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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7636#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1265 fasta sequence
[CAGAATCNCCCGAGGNTTGACGTATCAGGAGATGTCGAGGGTATTAGAGGATTTCAGAGATACGGTTAGTGTGTGCTCTGATTGTCCTATCTCTGACAGCCACACAGCATATACATATATAGATATATACATAAAACAGGCACNTAAACTACGCGTAAACGCTCCCTCTTCTTTTCGGCGTTAAGCGTAAAAAGTAAAGCGCATATATGGGTAGGAGCAGTTGGTATATAATAGCCGACAAATCTTATAAATATAATACTGTAAAGTAATATTTACGTTTAATGCGCGCCCCCCTCAAGACTTTCCGATGCACAGAAAGCGTGGTAAGGTTAGGGACAAAAAAGAAGGAGGGTTAGTAGACCGCAGCTTTGTTTTTCC-TTTGTGTGTG--TGTGTGGTGGCTCACCTTTGGGTGTGTGTGTGTGTGTGCTGATATGAGCAAGCTTTTTTAATTTATTGTATACATTCAGGCCTTCTACCTTCCTACTACCATTTTGTACTACGCTGTGCTTGCAGACAGACACTTTTGCGTAATAGTAGGCTCTGAGAACGGTTACTACCCAGCTGCAGTTATGTGCAAATCGCAATCCTCTAGACTAAAGAGCGCTAAGAACAATAGGATTTTTTTAACAAGCTGTCATTTTGTTAAAAACTGCGTTAATTTATGTGTTTTTTTTATACCCAAACCTTCAATTCTTGTATAAGTCAAAGTTAACCCATACCCTCCCCTCCCCGCTTGACTACCGCTAATGATGCTTGTAATAATCTATTAAGGTCTA--CCTCTTAACCCCCGTGTAAAGATCGTGCAAGTTTTGTATCATTCGTTTGTGTGTACCGCTTTCGTACAACAACAAAAAAAAACCGGTACAGATATATTTTTCCCACATTGAAGACGCAAAAACAGCAAAAAGGATCGATCGGTGGTAATCATAAAACTGGTGTCCCTCACTACTACCCTCCACACTTAAGACCACCACAGGGACACAGGGATAGAGTGTGTGTGTGCGTGTGTGGCCATTCGGTCGTTTTAGAGTATGTACGCGTGCACGTATATTATAGATTCGAAACTCTCACACAACCCTCGGGACGGGACGGAACCAGCCCGACCTGGAATCGGAGGGCCCCTTCTTCCCCCCTTTCCGTTTTCCCCTTCACGTTATTCCGTGTACGGTTCTCAAGCAAAACAGTAAACAAGCAAAACAAAAACAAACAAAAAACAGAAGAAAAAGGAAACCAAACCTAAATTAACAAATAAAATATTCACCATT]
[+] EMBL AL930327 [CAGAATCNCCCGAGGNTTGACGTATCAGGAGATGTCGAGGGTATTAGAGGATTTCAGAGATACGGTTAGTGTGTGCTCTGATTGTCCTATCTCTGACAGCCACACAGCATATACATATATAGATATATACATAAAACAGGCACNTAAACTACGCGTAAACGCTCCCTCTTCTTTTCGGCGTTAAGCGTAAAAAGTAAAGCGCATATATGGGTAGGAGCAGTTGGTATATAATAGCCGACAAATCTTATAAATATAATACTGTAAAGTAATATTTACGTTTAATGCGCGCCCCCCTCAAGACTTTCCGATGCACAGAAAGCGTGGTAAGGTTAGGGACAAAAAAGAAGGAGGGTTAGTAGACCGCAGCTTTGTTTTTCC TTTGTGTGTG TGTGTGGTGGCTCACCTTTGGGTGTGTGTGTGTGTGTGCTGATATGAGCAAGCTTTTTTAATTTATTGTATACATTCAGGCCTTCTACCTTCCTACTACCA TTTGTACTACGCTGTGCTTGCAGACAGACACTTTTGCGTAATAGTAGGCTCTGAGAACGGTTACTACCCAGCTGCAGTTATGTGCAAATCGCAATCCTCTAGACTAAAGAGCGCTAAGAACAATAGGATTTTTTTAACAAGCTGTCATTTTGTTAAAAACTGCGTT ]
