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Anopheles gambiae
cluster # 7627 cluster # 7627       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7627#0 length = 889 sequences # 5  
consensus_7627#1 length = 617 sequences # 1  
consensus_7627#2 length = 410 sequences # 1  

consensusID : consensus_7627#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 889
fasta sequence
                              [ATCGCCCGAGGTTTTTTTTCTGCACTCTCTCCCTCCCCAACAGAAGAAAGATATGCTGTTGTGTTGCGGCCGCAAAAGCAAATGAAAAGTTGAACTGAAACTTCCAAGCGCACAAAGTCGAGCCGTGAGGTGTTTTCCTTGTTTTTC-CGTGTTCGAGTGTGTGTGTGGTGGTTCTGTGTTTCGTACGTGTGCGGTGCGCGTTTGTGTTGGAGGTGTTTCGGTTTGTATTTTCTTCGTGTTTCCAGTTTGTTTTTCCTAGGTTTCGCTAAAAGATGTCATCCGGAAGACCTATCAAATGTGTGGTGGTCGG-CG-ACGGCACGGTGGGGAAGACGTGCATGTTGATCAGCTACACGACCGACAGCTTTCCCGGCGAATACGTACCCACGGTCTTCGACAACTACTCCGCCCCGATGGTGGTGGACGGTGTGCAAGTGTCGCTCGGGCTGTGGGATACGGCCGGGCAGGAAGACTACGATCGGCTAAGGCCCCTGTCCTACCCACAGACGGACGTGTTCCTCATATGCTACAGTGTGGCCAGCCCGTCGTCGTTCGAAAACGTTACCTCCAAATGGTATCCCGAGATCAAGCACCACTGCCCGGATGCGCCCATCATTTTAGTCGGAACCAAAATCGATCTGCGCGAGGATCGGGAAACGATAAGCTTGCTGGCGGACCAGGGCCTTTCCGCGCTGAAGCGCGAACAGGGCCAAAAGCTAGCGAACAAGATACGGGCGGTCAAGTATATGGAATGTTCGGCACTAACCCAGCGGGGCCTAAAGCAGGTGTTTGACGAAGCGGTGCGGGCCGTCCTCAGACCGGAGCCTTTGAAACGACGCCAACGAAAATGTGTTGTGATGTAGTGTGTGCTTGTGTGCATGTGTCCGCGTGG]

