These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7636#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1265 fasta sequence [CAGAATCNCCCGAGGNTTGACGTATCAGGAGATGTCGAGGGTATTAGAGGATTTCAGAGATACGGTTAGTGTGTGCTCTGATTGTCCTATCTCTGACAGCCACACAGCATATACATATATAGATATATACATAAAACAGGCACNTAAACTACGCGTAAACGCTCCCTCTTCTTTTCGGCGTTAAGCGTAAAAAGTAAAGCGCATATATGGGTAGGAGCAGTTGGTATATAATAGCCGACAAATCTTATAAATATAATACTGTAAAGTAATATTTACGTTTAATGCGCGCCCCCCTCAAGACTTTCCGATGCACAGAAAGCGTGGTAAGGTTAGGGACAAAAAAGAAGGAGGGTTAGTAGACCGCAGCTTTGTTTTTCC-TTTGTGTGTG--TGTGTGGTGGCTCACCTTTGGGTGTGTGTGTGTGTGTGCTGATATGAGCAAGCTTTTTTAATTTATTGTATACATTCAGGCCTTCTACCTTCCTACTACCATTTTGTACTACGCTGTGCTTGCAGACAGACACTTTTGCGTAATAGTAGGCTCTGAGAACGGTTACTACCCAGCTGCAGTTATGTGCAAATCGCAATCCTCTAGACTAAAGAGCGCTAAGAACAATAGGATTTTTTTAACAAGCTGTCATTTTGTTAAAAACTGCGTTAATTTATGTGTTTTTTTTATACCCAAACCTTCAATTCTTGTATAAGTCAAAGTTAACCCATACCCTCCCCTCCCCGCTTGACTACCGCTAATGATGCTTGTAATAATCTATTAAGGTCTA--CCTCTTAACCCCCGTGTAAAGATCGTGCAAGTTTTGTATCATTCGTTTGTGTGTACCGCTTTCGTACAACAACAAAAAAAAACCGGTACAGATATATTTTTCCCACATTGAAGACGCAAAAACAGCAAAAAGGATCGATCGGTGGTAATCATAAAACTGGTGTCCCTCACTACTACCCTCCACACTTAAGACCACCACAGGGACACAGGGATAGAGTGTGTGTGTGCGTGTGTGGCCATTCGGTCGTTTTAGAGTATGTACGCGTGCACGTATATTATAGATTCGAAACTCTCACACAACCCTCGGGACGGGACGGAACCAGCCCGACCTGGAATCGGAGGGCCCCTTCTTCCCCCCTTTCCGTTTTCCCCTTCACGTTATTCCGTGTACGGTTCTCAAGCAAAACAGTAAACAAGCAAAACAAAAACAAACAAAAAACAGAAGAAAAAGGAAACCAAACCTAAATTAACAAATAAAATATTCACCATT] [+] EMBL AL930327 [CAGAATCNCCCGAGGNTTGACGTATCAGGAGATGTCGAGGGTATTAGAGGATTTCAGAGATACGGTTAGTGTGTGCTCTGATTGTCCTATCTCTGACAGCCACACAGCATATACATATATAGATATATACATAAAACAGGCACNTAAACTACGCGTAAACGCTCCCTCTTCTTTTCGGCGTTAAGCGTAAAAAGTAAAGCGCATATATGGGTAGGAGCAGTTGGTATATAATAGCCGACAAATCTTATAAATATAATACTGTAAAGTAATATTTACGTTTAATGCGCGCCCCCCTCAAGACTTTCCGATGCACAGAAAGCGTGGTAAGGTTAGGGACAAAAAAGAAGGAGGGTTAGTAGACCGCAGCTTTGTTTTTCC TTTGTGTGTG TGTGTGGTGGCTCACCTTTGGGTGTGTGTGTGTGTGTGCTGATATGAGCAAGCTTTTTTAATTTATTGTATACATTCAGGCCTTCTACCTTCCTACTACCA TTTGTACTACGCTGTGCTTGCAGACAGACACTTTTGCGTAATAGTAGGCTCTGAGAACGGTTACTACCCAGCTGCAGTTATGTGCAAATCGCAATCCTCTAGACTAAAGAGCGCTAAGAACAATAGGATTTTTTTAACAAGCTGTCATTTTGTTAAAAACTGCGTT ] [+] EMBL BX611913 [ ATATAATAGCCGACAAATCTTATAAATATAATACTGTAAAGTAATATTTACGTTTAATGCGCGCCCCCCTCAAGACTTTCCGATGCACAGAAAGCGTGGTAAGGTTAGGGACAAAAAAGAAGGAGGGTTAGTAGACCGCAGCTTTGTTTTTCCTTTTGTGTGTGTTTGTGTGGTGGCTCACCTTTGGGTGTGTGTGTGTGTGTGCTGATATGAGCAAGCTTTTTTAATTTATTGTATACATTCAGGCCTTCTACCTTCCTACTACCATTTTGTACTACGCTGTGCTTGCAGACAGACACTTTTGCGTAATAGTAGGCTCTGAGAACGGTTACTACCCAGCTGCAGTTATGTGCAAATCGCAATCCTCTAGACTAAAGAGCGCTAAGAACAATAGGA