[+] EMBL BX611913 [ ATATAATAGCCGACAAATCTTATAAATATAATACTGTAAAGTAATATTTACGTTTAATGCGCGCCCCCCTCAAGACTTTCCGATGCACAGAAAGCGTGGTAAGGTTAGGGACAAAAAAGAAGGAGGGTTAGTAGACCGCAGCTTTGTTTTTCCTTTTGTGTGTGTTTGTGTGGTGGCTCACCTTTGGGTGTGTGTGTGTGTGTGCTGATATGAGCAAGCTTTTTTAATTTATTGTATACATTCAGGCCTTCTACCTTCCTACTACCATTTTGTACTACGCTGTGCTTGCAGACAGACACTTTTGCGTAATAGTAGGCTCTGAGAACGGTTACTACCCAGCTGCAGTTATGTGCAAATCGCAATCCTCTAGACTAAAGAGCGCTAAGAACAATAGGA TTTTTTAACAAGCTGTCATTTT TTAAAAACTGCGTTAATTTATGTGTTTTTTTTATACCCAAACCTTCAATTCTTGTATAAGTCAAAGTTAACCCATACCCTCCCCTCCCCGCTTGACTACCGCTAATGATGCTTGTAATAATCTATTAAGGTCTA CCTCTTAACCCCCGTGTAAAGATCGTGCAAGTTTTGTATCATTCGTTTGTGTGTACCGCTTTCGTACAACAACAAAAAAAAACCGGTACAGATATATTTTTCCCACATTGAAGACGCAAAAACAGCAAAAAGGATCGATCGGTGGTAATCAT ]
[+] EMBL BX604644 [ TGAGCAAGCTTAGTTAATTTATTGAATACATTCAGGCCTTCTACCTTCCTACTACCACCTTGTACTACGCTGCGCTTGCAGACAGACACTTTTGCGTAATAGTAGGCTCTGAGAACGGTAACTACCCAGCCGCAGTTATGCGCAAATCGCAATCCTCTAGACTAAAGAGCGCT ]
[+] EMBL AGA282961 [ CCCATACCCTCCCCTCCCCGCTTGACTACCGCTAATGATGCTTGTAATAATCTATTAAGGTCTAATGCTCTTAACCCCCGTGTAAAGATCGTGCAAGTTTTGTATCATTCGTTTGTGTGTACCGCTTTCGTACAACAACAAAAAAAAACCGGTACAGATATATTTTTCCCACATTGA ]
[+] EMBL BX617772 [ AAGACGCAAAAACAGCAAAAAGGATCGATCGGTGGTAATCATAAAACTGGTGTCCCTCACTACTACCCTCCACACTTAAGACCACCACAGGGACACAGGGATAGAGTGTGTGTGTGCGTGTGTGGCCATTCGGTCGTTTTAGAGTATGTACGCGTGCACGTATATTATAGATTCGAAACTCTCACACAACCCTCGGGACGGGACGGAACCAGCCCGACCTGGAATCGGAGGGCCCCTTCTTCCCCCCTTTCCGTTTTCCCCTTCACGTTATTCCGTGTACGGTTCTCAAGCAAAACAGTAAACAAGCAAAACAAAAACAAACAAAAAACAGAAGAAAAAGGAAACCAAACCTAAATTAACAAATAAAATATTCACCATT]
consensusID : consensus_7636#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence
[CCGCCCACGCGTCCGCTTCTTTTCGGCATTAAACGTAAATATTACTTTACAGTATTATATTTACGTTTAATGCGCGCCCCCCTCAAGACTTTCCGATGCACAGAAAGCGTGGTAAGGTTAGGGACAAAAAAGAAGGAGGGTTAGTAGACCGCAGCTTTGTTTTTCCTTTTGTGTGTGTTTGTGTGGTGGCTCACCTTTGTGTGTGTGTATGTGTGCTGATATGAGCAAGCTTATTTAATTTATTGTATACATTCAGGCCTTCTACCCTTCCTACTACCATTTTGTACTACGCTGTGCTTGCAGACAGACACTTTTGCGTAATAGTAGGCCCTGAGAACGGTTACTACCCAGCTGCAGTTATGTGCAAATCGCAATCCTCTAGACTAAAGAGCGCTAAGAACAATAGGATTTTTTAACAAACTGTCATTTTTTAAAAACTGCGTTAATTTATGTGTTTTTTTTATAGCCAAACCTTCAATTCTTGTATAAGTCAAAGTTAACCCATACCCTCCCTTCCCCTCTTGACTACCGCTAATGATGCTTGTAATAATCTATTAAGGTCTAATGCTCTTAACCCCCGTGTAAAGATCGTGCAAGTTTTGTATCATTCGTTTGTGTGTACCGCTTTCGTACAACA]
[+] EMBL BM639232 [CCGCCCACGCGTCCGCTTCTTTTCGGCATTAAACGTAAATATTACTTTACAGTATTATATTTACGTTTAATGCGCGCCCCCCTCAAGACTTTCCGATGCACAGAAAGCGTGGTAAGGTTAGGGACAAAAAAGAAGGAGGGTTAGTAGACCGCAGCTTTGTTTTTCCTTTTGTGTGTGTTTGTGTGGTGGCTCACCTTTGTGTGTGTGTATGTGTGCTGATATGAGCAAGCTTATTTAATTTATTGTATACATTCAGGCCTTCTACCCTTCCTACTACCATTTTGTACTACGCTGTGCTTGCAGACAGACACTTTTGCGTAATAGTAGGCCCTGAGAACGGTTACTACCCAGCTGCAGTTATGTGCAAATCGCAATCCTCTAGACTAAAGAGCGCTAAGAACAATAGGATTTTTTAACAAACTGTCATTTTTTAAAAACTGCGTTAATTTATGTGTTTTTTTTATAGCCAAACCTTCAATTCTTGTATAAGTCAAAGTTAACCCATACCCTCCCTTCCCCTCTTGACTACCGCTAATGATGCTTGTAATAATCTATTAAGGTCTAATGCTCTTAACCCCCGTGTAAAGATCGTGCAAGTTTTGTATCATTCGTTTGTGTGTACCGCTTTCGTACAACA]