[+] EMBL AL693526             [ATCGCCCGAGGTTTTTTTTCTGCACTCTCTCCCTCCCCAACAGAAGAAAGATATGCTGTTGTGTTGCGGCCGCAAAAGCAAATGAAAAGTTGAACTGAAACTTCCAAGCGCACAAAGTCGAGCCGTGAGGTGTTTTCCTTGTTTTTC CGTGTTCGAGTGTGTGTGTGGTGGTTCTGTGTTTCGTACGTGTGCGGTGCGCGTTTGTGTTGGAGGTGTTTCGGTTTGTATTTTCTTCGTGTTTCCAGTTTGTTTTTCCTAGGTTTCGCTAAAAGATGTCATCCGGAAGACCTATCAAATGTGTGGTGGTCGGCCGAACGGCACGGTGGGGAAGACGTGCATGTTGATCAGCTACACGACCGACAGCTTTCCCGGCGAATACGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BM614897             [                                                                     CCGCAAAAGCAAATGAAAAGTTGAACTGAAACTTCCAAGCGCACAAAGTCGAGCCGTGAGGTGTTTTCCTTGTTTTTCGTGTGTGTGCGAGTGTGTGTGGTGGTTCTGTGTTTCGTACGTGTGCGGTGCGCGTTTGTGTTGGAGGTGTTTCGGTTTTTATTTTCTTCGTGTTTCCAGTTTGTTTTTCCTAGGTTTCGCTAAAAGATTTCATCCGGAAGACCTATCAAATGTGTGGTGGTCGG CG ACGGCACGGTGGGGAAGACGTGCATGTTGATCAGCTACACGACCGACAGCTTTCCCGGCGAATACGTACCCACGGTCTTCGACAACTACTCCGCCCCGATGGTGGTGGACGGTGTGCAAGTGTCGCTCGGGCTGTGGGATACGGCCGGGCAGGAAGACTACGATCGGCTAAGGCCCCTGTCCTACCCACAGACGGACGTGTTCCTCATATGCTACAGTGTGGCCAGCCCGTCGTCGTTCGAAAACGTTACCTCCAAATGGTATCCCGAGATCAAGCACCACTGCCCGGATGCGCCCATCATTTTAGTCGGAACCAAAATCGATCTGCGCGAGGATCGGGAAACGATAAGCTTGCTGGCGGACCAGGGCCTTTCCGCGCTGAAGCGCGAACAGGGCCAAAAGCTAGCGAACAAGATACGG                                                                                                                                                              ]
[+] EMBL BX622171             [                                                                                          TGAACTGAAACTTCCAAGCGCATAAAGTCGAGCCGTGAGGAGTTTTCCTTGTTTTTC CGTGTTCGAGTGTGTGTGTGGTGGTTCTGTGTTTCGTACGTGTGCGGTGCGCGTTTGTGTTGGAGGTGTTTCGGTTTTTATTTTCTTCGTGTTTCCAGTTTGTTTTTCCTAGGTTTCGCTAAAAGATGTCATCCGGAAGACCTATCAAATGTGTGGTGGTCGG CG ACGGCACGGTGGGGAAGACGTGCATGTTGATCAGCTACACGACCGACAGCTTTCCCGGCGAATACGTACCCACGGTCTTCGACAACTACTCCGCCCCGATGGTGGTGGACGGTGTGCAAGTGTCGCTCGGGCTGTGGGATACGGCCGGGCAGGAAGACTACGATCGACTAAGGCCCCTGTCCTACCCACAGACGGACGTGTTCCTCATATGCTACAGTGTGGCCAGCCCGTCGTCGTTCGAAAACGTTACCTCCAAATGGTATCCCGAGATCAAGCACCACTGCCCGGATGCGCCCATCATTTTAGTCGGAACCAAAATCGATCTGCGCGAGGATCGGGAAACGATAAGCTTGCTGGCGGACCAGGGCCTTTCCGCGCTGAAGCGCGAACAGGGCCAAAAGCTAGCGAACAAGATACGGGCGGTCAAGTATATGGAATGTTCGGCACTAA                                                                                                                               ]
[+] EMBL AGA280243            [                                                                                                                                              TTTTC CGTGTTCGAGTGTGTGTGTGGTGGTTCTGTGTTTCGTACGTGTGCGGTGCGCGTTTGTGTTGGAGGTGTTTCGGTTTGTATTTTCTTCGTGTTTCCAGTTTGTTTTTCCTAGGTTTCGCTAAAAGATGTCATCCGGAAGACCTATCAAATGTGTGGTGGTCGG CG ACGGCACGGTGGGGAAGACGTGCATGTTGATCAGCTACACGACCGACAGCTTTTCCGGCGAATACGTACCCACGGTCTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL AGA281939            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GTATCCCGAAATCAGGCACCACTGCCCGGATGCGCCCATCATTTTAGTCGGAACCAAAATCGATCTGCGCGAGGATCGGGAAACGATAAGCTTGCTGGCGGACCAGGGCCTTTCCGCGCTGAAGCGCGAACAGGGCCAAAAGCTAGCGAACAAGATACGGGCGGTAAAGTATATGGAATGTTCGGCACTAACCCAGCGGGGCCTAAAGCAGGTGTTTGACGAAGCGGTGCGGGCCGTCCTCAGACCGGAGCCTTTGAAACGACGCCAACGAAAATGTGTTGTGATGTAGTGTGTGCTTGTGTGCATGTGTCCGCGTGG]


