These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7639#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1458 fasta sequence [TTCGTTATGTATAATTTCTACTTCCTCCA-CATCAAACCATCGATCCTTCAACAT-CCAT-CCCACCGGCCAATTCATCCGCCGGTGGATTGACCAGTGCGGCCGGAATATTTAGCGTCTTACCCGGGCACAGCGCCTCAAACTGATGCTTTAGACTCTCCAGCTCAAAGTTACAGGTGGCCAGGGCGGTCCGCAATTCGCACAGCAGCACCATATCCGATCGCAGCTCATTGAACGCCACAAAAATATCTTCTACCGGGGGTGGATTCGGGTCCACCTTGAACTCCTGCAGTGCCTGCTCCAGCGCCTTCGCTTTCTTCTGGCCAACGTTGGCGGGCAGTTTCATCTTTTGCGATCTCAACGATACACCCGTGCCTCGCAGATCCGTAAACTTAATGCCAGCGCTCTCCACTGCGCTTACCACCGAATCCACCTTGGACGTGCGTGGCTGCTGTTGGATCTTTTTCTTGTTCAGCTTTTTGTCCTGCTTTTTGTGCGATGTGTTCTGGGTACCGTGGGGCTGCGTTTGGCTATGATGCTGCTGCTGCTCCTTCTGATGGTGTTCCGTCTGTTGCTGGTCGGCCTGCGAGAAGAGCTTCTGCAGAACTTGCGTCTTGCGCTCGCGCTCCTTCTTGCGTGCTTCGATCTTCTTCAGCTCGTTCAGCAACTGTTGCTCCTCCTCCACCTGCTTCGATGTGCGGTCGAACAGCTTCTTCAGCTGCTCCTTTCGGCGCCGCT-CGTGCTCCGCATCGAACACGTACACCTTCTTCTCGACACCGCCCTGCCCGTTGGCGTTGCGTACTTTGTTCAATATGCCAACCACCTCGTAGTAGCGCTCTTTCAGATCTTCCACCGATTTGATGCCATAGTTTGCCCGCTCCCAACGGTCACACATGATGATGAACCGAACGTCGAACCGTTTGGCCAGATCGAACAGATGGTCCGTCTGCTGTTTGGTACA-TTCGTTGTCTTGAAAAACGCATTGTAATCGTTCAGCGTGTAGGTGGGAATGTCCAGCTGCTTGTTAAACCGGGCGAATGGATACT-CTTCGGCTCGTCCGTCACGCGCTTCCAGTGGTGAAAGACGGCCCCATCAGTACGGGCCGGATTTACGAACGGTGCCCACTCCCAGCGGCGCACCTTTTTCATGCCCAATCGGGCCTTCGTCTTCTTGTAGCCGGAAACGGTATCCGTTGGCA-GAAGCG-GTGGTGCAT-CTTTGT-TGTCATTGTACAGCAGAGCAAACACCTCCCGGTGCATACCTTCAGG-ACGTTTGGCCACAATTTTCCTTTCGACAGTGCGTTTCTTAGAGTTGAGCAGTGCTTCCTTCGTTAACTCCGGCGTCACCGGACGCTCCAGC-TCAAGAATATCCGGCACATCAGCCATGATGTGAGAAAATGTTTAGAAATCTAATAAAATTTACAATCAATATCGTTCACTTTACAAGTTCCTCGTGCCGNATCTG] [+] EMBL CNS08GZS [TTCGTTATGTATAATTTCTACTTCCTCCA CATCAAACCATCGATCCTTCAACAT CCAT CCCACCGGCCAATTCATCCGCCGGTGGATTGACCAGTGCGGCCGGAATATTTAGCGTCTTACCCGGGCACAGCGCCTCAAACTGATGCTTTAGACTCTCCAGCTCAAAGTTACAGGTGGCCAGGGCGGTCCGCAATTCGCACAGCAGCACCATATCCGATCGCAGCTCATTGAACGCCACAAAAATATCTTCTACCGGGGGTGGATTCGGGTCCACCTTGAACTCCTGCAGTGCCTGCTCCAGCGCCTTCGCTTTCTTCTGGCCAACGTTGGCGGGCAGTTTCATCTTTTGCGATCTCAACGATACACCCGTGCCTCGCAGATCCGTAAACTTAATGCCAGCGCTCTCCACTGCGCTTACCACCGAATCCACCTTGGACGTGCGTGGCTGCTGTTGGATCTTTTTCTTGTTCAGCTTTTTGTCCTGCTTTTTGTGCGATGTGTTCTGGGTACCGTGGGGCTGCGTTTGGCTATGATGCTGCTGCTGCTCCTTCTGATGGTGTTCCGTCTGTTGCTGGTCGGCCTGCGAGAAGAGCTTCTGCAGAACTTGCGTCTTGCGCTCGCGCTCCTTCTTGCGTGCTTCGATCTTCTTCAGCTCGTTCAGCAACTGTTGCTCCTCCTCCACCTGCTTCGATGTGCGGTCGAACAGCTTCTTCAGCTGCTCCTTTCGGCGCCGCT