TTTTTTAACAAGCTGTCATTTT TTAAAAACTGCGTTAATTTATGTGTTTTTTTTATACCCAAACCTTCAATTCTTGTATAAGTCAAAGTTAACCCATACCCTCCCCTCCCCGCTTGACTACCGCTAATGATGCTTGTAATAATCTATTAAGGTCTA CCTCTTAACCCCCGTGTAAAGATCGTGCAAGTTTTGTATCATTCGTTTGTGTGTACCGCTTTCGTACAACAACAAAAAAAAACCGGTACAGATATATTTTTCCCACATTGAAGACGCAAAAACAGCAAAAAGGATCGATCGGTGGTAATCAT ] [+] EMBL BX604644 [ TGAGCAAGCTTAGTTAATTTATTGAATACATTCAGGCCTTCTACCTTCCTACTACCACCTTGTACTACGCTGCGCTTGCAGACAGACACTTTTGCGTAATAGTAGGCTCTGAGAACGGTAACTACCCAGCCGCAGTTATGCGCAAATCGCAATCCTCTAGACTAAAGAGCGCT ] [+] EMBL AGA282961 [ CCCATACCCTCCCCTCCCCGCTTGACTACCGCTAATGATGCTTGTAATAATCTATTAAGGTCTAATGCTCTTAACCCCCGTGTAAAGATCGTGCAAGTTTTGTATCATTCGTTTGTGTGTACCGCTTTCGTACAACAACAAAAAAAAACCGGTACAGATATATTTTTCCCACATTGA ] [+] EMBL BX617772 [ AAGACGCAAAAACAGCAAAAAGGATCGATCGGTGGTAATCATAAAACTGGTGTCCCTCACTACTACCCTCCACACTTAAGACCACCACAGGGACACAGGGATAGAGTGTGTGTGTGCGTGTGTGGCCATTCGGTCGTTTTAGAGTATGTACGCGTGCACGTATATTATAGATTCGAAACTCTCACACAACCCTCGGGACGGGACGGAACCAGCCCGACCTGGAATCGGAGGGCCCCTTCTTCCCCCCTTTCCGTTTTCCCCTTCACGTTATTCCGTGTACGGTTCTCAAGCAAAACAGTAAACAAGCAAAACAAAAACAAACAAAAAACAGAAGAAAAAGGAAACCAAACCTAAATTAACAAATAAAATATTCACCATT] consensusID : consensus_7636#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence [CCGCCCACGCGTCCGCTTCTTTTCGGCATTAAACGTAAATATTACTTTACAGTATTATATTTACGTTTAATGCGCGCCCCCCTCAAGACTTTCCGATGCACAGAAAGCGTGGTAAGGTTAGGGACAAAAAAGAAGGAGGGTTAGTAGACCGCAGCTTTGTTTTTCCTTTTGTGTGTGTTTGTGTGGTGGCTCACCTTTGTGTGTGTGTATGTGTGCTGATATGAGCAAGCTTATTTAATTTATTGTATACATTCAGGCCTTCTACCCTTCCTACTACCATTTTGTACTACGCTGTGCTTGCAGACAGACACTTTTGCGTAATAGTAGGCCCTGAGAACGGTTACTACCCAGCTGCAGTTATGTGCAAATCGCAATCCTCTAGACTAAAGAGCGCTAAGAACAATAGGATTTTTTAACAAACTGTCATTTTTTAAAAACTGCGTTAATTTATGTGTTTTTTTTATAGCCAAACCTTCAATTCTTGTATAAGTCAAAGTTAACCCATACCCTCCCTTCCCCTCTTGACTACCGCTAATGATGCTTGTAATAATCTATTAAGGTCTAATGCTCTTAACCCCCGTGTAAAGATCGTGCAAGTTTTGTATCATTCGTTTGTGTGTACCGCTTTCGTACAACA] [+] EMBL BM639232 [CCGCCCACGCGTCCGCTTCTTTTCGGCATTAAACGTAAATATTACTTTACAGTATTATATTTACGTTTAATGCGCGCCCCCCTCAAGACTTTCCGATGCACAGAAAGCGTGGTAAGGTTAGGGACAAAAAAGAAGGAGGGTTAGTAGACCGCAGCTTTGTTTTTCCTTTTGTGTGTGTTTGTGTGGTGGCTCACCTTTGTGTGTGTGTATGTGTGCTGATATGAGCAAGCTTATTTAATTTATTGTATACATTCAGGCCTTCTACCCTTCCTACTACCATTTTGTACTACGCTGTGCTTGCAGACAGACACTTTTGCGTAATAGTAGGCCCTGAGAACGGTTACTACCCAGCTGCAGTTATGTGCAAATCGCAATCCTCTAGACTAAAGAGCGCTAAGAACAATAGGATTTTTTAACAAACTGTCATTTTTTAAAAACTGCGTTAATTTATGTGTTTTTTTTATAGCCAAACCTTCAATTCTTGTATAAGTCAAAGTTAACCCATACCCTCCCTTCCCCTCTTGACTACCGCTAATGATGCTTGTAATAATCTATTAAGGTCTAATGCTCTTAACCCCCGTGTAAAGATCGTGCAAGTTTTGTATCATTCGTTTGTGTGTACCGCTTTCGTACAACA] consensusID : consensus_7636#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 397 fasta sequence [TTCCCCCATTGAAGACGCAAAAACAGCAAAAAGGATCGATCGGTGGTAATCATAAAACTGGTGTCCCTCACTACTACCCTCCACACTTAAGACCACCACAGGGACACAGGGATAGAGTGTGTGTGTGCGTGTGTGGCCATTCGGTCGTTTTAGAGTATGTACGCGTGCACGTATATTATAGATTCGAAACTCTCACACAACCCTCGGGACGGGACGGAACCAGCCCGACCTGGAATCGGAGGGCCCCTTTTCCCCCCTTTCCGTTTTCCCCTTCACGTTATTCCGTGTACGGTTCTCAAGCAAAACAGTAAACAAGCAAAACAAAAACAAACAAAAAACAGAAGAAAAAGGAAACCAAACCTAAATTAACAAATAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL AGA281353 [TTCCCCCATTGAAGACGCAAAAACAGCAAAAAGGATCGATCGGTGGTAATCATAAAACTGGTGTCCCTCACTACTACCCTCCACACTTAAGACCACCACAGGGACACAGGGATAGAGTGTGTGTGTGCGTGTGTGGCCATTCGGTCGTTTTAGAGTATGTACGCGTGCACGTATATTATAGATTCGAAACTCTCACACAACCCTCGGGACGGGACGGAACCAGCCCGACCTGGAATCGGAGGGCCCCTTTTCCCCCCTTTCCGTTTTCCCCTTCACGTTATTCCGTGTACGGTTCTCAAGCAAAACAGTAAACAAGCAAAACAAAAACAAACAAAAAACAGAAGAAAAAGGAAACCAAACCTAAATTAACAAATAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7636#0 CAGAATCNCCCGAGGNTTGACGTATCAGGAGATGTCGAGGGTATTAGAGGATTTCAGAGA 60 consensus_7636#2 ------------------------------------------------------------ consensus_7636#1 ------------------------------------------------------------ consensus_7636#0 TACGGTTAGTGTGTGCTCTGATTGTCCTATCTCTGACAGCCACACAGCATATACATATAT 120 consensus_7636#2 ------------------------------------------------------------ consensus_7636#1 ------------------------------------------------------------ consensus_7636#0 AGATATATACATAAAACAGGCACNTAAACTACGCGTAAACGCTCCCTCTTCTTTTCGGCG 180 consensus_7636#2 ------------------------------------------------------------ consensus_7636#1 ------------------------------------------------------------ consensus_7636#0 TTAAGCGTAAAAAGTAAAGCGCATATATGGGTAGGAGCAGTTGGTATATAATAGCCGACA 240 consensus_7636#2 ------------------------------------------------------------ consensus_7636#1 ------------------------------------------------------------ consensus_7636#0 AATCTTATAAATATAATACTGTAAAGTAATATTTACGTTTAATGCGCGCCCCCCTCAAGA 300 consensus_7636#2 ------------------------------------------------------------ consensus_7636#1 ------------------------------------------------------------ consensus_7636#0 CTTTCCGATGCACAGAAAGCGTGGTAAGGTTAGGGACAAAAAAGAAGGAGGGTTAGTAGA 360 consensus_7636#2 ------------------------------------------------------------ consensus_7636#1 ------------------------------------------------------------ consensus_7636#0 