consensusID : consensus_7636#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 397 fasta sequence
[TTCCCCCATTGAAGACGCAAAAACAGCAAAAAGGATCGATCGGTGGTAATCATAAAACTGGTGTCCCTCACTACTACCCTCCACACTTAAGACCACCACAGGGACACAGGGATAGAGTGTGTGTGTGCGTGTGTGGCCATTCGGTCGTTTTAGAGTATGTACGCGTGCACGTATATTATAGATTCGAAACTCTCACACAACCCTCGGGACGGGACGGAACCAGCCCGACCTGGAATCGGAGGGCCCCTTTTCCCCCCTTTCCGTTTTCCCCTTCACGTTATTCCGTGTACGGTTCTCAAGCAAAACAGTAAACAAGCAAAACAAAAACAAACAAAAAACAGAAGAAAAAGGAAACCAAACCTAAATTAACAAATAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL AGA281353 [TTCCCCCATTGAAGACGCAAAAACAGCAAAAAGGATCGATCGGTGGTAATCATAAAACTGGTGTCCCTCACTACTACCCTCCACACTTAAGACCACCACAGGGACACAGGGATAGAGTGTGTGTGTGCGTGTGTGGCCATTCGGTCGTTTTAGAGTATGTACGCGTGCACGTATATTATAGATTCGAAACTCTCACACAACCCTCGGGACGGGACGGAACCAGCCCGACCTGGAATCGGAGGGCCCCTTTTCCCCCCTTTCCGTTTTCCCCTTCACGTTATTCCGTGTACGGTTCTCAAGCAAAACAGTAAACAAGCAAAACAAAAACAAACAAAAAACAGAAGAAAAAGGAAACCAAACCTAAATTAACAAATAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7636#0 CAGAATCNCCCGAGGNTTGACGTATCAGGAGATGTCGAGGGTATTAGAGGATTTCAGAGA 60
consensus_7636#2 ------------------------------------------------------------
consensus_7636#1 ------------------------------------------------------------
consensus_7636#0 TACGGTTAGTGTGTGCTCTGATTGTCCTATCTCTGACAGCCACACAGCATATACATATAT 120
consensus_7636#2 ------------------------------------------------------------
consensus_7636#1 ------------------------------------------------------------
consensus_7636#0 AGATATATACATAAAACAGGCACNTAAACTACGCGTAAACGCTCCCTCTTCTTTTCGGCG 180
consensus_7636#2 ------------------------------------------------------------
consensus_7636#1 ------------------------------------------------------------
consensus_7636#0 TTAAGCGTAAAAAGTAAAGCGCATATATGGGTAGGAGCAGTTGGTATATAATAGCCGACA 240
consensus_7636#2 ------------------------------------------------------------
consensus_7636#1 ------------------------------------------------------------
consensus_7636#0 AATCTTATAAATATAATACTGTAAAGTAATATTTACGTTTAATGCGCGCCCCCCTCAAGA 300
consensus_7636#2 ------------------------------------------------------------
consensus_7636#1 ------------------------------------------------------------
consensus_7636#0 CTTTCCGATGCACAGAAAGCGTGGTAAGGTTAGGGACAAAAAAGAAGGAGGGTTAGTAGA 360
consensus_7636#2 ------------------------------------------------------------
consensus_7636#1 ------------------------------------------------------------