>consensus_7627#0 ATCGCCCGAGGTTTTTTTTCTGCACTCTCTCCCTCCCCAACAGAAGAAAGATATGCTGTT GTGTTGCGGCCGCAAAAGCAAATGAAAAGTTGAACTGAAACTTCCAAGCGCACAAAGTCG AGCCGTGAGGTGTTTTCCTTGTTTTTCCGTGTTCGAGTGTGTGTGTGGTGGTTCTGTGTT TCGTACGTGTGCGGTGCGCGTTTGTGTTGGAGGTGTTTCGGTTTGTATTTTCTTCGTGTT TCCAGTTTGTTTTTCCTAGGTTTCGCTAAAAGATGTCATCCGGAAGACCTATCAAATGTG TGGTGGTCGGCGACGGCACGGTGGGGAAGACGTGCATGTTGATCAGCTACACGACCGACA GCTTTCCCGGCGAATACGTACCCACGGTCTTCGACAACTACTCCGCCCCGATGGTGGTGG ACGGTGTGCAAGTGTCGCTCGGGCTGTGGGATACGGCCGGGCAGGAAGACTACGATCGGC TAAGGCCCCTGTCCTACCCACAGACGGACGTGTTCCTCATATGCTACAGTGTGGCCAGCC CGTCGTCGTTCGAAAACGTTACCTCCAAATGGTATCCCGAGATCAAGCACCACTGCCCGG ATGCGCCCATCATTTTAGTCGGAACCAAAATCGATCTGCGCGAGGATCGGGAAACGATAA GCTTGCTGGCGGACCAGGGCCTTTCCGCGCTGAAGCGCGAACAGGGCCAAAAGCTAGCGA ACAAGATACGGGCGGTCAAGTATATGGAATGTTCGGCACTAACCCAGCGGGGCCTAAAGC AGGTGTTTGACGAAGCGGTGCGGGCCGTCCTCAGACCGGAGCCTTTGAAACGACGCCAAC GAAAATGTGTTGTGATGTAGTGTGTGCTTGTGTGCATGTGTCCGCGTGG



consensusID : consensus_7627#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 617
fasta sequence
                              [CCCAGGGTTAAATATGCTGTTGTGTTGCGGCCGCAAAGCAATGATAAGTTGAACTGAAACTTCCAAGCGCACAAAGTCGAGCCGTGAGGTGTTTTCCTTGTTTTTCCGTGTTCGAGTGTGTGTGTGGTGGTTCTGTGTTTCGTACGTGTGCGGTGCGCGTTTGTGTTGGAGGTGTTNTCGGTATATGTATTTTCTATACGTGGTATTCCAGGTATATGGTTTNTTCCTANCGTTTCGCTAAACAGATGTCATCCGGAAGACCTATCAAATGTGTGGCTGGTCGCGCGCACGGCACGCGTGGGCGAAGACGTGCACTGTNGNATCACGCTACACGACCGACACGCTTTCCCGGCCGAACTACGCTACCCCACGGNTCTCTCGACAACTACTCCGGCCCCNNCTGGTGCGTGCGCCGCGCTGCTGCCACACGCTGGTCGCTCGGGNCTGCTGCGGCACTCACCGCGCCCGGGCCNCGACACGACCTACGGAATCCGNGGGTAAAGAGGCCCCCCTGCGTTCCCTAACGCCCAACCACGACACGGAACAGGTTGGTATACCCTCCATAACTGCTTACAACGTGGTGAGCGCAGCCCCGGTCCGGCTCGTCTCCGAAAANC]

[+] EMBL AL695747             [CCCAGGGTTAAATATGCTGTTGTGTTGCGGCCGCAAAGCAATGATAAGTTGAACTGAAACTTCCAAGCGCACAAAGTCGAGCCGTGAGGTGTTTTCCTTGTTTTTCCGTGTTCGAGTGTGTGTGTGGTGGTTCTGTGTTTCGTACGTGTGCGGTGCGCGTTTGTGTTGGAGGTGTTNTCGGTATATGTATTTTCTATACGTGGTATTCCAGGTATATGGTTTNTTCCTANCGTTTCGCTAAACAGATGTCATCCGGAAGACCTATCAAATGTGTGGCTGGTCGCGCGCACGGCACGCGTGGGCGAAGACGTGCACTGTNGNATCACGCTACACGACCGACACGCTTTCCCGGCCGAACTACGCTACCCCACGGNTCTCTCGACAACTACTCCGGCCCCNNCTGGTGCGTGCGCCGCGCTGCTGCCACACGCTGGTCGCTCGGGNCTGCTGCGGCACTCACCGCGCCCGGGCCNCGACACGACCTACGGAATCCGNGGGTAAAGAGGCCCCCCTGCGTTCCCTAACGCCCAACCACGACACGGAACAGGTTGGTATACCCTCCATAACTGCTTACAACGTGGTGAGCGCAGCCCCGGTCCGGCTCGTCTCCGAAAANC]