CGTGCTCCGCATCGAACACGTACACCTTCTTCTCGACACCGCCCTGCCCGTTGGCGTTGCGTACTTTGTTCAATATGCCAACCACCTCGTAGTAGCGCTCTTTCAGATCTTCCACCGATTTGATGCCATAGTTTGCCCGCTCCCAACGGTCACACATGATGATGAACCGAACGTCGAACCGTTTGGCCAGAACGAACAGA ] [-] EMBL BM614550 [ TCGTTATGTATAATTTCTACTTCCTCCACCATCAAACCATCGATCCTTCAACATCCCATCCCCACCGGCCGATTCATCCGCCGGTGGATTGACCAATGCGGCCGGAATATTTAGCGTCTTACCCGGGCACAGCGCCTCATACTGATGCTTTAGACTCTCCAGCTCAAAGTTACAGGTGGCCAGTGCGGTTCGCAATTCGCACAGCAGCACCATATCCGATCGCAGCTCATTGAACGCCACACAGATATCTTCTACCGGGGGTGGATTCGGGTCCACCTTGAACTCCTGCAGTGCCTGCTCGAGTGCCTTCGCTTTCTTCTGGCCAACGTTGGCGGGCAGTTTCATCTTTTGCGATCTCAACGACACACCCGTACCACGCAGATCCGTAAACTTAATGCCAGCGCTCTCCACTGCGCTTACCACCGAATCCACCTTGGACGTGCGTGGCTGCTGTTGGATCTTTTTCTTGTTCAGCTTTTTGTCCTGCTTTTTGTGCGATGTGTTCTGGGTACCGTGGGGCTGCGTTTGGCTATGATGCTGCTGCTGCTCCTTCTGATGGTGcgg ] [+] EMBL CNS08MG8 [ ctATCGCAGCTCATTTAACGCCACAAAAATATCTTCTACCGGGGGTGGATTCGGGTCCACCTTGAACTCCTGCAGTTCCTGCTCCAGCGCCTTCGCTTTCTTCTGGCCAACGTTGGCGGGCAGTTTCATCTTTTGCGATCTCAACGATACACCCGTGCCTCGCAGATCCGTAAACTTAATGCCAGCGCTCTCCACTGCGCTTACCACCGAATCCACCTTGGACGTGCGTGGCTGCTGTTGGATCTTTTTCTTGTTCAGCTTTTTGTC ] [-] EMBL CNS08MG7 [ AGCTGCTCCTTTCGGCGCCGCTCCGTG TCCGCATCGAAAACGTACACCTTCTTCTCGACACCGCCCTGCCCGTTGGCGTTGCGTACTTTGTTCAATATGCCAACCACCTCGTAGTAGCGCTCTTTCAGATCTTCCACCGATTTGATGCCATAGTTTGCCCGCTCCCAACGGTCACACATGATGATGAACCGAACGTCGAACCGTTTGGCCAGATCGAACAGATGGTCCGTCTGCTGTTTGGTACA TTCGTTGTCTTGAAAAACGCATTGTAATCGTTCAGCGTGTAGGTGGGAATGTCCAGCTGCTTGTTAAACCGGGCGAATGGATACT CTTCGGCTCGTCCGTCACGCGCTTCCAGTGGTGAAAGACGGCCCCATCAGTACGGGCCGGATTTACGAACGGTGCCCACTCCCAGCGGCGCACCTTTTTCATGCCCAATCGGGCCTTCGTCTTCTTGTAGCCGGAAACGGTATCCGTTGGCA GAAGCG GTGGTGCAT CTTTGT TGTCATTGTACAGCAGAGCAAACACCTCCCGGTGCATACCTTCAGG ACGTTTGGCCACAATTTTCCTTTCGACAGTGCGTTTCTTAGAGTTGAGCAGTGCTTCCTTCGTTAACTCCGGCGTCACCGG ] [-] EMBL BM600715 [ TGCTCCTTTCGGCGCCGCT CGTGCTCCGCATCGAACACGTACACCTTCTTCTCGACACCGCCCTGCCCGTTGGCGTTGCGTACTTTGTTCAATATGCCCACCACCTCGTAGTAGCGCTCCTTCAGATCTTCCACCGATTTGATGCCATAGTTTGCCCGCTCCCAACGGTCACACATGATGATGAACCGAACGTCGAACCGTTTGGCCAGATCGAACAGATGGTCCGTCTGCTGTTTGGTCCACTTCGTTGTCTTGAGATGCGCATTGTAATCGTTCAGCGTGTAGGTGGGAATGTCCAGCTGCTTGTTAAACCGGGCGAATGGATACTCCTTCGGCTCGTCCGTCACGCGCTTCCAGTGGTGAAAGACGGCCCCATCAGTACGGGCCGGATTAACGAACGGTGCCCACTCCCAGCGGCGCACCTTTTTCATGCCCAATCGGGCCTTCGTCTTCTTGTAGCCGGAAACGGTATCCGTTGGCA