CCGCAGCTTTGTTTTTCCTTTGTGTGTGTGTGTGGTGGCTCACCTTTGGGTGTGTGTGTG 420 consensus_7636#2 ------------------------------------------------------------ consensus_7636#1 ------------------------------------------------------------ consensus_7636#0 TGTGTGCTGATATGAGCAAGCTTTTTTAATTTATTGTATACATTCAGGCCTTCTACCTTC 480 consensus_7636#2 ------------------------------------------------------------ consensus_7636#1 ------------------------------------------------------------ consensus_7636#0 CTACTACCATTTTGTACTACGCTGTGCTTGCAGACAGACACTTTTGCGTAATAGTAGGCT 540 consensus_7636#2 ------------------------------------------------------------ consensus_7636#1 ------------------------------------------------------------ consensus_7636#0 CTGAGAACGGTTACTACCCAGCTGCAGTTATGTGCAAATCGCAATCCTCTAGACTAAAGA 600 consensus_7636#2 ------------------------------------------------------------ consensus_7636#1 ------------------------------------------------------------ consensus_7636#0 GCGCTAAGAACAATAGGATTTTTTTAACAAGCTGTCATTTTGTTAAAAACTGCGTTAATT 660 consensus_7636#2 ------------------------------------------------------------ consensus_7636#1 ------------------------------------------------------------ consensus_7636#0 TATGTGTTTTTTTTATACCCAAACCTTCAATTCTTGTATAAGTCAAAGTTAACCCATACC 720 consensus_7636#2 ------------------------------------------------------------ consensus_7636#1 ------------------------------------------------------------ consensus_7636#0 CTCCCCTCCCCGCTTGACTACCGCTAATGATGCTTGTAATAATCTATTAAGGTCTACCTC 780 consensus_7636#2 ------------------------------------------------------------ consensus_7636#1 ------------------------------------------------------------ consensus_7636#0 TTAACCCCCGTGTAAAGATCGTGCAAGTTTTGTATCATTCGTTTGTGTGTACCGCTTTCG 840 consensus_7636#2 ------------------------------------------------------------ consensus_7636#1 ------------------------------------------------------------ consensus_7636#0 TACAACAACAAAAAAAAACCGGTACAGATATATTTTTCCCACATTGAAGACGCAAAAACA 900 consensus_7636#2 -----------------------------------TTCCCCCATTGAAGACGCAAAAACA 25 consensus_7636#1 ------------------------CCGCCCACGCGTCCGCTTCTTTTCGGCATTAAA--C 34 * * * ** * * *** consensus_7636#0 GCAAAAAGGATCGATCGGTGGTAATCATAAAACTGGTGT---CCCTCACTACTACCCTCC 957 consensus_7636#2 GCAAAAAGGATCGATCGGTGGTAATCATAAAACTGGTGT---CCCTCACTACTACCCTCC 82 consensus_7636#1 GTAAATATTACTTTACAGTATTATATTTACGTTTAATGCGCGCCCCCCTCAAGACTTTCC 94 * *** * * * ** ** ** * ** *** * * ** *** consensus_7636#0 -ACACTTA-AGACCACCACAGGGACACAGG-GATAGAGTGTGTGTGTGCGTGTGTGGCCA 1014 consensus_7636#2 -ACACTTA-AGACCACCACAGGGACACAGG-GATAGAGTGTGTGTGTGCGTGTGTGGCCA 139 consensus_7636#1 GATGCACAGAAAGCGTGGTAAGGTTAGGGACAAAAAAGAAGGAGGGTTAGTAGACCGCAG 154 * * * * * * * ** * * * * ** * * ** ** ** consensus_7636#0 TTCGGTCGTT---TTAGAGTATGTACGCGTGCACGTATATTATAGATTCGAAACTCTCAC 1071 consensus_7636#2 TTCGGTCGTT---TTAGAGTATGTACGCGTGCACGTATATTATAGATTCGAAACTCTCAC 196 consensus_7636#1 CTTTGTTTTTCCTTTTGTGTGTGTTTGTGTGGTGGCTCACCTTTGTGTGTGTGTATGTGT 214 * ** ** ** * ** *** * *** * * * * * consensus_7636#0 ACAACCCTCGGGACGGGACGGAACCAGCCCGACCTGGAATCGGAGGGCCCCTTCTTCCCC 1131 consensus_7636#2 ACAACCCTCGGGACGGGACGGAACCAGCCCGACCTGGAATCGGAGGGCCCCTT-TTCCCC 255 consensus_7636#1 GCTGATAT---GAGCAAGCTTATTTAATTTATTGTATACATTCAGGCCTTCTACCCTTCC 271 * * ** * * * * * *** * ** ** consensus_7636#0 CCTTTCCGTTTTCCCCTTCACGTTATTCCGTGTACGGTTCTCAAGCAAAACAGTAAACAA 1191 consensus_7636#2 CCTTTCCGTTTTCCCCTTCACGTTATTCCGTGTACGGTTCTCAAGCAAAACAGTAAACAA 315 consensus_7636#1 TACTACCATTTTGTACTACGCTGTGCTTGCAGACAGACACTTTTGCGTAATAGTAGGCCC 331 * ** **** ** * * * * * * ** ** ** **** * consensus_7636#0 GCAAAACAAAAACAAACAAAAAACAGAAGAAAAAGGAAACCAAACCT--AAATTAACAAA 1249 consensus_7636#2 GCAAAACAAAAACAAACAAAAAACAGAAGAAAAAGGAAACCAAACCT--AAATTAACAAA 373 consensus_7636#1 TGAGAACGGTTACTACCCAGCTGCAGTTATGTGCAAATCGCAATCCTCTAGACTAAAGAG 391 * *** ** * * * *** * *** *** * * *** * consensus_7636#0 TAAAATATTCACCATT-------------------------------------------- 1265 consensus_7636#2 TAAAAAAAAAAAAAAAAA-----AAAAAA------------------------------- 397 consensus_7636#1 CGCTAAGAACAATAGGATTTTTTAACAAACTGTCATTTTTTAAAAACTGCGTTAATTTAT 451 * * * consensus_7636#0 ------------------------------------------------------------ consensus_7636#2 ------------------------------------------------------------ consensus_7636#1 GTGTTTTTTTTATAGCCAAACCTTCAATTCTTGTATAAGTCAAAGTTAACCCATACCCTC 511 consensus_7636#0 ------------------------------------------------------------ consensus_7636#2 ------------------------------------------------------------ consensus_7636#1 CCTTCCCCTCTTGACTACCGCTAATGATGCTTGTAATAATCTATTAAGGTCTAATGCTCT 571 consensus_7636#0 ------------------------------------------------------------ consensus_7636#2 ------------------------------------------------------------ consensus_7636#1 TAACCCCCGTGTAAAGATCGTGCAAGTTTTGTATCATTCGTTTGTGTGTACCGCTTTCGT 631 consensus_7636#0 ------ consensus_7636#2 ------ consensus_7636#1 ACAACA 637 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||