>consensus_7627#1 CCCAGGGTTAAATATGCTGTTGTGTTGCGGCCGCAAAGCAATGATAAGTTGAACTGAAAC TTCCAAGCGCACAAAGTCGAGCCGTGAGGTGTTTTCCTTGTTTTTCCGTGTTCGAGTGTG TGTGTGGTGGTTCTGTGTTTCGTACGTGTGCGGTGCGCGTTTGTGTTGGAGGTGTTNTCG GTATATGTATTTTCTATACGTGGTATTCCAGGTATATGGTTTNTTCCTANCGTTTCGCTA AACAGATGTCATCCGGAAGACCTATCAAATGTGTGGCTGGTCGCGCGCACGGCACGCGTG GGCGAAGACGTGCACTGTNGNATCACGCTACACGACCGACACGCTTTCCCGGCCGAACTA CGCTACCCCACGGNTCTCTCGACAACTACTCCGGCCCCNNCTGGTGCGTGCGCCGCGCTG CTGCCACACGCTGGTCGCTCGGGNCTGCTGCGGCACTCACCGCGCCCGGGCCNCGACACG ACCTACGGAATCCGNGGGTAAAGAGGCCCCCCTGCGTTCCCTAACGCCCAACCACGACAC GGAACAGGTTGGTATACCCTCCATAACTGCTTACAACGTGGTGAGCGCAGCCCCGGTCCG GCTCGTCTCCGAAAANC



consensusID : consensus_7627#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 410
fasta sequence
                              [TTTTGTGTTGCGNCTGGATGAGCATNCTGAGGTGTTGAACTGGAACTTCCGAAGTGCACAAAGTCGAGCCTGTGACGTGTTGTCCCGTTGGTTNTTTCCAGTGGTTCTGAGTTGTGTGTGTGGGTGCTTCTGGTGGTCTTTCGTACGTGTGCGGATGCGCGTTGTGTNGGNGGTGTTTTCGGTGTCTGGTAATTTACTATCGATGTTGTCCAAGCTTCTGTATTTACCTATGTTNCGGTAAAAGATGTCATCCGGGAAANACCTATCAAATGTGTGGNTGGTCGCGTGGACGGCACGGCTGGGGAAGACGTNTNATGTTGATCAGTGTACCCGACCGAANGTTTCCCGGCGAATACGTACCCACGGTCTTCGACAACTAGTCCGCCCCGTATGGTTGCTGGACGNTGGTG]

[+] EMBL AL932085             [TTTTGTGTTGCGNCTGGATGAGCATNCTGAGGTGTTGAACTGGAACTTCCGAAGTGCACAAAGTCGAGCCTGTGACGTGTTGTCCCGTTGGTTNTTTCCAGTGGTTCTGAGTTGTGTGTGTGGGTGCTTCTGGTGGTCTTTCGTACGTGTGCGGATGCGCGTTGTGTNGGNGGTGTTTTCGGTGTCTGGTAATTTACTATCGATGTTGTCCAAGCTTCTGTATTTACCTATGTTNCGGTAAAAGATGTCATCCGGGAAANACCTATCAAATGTGTGGNTGGTCGCGTGGACGGCACGGCTGGGGAAGACGTNTNATGTTGATCAGTGTACCCGACCGAANGTTTCCCGGCGAATACGTACCCACGGTCTTCGACAACTAGTCCGCCCCGTATGGTTGCTGGACGNTGGTG]