GAAGCG GTGGTGCAT CTTTGT TGTCATTGTACAGCAGAGCAAACACCTCCCGGTGCATACCTTCAGG ACGTTTGGCCACAATTTTCCTTTCGACAGTGCGTTTCTTAGAGTTGAGCAGTGCTTCCTTCGTTAACTCCGGCGTCACCGGACGCTCCAGC TCAAGAATATCCGG ] [-] EMBL BX619815 [ TGGCAGGAAGCGTGTGGTGCATGCTTTGTCTGTCATTGTACAGCAGAGCAAACACCTCCCGGTGCATACCTTCAGGNACGTTTGGCCACAATTTTCCTTTCGACAGTGCGTTTCTTAGAGTTGAGCAGTGCTTCCTTCGTTAACTCCGGCGTCACCGGACGCTCCAGCNTCAAGAATATCCCGCACATCAGCCATGATGTGAGAAAATGTTTAGAAATCTAATAAAATTTACAATCAATATCGTTCACTTTACAAGTTCCTCGTGCCGNATCTG] consensusID : consensus_7639#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence [TGATGAACCCGAACGTNGAACCCGTTTGGCCAGATCGGAGCAGATGGTCCGTGCTGCTGTTTGGTCCCACTTAGNTGTCTTGAGATGCAGCATTGTAATCGTTCAGCTGTGTAGGCTGCGGAATGTCCAGTCTGACTTTGTTAAAACCGGGTCGAATTGGATACCTACCATGTGCAGGCATCGATCCGTCATCGACGCCTCTCCAGATGGCTGCAAAAGTACGGCGCCACAGTCAGCTACGGGTCCGGATTTAACGACACGGTGCCCACTCCCAGCGGCGCACCTTTTTCANGCCCCAATCGGGCCTTCGTCTTCTTGTATGCCGGATATACGGTATCCGTTGGCAGAAANACGGTGGTCACATCNTCTATGATTGTCAGTTGTATCAGCCAGAGCTAGAACATCCTCCCGGATGCAGTACCTTCAGGACGTTTAGNACACACAATTNTCCTGNCGACAGTGCGTTTCTAAGAGGTGAGCAGTGCTTCNTTNGTGNACTCCGGCGTCACCGGACGCTCCAGCTCAAGAATATGCCGCACATCAGCCATGATGTGAGAGAATGTTTAGAAATTCAATNAATTTACAATAAATATGCGCTTCACTNTGACATGCTTAANCCCTG] [-] EMBL AL932955 [TGATGAACCCGAACGTNGAACCCGTTTGGCCAGATCGGAGCAGATGGTCCGTGCTGCTGTTTGGTCCCACTTAGNTGTCTTGAGATGCAGCATTGTAATCGTTCAGCTGTGTAGGCTGCGGAATGTCCAGTCTGACTTTGTTAAAACCGGGTCGAATTGGATACCTACCATGTGCAGGCATCGATCCGTCATCGACGCCTCTCCAGATGGCTGCAAAAGTACGGCGCCACAGTCAGCTACGGGTCCGGATTTAACGACACGGTGCCCACTCCCAGCGGCGCACCTTTTTCANGCCCCAATCGGGCCTTCGTCTTCTTGTATGCCGGATATACGGTATCCGTTGGCAGAAANACGGTGGTCACATCNTCTATGATTGTCAGTTGTATCAGCCAGAGCTAGAACATCCTCCCGGATGCAGTACCTTCAGGACGTTTAGNACACACAATTNTCCTGNCGACAGTGCGTTTCTAAGAGGTGAGCAGTGCTTCNTTNGTGNACTCCGGCGTCACCGGACGCTCCAGCTCAAGAATATGCCGCACATCAGCCATGATGTGAGAGAATGTTTAGAAATTCAATNAATTTACAATAAATATGCGCTTCACTNTGACATGCTTAANCCCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7639#0 TTCGTTATGTATAATTTCTACTTCCTCCACATCAAACCATCGATCCTTCAACATCCATCC 60 consensus_7639#1 ------------------------------------------------------------ consensus_7639#0 CACCGGCCAATTCATCCGCCGGTGGATTGACCAGTGCGGCCGGAATATTTAGCGTCTTAC 120 consensus_7639#1 ------------------------------------------------------------ consensus_7639#0 CCGGGCACAGCGCCTCAAACTGATGCTTTAGACTCTCCAGCTCAAAGTTACAGGTGGCCA 180 consensus_7639#1 ------------------------------------------------------------ consensus_7639#0 GGGCGGTCCGCAATTCGCACAGCAGCACCATATCCGATCGCAGCTCATTGAACGCCACAA 240 consensus_7639#1 ------------------------------------------------------------ consensus_7639#0 AAATATCTTCTACCGGGGGTGGATTCGGGTCCACCTTGAACTCCTGCAGTGCCTGCTCCA 300 consensus_7639#1 ------------------------------------------------------------ consensus_7639#0 GCGCCTTCGCTTTCTTCTGGCCAACGTTGGCGGGCAGTTTCATCTTTTGCGATCTCAACG 360 consensus_7639#1 ------------------------------------------------------------ consensus_7639#0 ATACACCCGTGCCTCGCAGATCCGTAAACTTAATGCCAGCGCTCTCCACTGCGCTTACCA 420 consensus_7639#1 ------------------------------------------------------------ consensus_7639#0 CCGAATCCACCTTGGACGTGCGTGGCTGCTGTTGGATCTTTTTCTTGTTCAGCTTTTTGT 480 consensus_7639#1 ------------------------------------------------------------ consensus_7639#0 CCTGCTTTTTGTGCGATGTGTTCTGGGTACCGTGGGGCTGCGTTTGGCTATGATGCTGCT 540 consensus_7639#1 ------------------------------------------------------------ consensus_7639#0 GCTGCTCCTTCTGATGGTGTTCCGTCTGTTGCTGGTCGGCCTGCGAGAAGAGCTTCTGCA 600 consensus_7639#1 ------------------------------------------------------------ consensus_7639#0 GAACTTGCGTCTTGCGCTCGCGCTCCTTCTTGCGTGCTTCGATCTTCTTCAGCTCGTTCA 660 consensus_7639#1 ------------------------------------------------------------ consensus_7639#0 GCAACTGTTGCTCCTCCTCCACCTGCTTCGATGTGCGGTCGAACAGCTTCTTCAGCTGCT 720 consensus_7639#1 ------------------------------------------------------------ consensus_7639#0 CCTTTCGGCGCCGCTCGTGCTCCGCATCGAACACGTACACCTTCTTCTCGACACCGCCCT 780 consensus_7639#1 ------------------------------------------------------------ consensus_7639#0 GCCCGTTGGCGTTGCGTACTTTGTTCAATATGCCAACCACCTCGTAGTAGCGCTCTTTCA 840 consensus_7639#1 ------------------------------------------------------------ consensus_7639#0 GATCTTCCACCGATTTGATGCCATAGTTTGCCCGCTCCCAACGGTCACACATGATGATGA 900 consensus_7639#1 ------------------------------------------------------TGATGA 6 ****** consensus_7639#0 ACC-GAACGTCGAACC-GTTTGGCCAGATCGAA-CAGATGGTCCGT-CTGCTGTTTGGTA 956 consensus_7639#1 