consensus_7636#0 CCGCAGCTTTGTTTTTCCTTTGTGTGTGTGTGTGGTGGCTCACCTTTGGGTGTGTGTGTG 420
consensus_7636#2 ------------------------------------------------------------
consensus_7636#1 ------------------------------------------------------------
consensus_7636#0 TGTGTGCTGATATGAGCAAGCTTTTTTAATTTATTGTATACATTCAGGCCTTCTACCTTC 480
consensus_7636#2 ------------------------------------------------------------
consensus_7636#1 ------------------------------------------------------------
consensus_7636#0 CTACTACCATTTTGTACTACGCTGTGCTTGCAGACAGACACTTTTGCGTAATAGTAGGCT 540
consensus_7636#2 ------------------------------------------------------------
consensus_7636#1 ------------------------------------------------------------
consensus_7636#0 CTGAGAACGGTTACTACCCAGCTGCAGTTATGTGCAAATCGCAATCCTCTAGACTAAAGA 600
consensus_7636#2 ------------------------------------------------------------
consensus_7636#1 ------------------------------------------------------------
consensus_7636#0 GCGCTAAGAACAATAGGATTTTTTTAACAAGCTGTCATTTTGTTAAAAACTGCGTTAATT 660
consensus_7636#2 ------------------------------------------------------------
consensus_7636#1 ------------------------------------------------------------
consensus_7636#0 TATGTGTTTTTTTTATACCCAAACCTTCAATTCTTGTATAAGTCAAAGTTAACCCATACC 720
consensus_7636#2 ------------------------------------------------------------
consensus_7636#1 ------------------------------------------------------------
consensus_7636#0 CTCCCCTCCCCGCTTGACTACCGCTAATGATGCTTGTAATAATCTATTAAGGTCTACCTC 780
consensus_7636#2 ------------------------------------------------------------
consensus_7636#1 ------------------------------------------------------------
consensus_7636#0 TTAACCCCCGTGTAAAGATCGTGCAAGTTTTGTATCATTCGTTTGTGTGTACCGCTTTCG 840
consensus_7636#2 ------------------------------------------------------------
consensus_7636#1 ------------------------------------------------------------
consensus_7636#0 TACAACAACAAAAAAAAACCGGTACAGATATATTTTTCCCACATTGAAGACGCAAAAACA 900
consensus_7636#2 -----------------------------------TTCCCCCATTGAAGACGCAAAAACA 25
consensus_7636#1 ------------------------CCGCCCACGCGTCCGCTTCTTTTCGGCATTAAA--C 34
* * * ** * * ***
consensus_7636#0 GCAAAAAGGATCGATCGGTGGTAATCATAAAACTGGTGT---CCCTCACTACTACCCTCC 957
consensus_7636#2 GCAAAAAGGATCGATCGGTGGTAATCATAAAACTGGTGT---CCCTCACTACTACCCTCC 82
consensus_7636#1 GTAAATATTACTTTACAGTATTATATTTACGTTTAATGCGCGCCCCCCTCAAGACTTTCC 94
* *** * * * ** ** ** * ** *** * * ** ***
