCCAGTGGTTCTGAGTTGTGTGTGTGGGTGCTTCTGGTGGTCTTTCGTACGTGTGCGGATGCGCGTTGTGTNGGNGGTGTTTTCGGTGTCTGGTAATTTACTATCGATGTTGTCCAAGCTTCTGTATTTACCTATGTTNCGGTAAAAGATGTCATCCGGGAAANACCTATCAAATGTGTGGNTGGTCGCGTGGACGGCACGGCTGGGGAAGACGTNTNATGTTGATCAGTGTACCCGACCGAANGTTTCCCGGCGAATACGTACCCACGGTCTTCGACAACTAGTCCGCCCCGTATGGTTGCTGGACGNTGGTG] [+] EMBL AL932085 [TTTTGTGTTGCGNCTGGATGAGCATNCTGAGGTGTTGAACTGGAACTTCCGAAGTGCACAAAGTCGAGCCTGTGACGTGTTGTCCCGTTGGTTNTTTCCAGTGGTTCTGAGTTGTGTGTGTGGGTGCTTCTGGTGGTCTTTCGTACGTGTGCGGATGCGCGTTGTGTNGGNGGTGTTTTCGGTGTCTGGTAATTTACTATCGATGTTGTCCAAGCTTCTGTATTTACCTATGTTNCGGTAAAAGATGTCATCCGGGAAANACCTATCAAATGTGTGGNTGGTCGCGTGGACGGCACGGCTGGGGAAGACGTNTNATGTTGATCAGTGTACCCGACCGAANGTTTCCCGGCGAATACGTACCCACGGTCTTCGACAACTAGTCCGCCCCGTATGGTTGCTGGACGNTGGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7627#0 ATCGCCCGAGGTTTTTTTTCTGCACTCTCTCCCTCCCCAACAGAAGAAAGATATGCTGTT 60 consensus_7627#2 --------------------------------------------------------TTTT 4 consensus_7627#1 ---------------------------------------CCCAGGGTTAAATATGCTGTT 21 * ** consensus_7627#0 GTGTTGCGGCCGCAAAAGCAAA-TGAAAAGTTGAACTGAAACTTCC-AAGCGCACAAAGT 118 consensus_7627#2 GTGTTGCGNCTGGATGAGCATNCTGAGGTGTTGAACTGGAACTTCCGAAGTGCACAAAGT 64 consensus_7627#1 GTGTTGCGGCCGCA-AAGCAA--TGATAAGTTGAACTGAAACTTCC-AAGCGCACAAAGT 77 ******** * * * **** *** ********* ******* *** ********* consensus_7627#0 CGAGCC-GTGAGGTGTTTTCCT-----TGTTTTTCCGTG--TTCGAGT-GTGTGTGTGG- 168 consensus_7627#2 CGAGCCTGTGACGTGTTGTCCCGTTGGTTNTTTCCAGTGGTTCTGAGTTGTGTGTGTGGG 124 consensus_7627#1 CGAGCC-GTGAGGTGTTTTCCT-----TGTTTTTCCGTG--TTCGAGT-GTGTGTGTGG- 127 ****** **** ***** *** * *** * *** * **** ********** consensus_7627#0 TGGTTCTG----TGTTTCGTACGTGTGCGG-TGCGCGTTTGTGTTGGAGGTGTTT-CGGT 222 consensus_7627#2 TGCTTCTGGTGGTCTTTCGTACGTGTGCGGATGCGCGTT-GTGTNGGNGGTGTTTTCGGT 183 consensus_7627#1 TGGTTCTG----TGTTTCGTACGTGTGCGG-TGCGCGTTTGTGTTGGAGGTGTTNTCGGT 182 ** ***** * **************** ******** **** ** ****** **** consensus_7627#0 TTGT----ATTTTCT-T-CG-TGTT-TCCAG---TTTG-TTTTT-CCTAG-GTTTCGCTA 268 consensus_7627#2 GTCTGGTAATTTACTAT-CGATGTTGTCCAAGCTTCTG-TATTTACCTAT-GTTNCGGTA 240 consensus_7627#1 ATATGT--ATTTTCTATACGTGGTATTCCAGGTATATGGTTTNTTCCTANCGTTTCGCTA 240 * * **** ** * ** ** **** * ** * * * **** *** ** ** consensus_7627#0 AA-AGATGTCATCCGG--AAGACCTATCAAATGTGTGGTGGTCGGCG---ACGGCACGG- 321 consensus_7627#2 AA-AGATGTCATCCGGGAAANACCTATCAAATGTGTGGNTGGTCGCGTGGACGGCACGGC 299 consensus_7627#1 AACAGATGTCATCCGG--AAGACCTATCAAATGTGTGGCTGGTCGCGCGCACGGCACGCG 298 ** ************* ** ***************** * *** ******** consensus_7627#0 