>consensus_7627#2 TTTTGTGTTGCGNCTGGATGAGCATNCTGAGGTGTTGAACTGGAACTTCCGAAGTGCACA AAGTCGAGCCTGTGACGTGTTGTCCCGTTGGTTNTTTCCAGTGGTTCTGAGTTGTGTGTG TGGGTGCTTCTGGTGGTCTTTCGTACGTGTGCGGATGCGCGTTGTGTNGGNGGTGTTTTC GGTGTCTGGTAATTTACTATCGATGTTGTCCAAGCTTCTGTATTTACCTATGTTNCGGTA AAAGATGTCATCCGGGAAANACCTATCAAATGTGTGGNTGGTCGCGTGGACGGCACGGCT GGGGAAGACGTNTNATGTTGATCAGTGTACCCGACCGAANGTTTCCCGGCGAATACGTAC CCACGGTCTTCGACAACTAGTCCGCCCCGTATGGTTGCTGGACGNTGGTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7627#0      ATCGCCCGAGGTTTTTTTTCTGCACTCTCTCCCTCCCCAACAGAAGAAAGATATGCTGTT 60
consensus_7627#2      --------------------------------------------------------TTTT 4
consensus_7627#1      ---------------------------------------CCCAGGGTTAAATATGCTGTT 21
                                                                              * **

consensus_7627#0      GTGTTGCGGCCGCAAAAGCAAA-TGAAAAGTTGAACTGAAACTTCC-AAGCGCACAAAGT 118
consensus_7627#2      GTGTTGCGNCTGGATGAGCATNCTGAGGTGTTGAACTGGAACTTCCGAAGTGCACAAAGT 64
consensus_7627#1      GTGTTGCGGCCGCA-AAGCAA--TGATAAGTTGAACTGAAACTTCC-AAGCGCACAAAGT 77
                      ******** * * *  ****   ***   ********* ******* *** *********

consensus_7627#0      CGAGCC-GTGAGGTGTTTTCCT-----TGTTTTTCCGTG--TTCGAGT-GTGTGTGTGG- 168
consensus_7627#2      CGAGCCTGTGACGTGTTGTCCCGTTGGTTNTTTCCAGTGGTTCTGAGTTGTGTGTGTGGG 124
consensus_7627#1      CGAGCC-GTGAGGTGTTTTCCT-----TGTTTTTCCGTG--TTCGAGT-GTGTGTGTGG- 127
                      ****** **** ***** ***      *  *** * ***  *  **** ********** 

consensus_7627#0      TGGTTCTG----TGTTTCGTACGTGTGCGG-TGCGCGTTTGTGTTGGAGGTGTTT-CGGT 222
consensus_7627#2      TGCTTCTGGTGGTCTTTCGTACGTGTGCGGATGCGCGTT-GTGTNGGNGGTGTTTTCGGT 183
consensus_7627#1      TGGTTCTG----TGTTTCGTACGTGTGCGG-TGCGCGTTTGTGTTGGAGGTGTTNTCGGT 182
                      ** *****    * **************** ******** **** ** ******  ****

consensus_7627#0      TTGT----ATTTTCT-T-CG-TGTT-TCCAG---TTTG-TTTTT-CCTAG-GTTTCGCTA 268
consensus_7627#2      GTCTGGTAATTTACTAT-CGATGTTGTCCAAGCTTCTG-TATTTACCTAT-GTTNCGGTA 240
consensus_7627#1      ATATGT--ATTTTCTATACGTGGTATTCCAGGTATATGGTTTNTTCCTANCGTTTCGCTA 240
                       * *    **** ** * **  **  ****    * ** * * * ****  *** ** **

consensus_7627#0      AA-AGATGTCATCCGG--AAGACCTATCAAATGTGTGGTGGTCGGCG---ACGGCACGG- 321
consensus_7627#2      AA-AGATGTCATCCGGGAAANACCTATCAAATGTGTGGNTGGTCGCGTGGACGGCACGGC 299
consensus_7627#1      AACAGATGTCATCCGG--AAGACCTATCAAATGTGTGGCTGGTCGCGCGCACGGCACGCG 298
                      ** *************  ** *****************  *   ***   ********  