consensus_7636#0 -ACACTTA-AGACCACCACAGGGACACAGG-GATAGAGTGTGTGTGTGCGTGTGTGGCCA 1014
consensus_7636#2 -ACACTTA-AGACCACCACAGGGACACAGG-GATAGAGTGTGTGTGTGCGTGTGTGGCCA 139
consensus_7636#1 GATGCACAGAAAGCGTGGTAAGGTTAGGGACAAAAAAGAAGGAGGGTTAGTAGACCGCAG 154
* * * * * * * ** * * * * ** * * ** ** **
consensus_7636#0 TTCGGTCGTT---TTAGAGTATGTACGCGTGCACGTATATTATAGATTCGAAACTCTCAC 1071
consensus_7636#2 TTCGGTCGTT---TTAGAGTATGTACGCGTGCACGTATATTATAGATTCGAAACTCTCAC 196
consensus_7636#1 CTTTGTTTTTCCTTTTGTGTGTGTTTGTGTGGTGGCTCACCTTTGTGTGTGTGTATGTGT 214
* ** ** ** * ** *** * *** * * * * *
consensus_7636#0 ACAACCCTCGGGACGGGACGGAACCAGCCCGACCTGGAATCGGAGGGCCCCTTCTTCCCC 1131
consensus_7636#2 ACAACCCTCGGGACGGGACGGAACCAGCCCGACCTGGAATCGGAGGGCCCCTT-TTCCCC 255
consensus_7636#1 GCTGATAT---GAGCAAGCTTATTTAATTTATTGTATACATTCAGGCCTTCTACCCTTCC 271
* * ** * * * * * *** * ** **
consensus_7636#0 CCTTTCCGTTTTCCCCTTCACGTTATTCCGTGTACGGTTCTCAAGCAAAACAGTAAACAA 1191
consensus_7636#2 CCTTTCCGTTTTCCCCTTCACGTTATTCCGTGTACGGTTCTCAAGCAAAACAGTAAACAA 315
consensus_7636#1 TACTACCATTTTGTACTACGCTGTGCTTGCAGACAGACACTTTTGCGTAATAGTAGGCCC 331
* ** **** ** * * * * * * ** ** ** **** *
consensus_7636#0 GCAAAACAAAAACAAACAAAAAACAGAAGAAAAAGGAAACCAAACCT--AAATTAACAAA 1249
consensus_7636#2 GCAAAACAAAAACAAACAAAAAACAGAAGAAAAAGGAAACCAAACCT--AAATTAACAAA 373
consensus_7636#1 TGAGAACGGTTACTACCCAGCTGCAGTTATGTGCAAATCGCAATCCTCTAGACTAAAGAG 391
* *** ** * * * *** * *** *** * * *** *
consensus_7636#0 TAAAATATTCACCATT-------------------------------------------- 1265
consensus_7636#2 TAAAAAAAAAAAAAAAAA-----AAAAAA------------------------------- 397
consensus_7636#1 CGCTAAGAACAATAGGATTTTTTAACAAACTGTCATTTTTTAAAAACTGCGTTAATTTAT 451
* * *
consensus_7636#0 ------------------------------------------------------------
consensus_7636#2 ------------------------------------------------------------
consensus_7636#1 GTGTTTTTTTTATAGCCAAACCTTCAATTCTTGTATAAGTCAAAGTTAACCCATACCCTC 511
consensus_7636#0 ------------------------------------------------------------
consensus_7636#2 ------------------------------------------------------------
consensus_7636#1 CCTTCCCCTCTTGACTACCGCTAATGATGCTTGTAATAATCTATTAAGGTCTAATGCTCT 571
consensus_7636#0 ------------------------------------------------------------
consensus_7636#2 ------------------------------------------------------------
consensus_7636#1 TAACCCCCGTGTAAAGATCGTGCAAGTTTTGTATCATTCGTTTGTGTGTACCGCTTTCGT 631
consensus_7636#0 ------
consensus_7636#2 ------
consensus_7636#1 ACAACA 637
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||