TGGG-GAAGACGTG-CATGTTGA-TCAGC-TACACGACCGACA-GCTTTCCCGGCGAA-- 374 consensus_7627#2 TGGG-GAAGACGTNTNATGTTGA-TCAGTGTACCCGACCGA-A-NGTTTCCCGGCGAA-- 353 consensus_7627#1 TGGGCGAAGACGTGCACTGTNGNATCACGCTACACGACCGACACGCTTTCCCGGCCGAAC 358 **** ******** *** * *** *** ******* * ********* * consensus_7627#0 TACGTA--CCCACGGTCTTC--GACAACTACTCCG-CCCCG-ATGGTGG-TGGACGGTG- 426 consensus_7627#2 TACGTA--CCCACGGTCTTC--GACAACTAGTCCG-CCCCGTATGGTTGCTGGACGNTGG 408 consensus_7627#1 TACGCTACCCCACGGNTCTCTCGACAACTACTCCGGCCCCNNCTGGTGCGTGCGCCGCGC 418 **** ******* ** ******** **** **** **** ** * * consensus_7627#0 TGCAAGTGT-CGCTCGG-GCTGTGGGATACGGCCGGGCAGGAAGACTACGATCGGCTAAG 484 consensus_7627#2 TG---------------------------------------------------------- 410 consensus_7627#1 TGCTGCCACACGCTGGTCGCTCGGGNCTGCTGCGGCACTCACCGCGCCCGGGCCNCGACA 478 ** consensus_7627#0 GCCCCTGTCCTACCCACAGACGGACGTGTTCCTCATATGCTACAGTGTGGCCAGCC-CGT 543 consensus_7627#2 ------------------------------------------------------------ consensus_7627#1 CGACCTACGGAATCCGNGGGTAAA-GAGGCCCCCCTGCGTTCCCTAACGCCCAACCACGA 537 consensus_7627#0 CGTCGTTCGAAAACGT-TACCTCCAAATGGTATCCCGAGATCAAGCACCACTGCCCGGAT 602 consensus_7627#2 ------------------------------------------------------------ consensus_7627#1 CACGGAACAGGTTGGTATACCCTCCATAACTGCTTACAACGTGGTGAGCGCAGCCCCGGT 597 consensus_7627#0 GCGCCCATCATTTTAGTCGGAACCAAAATCGATCTGCGCGAGGATCGGGAAACGATAAGC 662 consensus_7627#2 ------------------------------------------------------------ consensus_7627#1 CCGGC--TCGTCTCCG--AAAANC------------------------------------ 617 consensus_7627#0 TTGCTGGCGGACCAGGGCCTTTCCGCGCTGAAGCGCGAACAGGGCCAAAAGCTAGCGAAC 722 consensus_7627#2 ------------------------------------------------------------ consensus_7627#1 ------------------------------------------------------------ consensus_7627#0 AAGATACGGGCGGTCAAGTATATGGAATGTTCGGCACTAACCCAGCGGGGCCTAAAGCAG 782 consensus_7627#2 ------------------------------------------------------------ consensus_7627#1 ------------------------------------------------------------ consensus_7627#0 GTGTTTGACGAAGCGGTGCGGGCCGTCCTCAGACCGGAGCCTTTGAAACGACGCCAACGA 842 consensus_7627#2 ------------------------------------------------------------ consensus_7627#1 ------------------------------------------------------------ consensus_7627#0 AAATGTGTTGTGATGTAGTGTGTGCTTGTGTGCATGTGTCCGCGTGG 889 consensus_7627#2 ----------------------------------------------- consensus_7627#1 ----------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||