consensus_7627#0      TGGG-GAAGACGTG-CATGTTGA-TCAGC-TACACGACCGACA-GCTTTCCCGGCGAA-- 374
consensus_7627#2      TGGG-GAAGACGTNTNATGTTGA-TCAGTGTACCCGACCGA-A-NGTTTCCCGGCGAA-- 353
consensus_7627#1      TGGGCGAAGACGTGCACTGTNGNATCACGCTACACGACCGACACGCTTTCCCGGCCGAAC 358
                      **** ********    *** *  ***   *** ******* *   *********  *  

consensus_7627#0      TACGTA--CCCACGGTCTTC--GACAACTACTCCG-CCCCG-ATGGTGG-TGGACGGTG- 426
consensus_7627#2      TACGTA--CCCACGGTCTTC--GACAACTAGTCCG-CCCCGTATGGTTGCTGGACGNTGG 408
consensus_7627#1      TACGCTACCCCACGGNTCTCTCGACAACTACTCCGGCCCCNNCTGGTGCGTGCGCCGCGC 418
                      ****    *******   **  ******** **** ****   ****   **  *   * 

consensus_7627#0      TGCAAGTGT-CGCTCGG-GCTGTGGGATACGGCCGGGCAGGAAGACTACGATCGGCTAAG 484
consensus_7627#2      TG---------------------------------------------------------- 410
consensus_7627#1      TGCTGCCACACGCTGGTCGCTCGGGNCTGCTGCGGCACTCACCGCGCCCGGGCCNCGACA 478
                      **                                                          

consensus_7627#0      GCCCCTGTCCTACCCACAGACGGACGTGTTCCTCATATGCTACAGTGTGGCCAGCC-CGT 543
consensus_7627#2      ------------------------------------------------------------
consensus_7627#1      CGACCTACGGAATCCGNGGGTAAA-GAGGCCCCCCTGCGTTCCCTAACGCCCAACCACGA 537
                                                                                  

consensus_7627#0      CGTCGTTCGAAAACGT-TACCTCCAAATGGTATCCCGAGATCAAGCACCACTGCCCGGAT 602
consensus_7627#2      ------------------------------------------------------------
consensus_7627#1      CACGGAACAGGTTGGTATACCCTCCATAACTGCTTACAACGTGGTGAGCGCAGCCCCGGT 597
                                                                                  

consensus_7627#0      GCGCCCATCATTTTAGTCGGAACCAAAATCGATCTGCGCGAGGATCGGGAAACGATAAGC 662
consensus_7627#2      ------------------------------------------------------------
consensus_7627#1      CCGGC--TCGTCTCCG--AAAANC------------------------------------ 617
                                                                                  

consensus_7627#0      TTGCTGGCGGACCAGGGCCTTTCCGCGCTGAAGCGCGAACAGGGCCAAAAGCTAGCGAAC 722
consensus_7627#2      ------------------------------------------------------------
consensus_7627#1      ------------------------------------------------------------
                                                                                  

consensus_7627#0      AAGATACGGGCGGTCAAGTATATGGAATGTTCGGCACTAACCCAGCGGGGCCTAAAGCAG 782
consensus_7627#2      ------------------------------------------------------------
consensus_7627#1      ------------------------------------------------------------
                                                                                  

consensus_7627#0      GTGTTTGACGAAGCGGTGCGGGCCGTCCTCAGACCGGAGCCTTTGAAACGACGCCAACGA 842
consensus_7627#2      ------------------------------------------------------------
consensus_7627#1      ------------------------------------------------------------
                                                                                  

consensus_7627#0      AAATGTGTTGTGATGTAGTGTGTGCTTGTGTGCATGTGTCCGCGTGG 889
consensus_7627#2      -----------------------------------------------
consensus_7627#1      -----------------------------------------------
                                                                     




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)