ACCCGAACGTNGAACCCGTTTGGCCAGATCGGAGCAGATGGTCCGTGCTGCTGTTTGGTC 66 *** ****** ***** ************** * ************ ************ consensus_7639#0 CA--TTCGTTGTCTTGAAAAAC-GCATTGTAATCGTTCAGC-GTGTAGGTGG--GAATGT 1010 consensus_7639#1 CCACTTAGNTGTCTTGAGATGCAGCATTGTAATCGTTCAGCTGTGTAGGCTGCGGAATGT 126 * ** * ******** * * ****************** ******* * ****** consensus_7639#0 CCAG-CTG--CTTGTTAAA-CCGGG-CGAAT-GGATACT-------------CTTCGGCT 1051 consensus_7639#1 CCAGTCTGACTTTGTTAAAACCGGGTCGAATTGGATACCTACCATGTGCAGGCATCGATC 186 **** *** ******** ***** ***** ****** * *** consensus_7639#0 CGTCCGTCACGCGCTTCCAG-----TGGTGAAAGACGGCCCCA---TCAG-TACGGG-CC 1101 consensus_7639#1 CGTCATCGACGCCTCTCCAGATGGCTGCAAAAGTACGGCGCCACAGTCAGCTACGGGTCC 246 **** **** ***** ** ** ***** *** **** ****** ** consensus_7639#0 GGATTTA-CGA-ACGGTGCCCACTCCCAGCGGCGCACCTTTTTCATGCCC-AATCGGGCC 1158 consensus_7639#1 GGATTTAACGACACGGTGCCCACTCCCAGCGGCGCACCTTTTTCANGCCCCAATCGGGCC 306 ******* *** ********************************* **** ********* consensus_7639#0 TTCGTCTTCTTGTA-GCCGGAAA--CGGTATCCGTTGGCAGAAGC--GGTGGT-GCATCT 1212 consensus_7639#1 TTCGTCTTCTTGTATGCCGGATATACGGTATCCGTTGGCAGAAANACGGTGGTCACATCN 366 ************** ****** * ****************** ****** **** consensus_7639#0 TT----GTTGTCA-TTGTA-CAGC-AGAGC--AAACA-CCTCCCGG-TGCA-TACCTTCA 1260 consensus_7639#1 TCTATGATTGTCAGTTGTATCAGCCAGAGCTAGAACATCCTCCCGGATGCAGTACCTTCA 426 * ****** ***** **** ***** **** ******** **** ******** consensus_7639#0 GGACGTTTGGC---CACAATTTTCCTTTCGACAGTGCGTTTCTTAGAGTTGAGCAGTGCT 1317 consensus_7639#1 GGACGTTTAGNACACACAATTNTCCTGNCGACAGTGCGTTTCTAAGAGGTGAGCAGTGCT 486 ******** * ******* **** *************** **** *********** consensus_7639#0 TCCTTCGTTAACTCCGGCGTCACCGGACGCTCCAGCTCAAGAATATCCGGCACATCAGCC 1377 consensus_7639#1 TCNTTNGTGNACTCCGGCGTCACCGGACGCTCCAGCTCAAGAATATGCCGCACATCAGCC 546 ** ** ** ************************************ * *********** consensus_7639#0 ATGATGTGAGAAAATGTTTAGAAATCTAATAAAATTTACAATCAATATCGTTCACTTTAC 1437 consensus_7639#1 ATGATGTGAGAGAATGTTTAGAAATTCAATNAA-TTTACAATAAATATGCGCTTCACTNT 605 *********** ************* *** ** ******** ***** * * consensus_7639#0 AAGTTCCTCGTGCCGNATCTG 1458 consensus_7639#1 GACATGCTTAANCCCTG---- 622 * * ** ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||